HEADER DNA BINDING PROTEIN/DNA 07-OCT-18 6IIQ TITLE COMPLEX STRUCTURE OF THE HRP3 PWWP DOMAIN WITH A 16-BP TA-RICH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR-RELATED PROTEIN 3; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HRP-3,HEPATOMA-DERIVED GROWTH FACTOR 2,HDGF-2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 16-BP TA-RICH DNA; COMPND 8 CHAIN: D, E, F, G; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDGFL3, HDGF2, HDGFRP3, CGI-142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS GROWTH FACTOR, PWWP DOMAIN, HEPATOMA-DERIVED GROWTH FACTOR-RELATED KEYWDS 2 PROTEIN 3, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,W.TIAN REVDAT 2 22-NOV-23 6IIQ 1 REMARK REVDAT 1 24-APR-19 6IIQ 0 JRNL AUTH Z.WANG,W.TIAN JRNL TITL COMPLEX STRUCTURE OF THE HRP3 PWWP DOMAIN WITH A 16-BP JRNL TITL 2 TA-RICH DNA JRNL REF NUCLEIC ACIDS RES. 2019 JRNL REFN ESSN 1362-4962 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 31477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9759 - 4.0961 0.96 2934 163 0.1745 0.1985 REMARK 3 2 4.0961 - 3.2526 0.94 2794 128 0.1791 0.2297 REMARK 3 3 3.2526 - 2.8419 0.92 2695 159 0.2303 0.2974 REMARK 3 4 2.8419 - 2.5822 0.93 2674 139 0.2431 0.3075 REMARK 3 5 2.5822 - 2.3972 0.93 2707 126 0.2325 0.2541 REMARK 3 6 2.3972 - 2.2560 0.94 2766 133 0.2281 0.2937 REMARK 3 7 2.2560 - 2.1430 0.94 2756 143 0.2267 0.2949 REMARK 3 8 2.1430 - 2.0498 0.94 2699 138 0.2101 0.2851 REMARK 3 9 2.0498 - 1.9709 0.94 2682 145 0.2347 0.2906 REMARK 3 10 1.9709 - 1.9029 0.95 2787 163 0.2542 0.2867 REMARK 3 11 1.9029 - 1.8434 0.86 2407 139 0.2740 0.3551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3250 REMARK 3 ANGLE : 1.119 4503 REMARK 3 CHIRALITY : 0.051 427 REMARK 3 PLANARITY : 0.005 487 REMARK 3 DIHEDRAL : 20.226 1276 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.2097 7.9591 50.1795 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2183 REMARK 3 T33: 0.2020 T12: 0.0925 REMARK 3 T13: -0.0054 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.0564 L22: 0.1062 REMARK 3 L33: 0.4642 L12: 0.0720 REMARK 3 L13: -0.1928 L23: -0.0675 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: 0.0984 S13: 0.0072 REMARK 3 S21: 0.0505 S22: -0.0176 S23: -0.0306 REMARK 3 S31: 0.0637 S32: -0.0611 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6IIP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.1 M SODIUM REMARK 280 MALONATE, PH 8.0, AND 26% POLYETHYLENE GLYCOL 1000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.71300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.77800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.71300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.77800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 DA D 16 REMARK 465 DT D 17 REMARK 465 DA D 18 REMARK 465 DT D 19 REMARK 465 DA D 20 REMARK 465 DT D 21 REMARK 465 DA D 22 REMARK 465 DT D 23 REMARK 465 DA D 24 REMARK 465 DT D 25 REMARK 465 DA D 26 REMARK 465 