HEADER TRANSFERASE/INHIBITOR 10-OCT-18 6IJL TITLE CRYSTAL STRUCTURE OF SMYD3 IN COMPLEX WITH COVALENT INHIBITOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3; COMPND 5 EC: 2.1.1.43; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVALENT INHIBITOR, METHYLTRANSFERASE, METHYLTRANSFERASE INHIBITOR, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.BABURAJENDRAN,J.JOY REVDAT 2 27-MAR-24 6IJL 1 REMARK REVDAT 1 14-AUG-19 6IJL 0 JRNL AUTH C.HUANG,S.S.LIEW,G.R.LIN,A.POULSEN,M.J.Y.ANG,B.C.S.CHIA, JRNL AUTH 2 S.Y.CHEW,Z.P.KWEK,J.L.K.WEE,E.H.ONG,P.RETNA,N.BABURAJENDRAN, JRNL AUTH 3 R.LI,W.YU,X.KOH-STENTA,A.NGO,S.MANESH,J.FULWOOD,Z.KE, JRNL AUTH 4 H.H.CHUNG,S.SEPRAMANIAM,X.H.CHEW,N.DINIE,M.A.LEE,Y.S.CHEW, JRNL AUTH 5 C.B.LOW,V.PENDHARKAR,V.MANOHARAN,S.VUDDAGIRI, JRNL AUTH 6 K.SANGTHONGPITAG,J.JOY,A.MATTER,J.HILL,T.H.KELLER,K.FOO JRNL TITL DISCOVERY OF IRREVERSIBLE INHIBITORS TARGETING HISTONE JRNL TITL 2 METHYLTRANSFERASE, SMYD3. JRNL REF ACS MED.CHEM.LETT. V. 10 978 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31223458 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00170 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 18146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.281 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7120 - 5.5247 1.00 1407 156 0.1823 0.1941 REMARK 3 2 5.5247 - 4.3867 1.00 1327 147 0.1963 0.2047 REMARK 3 3 4.3867 - 3.8326 0.98 1276 148 0.2485 0.2734 REMARK 3 4 3.8326 - 3.4824 0.92 1204 126 0.3371 0.3588 REMARK 3 5 3.4824 - 3.2329 0.93 1210 143 0.3118 0.3761 REMARK 3 6 3.2329 - 3.0423 0.99 1294 134 0.2908 0.3425 REMARK 3 7 3.0423 - 2.8900 1.00 1275 150 0.2855 0.3259 REMARK 3 8 2.8900 - 2.7642 1.00 1278 139 0.3068 0.3551 REMARK 3 9 2.7642 - 2.6579 0.91 1172 124 0.3963 0.4755 REMARK 3 10 2.6579 - 2.5661 0.89 1147 119 0.4054 0.4532 REMARK 3 11 2.5661 - 2.4859 1.00 1286 158 0.3144 0.3435 REMARK 3 12 2.4859 - 2.4149 1.00 1277 130 0.3124 0.3924 REMARK 3 13 2.4149 - 2.3513 0.94 1182 137 0.2752 0.3367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3477 REMARK 3 ANGLE : 1.288 4690 REMARK 3 CHIRALITY : 0.048 521 REMARK 3 PLANARITY : 0.007 602 REMARK 3 DIHEDRAL : 16.998 1301 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 73.5347 131.9699 120.3688 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1528 REMARK 3 T33: 0.1471 T12: -0.0048 REMARK 3 T13: 0.0049 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5601 L22: 0.8639 REMARK 3 L33: 0.5661 L12: -0.2799 REMARK 3 L13: -0.1661 L23: 0.3349 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0602 S13: 0.0599 REMARK 3 S21: -0.1052 S22: -0.0090 S23: -0.0522 REMARK 3 S31: -0.0571 S32: 0.0362 S33: -0.0308 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 17% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.60600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.69850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.11600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.69850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.60600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.11600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 426 REMARK 465 ALA A 427 REMARK 465 SER A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLN A 64 CG CD OE1 NE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ARG A 401 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 406 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 422 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 186 CAR A8U A 501 1.76 REMARK 500 OG SER A 92 OE1 GLU A 157 2.12 REMARK 500 N GLN A 160 OE1 GLN A 164 2.16 REMARK 500 OD2 ASP A 332 OH TYR A 358 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 17 N - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 15.73 -147.20