DT E 10 REMARK 465 DT E 16 REMARK 465 DA E 17 REMARK 465 DT E 18 REMARK 465 DA E 19 REMARK 465 DT E 20 REMARK 465 DA E 21 REMARK 465 DT E 22 REMARK 465 DA E 23 REMARK 465 DT E 24 REMARK 465 DA E 25 REMARK 465 DT F 11 REMARK 465 DA F 12 REMARK 465 DT F 13 REMARK 465 DA F 14 REMARK 465 DT F 15 REMARK 465 DA F 16 REMARK 465 DT G 11 REMARK 465 DA G 12 REMARK 465 DT G 13 REMARK 465 DA G 14 REMARK 465 DT G 15 REMARK 465 DA G 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 104 O HOH F 118 2.15 REMARK 500 OP2 DA G 6 O HOH G 101 2.16 REMARK 500 OE2 GLU A 31 OG1 THR A 97 2.18 REMARK 500 N7 DA F 8 O HOH F 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 15 O3' DT D 15 C3' -0.056 REMARK 500 DA E 13 O3' DA E 13 C3' -0.038 REMARK 500 DA F 10 O3' DA F 10 C3' -0.053 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 13 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT E 14 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 7 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 56.46 -144.90 REMARK 500 LYS A 95 15.59 58.56 REMARK 500 ASN B 91 55.17 -146.26 REMARK 500 ASN C 91 55.77 -147.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS C 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IIP RELATED DB: PDB REMARK 900 APO-FORM HRP3 PWWP REMARK 900 RELATED ID: 6IIR RELATED DB: PDB REMARK 900 HRP3 PWWP WITH A BOUND GC-RICH DNA COMPLEX REMARK 900 RELATED ID: 6IIS RELATED DB: PDB REMARK 900 HRP3 PWWP WITH BOTH A BOUND DNA AND AN H3K36ME3 PEPTIDE REMARK 900 RELATED ID: 6IIT RELATED DB: PDB REMARK 900 HRP3 PWWP WITH BOTH A BOUND DNA AND AN H3K36ME2 PEPTIDE DBREF 6IIQ A 1 99 UNP Q9Y3E1 HDGR3_HUMAN 1 99 DBREF 6IIQ B 1 99 UNP Q9Y3E1 HDGR3_HUMAN 1 99 DBREF 6IIQ C 1 99 UNP Q9Y3E1 HDGR3_HUMAN 1 99 DBREF 6IIQ D 11 26 PDB 6IIQ 6IIQ 11 26 DBREF 6IIQ E 10 25 PDB 6IIQ 6IIQ 10 25 DBREF 6IIQ F 1 16 PDB 6IIQ 6IIQ 1 16 DBREF 6IIQ G 1 16 PDB 6IIQ 6IIQ 1 16 SEQADV 6IIQ SER A 0 UNP Q9Y3E1 EXPRESSION TAG SEQADV 6IIQ SER B 0 UNP Q9Y3E1 EXPRESSION TAG SEQADV 6IIQ SER C 0 UNP Q9Y3E1 EXPRESSION TAG SEQRES 1 A 100 SER MET ALA ARG PRO ARG PRO ARG GLU TYR LYS ALA GLY SEQRES 2 A 100 ASP LEU VAL PHE ALA LYS MET LYS GLY TYR PRO HIS TRP SEQRES 3 A 100 PRO ALA ARG ILE ASP GLU LEU PRO GLU GLY ALA VAL LYS SEQRES 4 A 100 PRO PRO ALA ASN LYS TYR PRO ILE PHE PHE PHE GLY THR SEQRES 5 A 100 HIS GLU THR ALA PHE LEU GLY PRO LYS ASP LEU PHE PRO SEQRES 6 A 100 TYR LYS GLU TYR LYS ASP LYS PHE GLY LYS SER ASN LYS SEQRES 7 A 100 ARG LYS GLY PHE ASN GLU GLY LEU TRP GLU ILE GLU ASN SEQRES 8 A 100 ASN PRO GLY VAL LYS PHE THR GLY TYR SEQRES 1 B 100 SER MET ALA ARG PRO ARG PRO ARG GLU TYR LYS ALA GLY SEQRES 2 B 100 ASP LEU VAL PHE ALA LYS MET LYS GLY TYR PRO HIS TRP SEQRES 3 B 100 PRO ALA ARG ILE ASP GLU LEU PRO GLU GLY ALA VAL LYS SEQRES 4 B 100 PRO PRO ALA ASN LYS TYR PRO ILE PHE PHE PHE GLY THR SEQRES 5 B 100 HIS GLU THR ALA PHE LEU GLY PRO LYS ASP LEU PHE PRO SEQRES 6 B 100 TYR LYS GLU TYR LYS ASP LYS PHE GLY LYS SER ASN LYS SEQRES 7 B 100 ARG LYS GLY PHE ASN GLU GLY LEU TRP GLU ILE GLU ASN SEQRES 8 B 100 ASN PRO GLY VAL LYS PHE THR GLY TYR SEQRES 1 C 100 SER MET ALA ARG PRO ARG PRO ARG GLU TYR LYS ALA GLY SEQRES 2 C 100 ASP LEU VAL PHE ALA LYS MET LYS GLY TYR PRO HIS TRP SEQRES 3 C 100 PRO ALA ARG ILE ASP GLU LEU PRO GLU GLY ALA VAL LYS SEQRES 4 C 100 PRO PRO ALA ASN LYS TYR PRO ILE PHE PHE PHE GLY THR SEQRES 5 C 100 HIS GLU THR ALA PHE LEU GLY PRO LYS ASP LEU PHE PRO SEQRES 6 C 100 TYR LYS GLU TYR LYS ASP LYS PHE GLY LYS SER ASN LYS SEQRES 7 C 100 ARG LYS GLY PHE ASN GLU GLY LEU TRP GLU ILE GLU ASN SEQRES 8 C 100 ASN PRO GLY VAL LYS PHE THR GLY TYR SEQRES 1 D 16 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 2 D 16 DA DT DA SEQRES 1 E 16 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 2 E 16 DA DT DA SEQRES 1 F 16 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 2 F 16 DA DT DA SEQRES 1 G 16 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 2 G 16 DA DT DA HET MLA A 101 7 HET TRS A 102 8 HET MLA B 101 7 HET TRS B 102 8 HET MLA C 101 7 HET TRS C 102 8 HETNAM MLA MALONIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN TRS TRIS BUFFER FORMUL 8 MLA 3(C3 H4 O4) FORMUL 9 TRS 3(C4 H12 N O3 1+) FORMUL 14 HOH *186(H2 O) HELIX 1 AA1 GLY A 58 LYS A 60 5 3 HELIX 2 AA2 TYR A 65 GLY A 73 1 9 HELIX 3 AA3 GLY A 80 ASN A 91 1 12 HELIX 4 AA4 GLY B 58 LYS B 60 5 3 HELIX 5 AA5 TYR B 65 GLY B 73 1 9 HELIX 6 AA6 GLY B 80 ASN B 91 1 12 HELIX 7 AA7 GLY C 58 LYS C 60 5 3 HELIX 8 AA8 TYR C 65 GLY C 73 1 9 HELIX 9 AA9 GLY C 80 ASN C 91 1 12 SHEET 1 AA1 5 THR A 54 LEU A 57 0 SHEET 2 AA1 5 TYR A 44 PHE A 48 -1 N ILE A 46 O ALA A 55 SHEET 3 AA1 5 TRP A 25 ILE A 29 -1 N ARG A 28 O PHE A 47 SHEET 4 AA1 5 LEU A 14 ALA A 17 -1 N VAL A 15 O ALA A 27 SHEET 5 AA1 5 LEU A 62 PRO A 64 -1 O PHE A 63 N PHE A 16 SHEET 1 AA2 5 THR B 54 LEU B 57 0 SHEET 2 AA2 5 TYR B 44 PHE B 48 -1 N ILE B 46 O ALA B 55 SHEET 3 AA2 5 TRP B 25 ILE B 29 -1 N ARG B 28 O PHE B 47 SHEET 4 AA2 5 LEU B 14 ALA B 17 -1 N VAL B 15 O ALA B 27 SHEET 5 AA2 5 LEU B 62 PRO B 64 -1 O PHE B 63 N PHE B 16 SHEET 1 AA3 5 THR C 54 LEU C 57 0 SHEET 2 AA3 5 TYR C 44 PHE C 48 -1 N ILE C 46 O ALA C 55 SHEET 3 AA3 5 TRP C 25 ILE C 29 -1 N ARG C 28 O PHE C 47 SHEET 4 AA3 5 LEU C 14 ALA C 17 -1 N VAL C 15 O ALA C 27 SHEET 5 AA3 5 LEU C 62 PRO C 64 -1 O PHE C 63 N PHE C 16 SITE 1 AC1 6 MET A 19 TYR A 22 TRP A 25 PHE A 48 SITE 2 AC1 6 THR A 51 GLU A 53 SITE 1 AC2 5 ARG A 5 PRO A 6 PRO A 59 LYS A 60 SITE 2 AC2 5 HOH A 221 SITE 1 AC3 6 MET B 19 TYR B 22 TRP B 25 PHE B 48 SITE 2 AC3 6 THR B 51 GLU B 53 SITE 1 AC4 4 ARG B 5 PRO B 6 ARG B 7 LYS B 60 SITE 1 AC5 6 MET C 19 TYR C 22 TRP C 25 PHE C 48 SITE 2 AC5 6 THR C 51 GLU C 53 SITE 1 AC6 4 ARG C 5 PRO C 6 ARG C 7 PRO C 59 CRYST1 57.426 33.556 201.151 90.00 90.06 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017414 0.000000 0.000019 0.00000 SCALE2 0.000000 0.029801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004971 0.00000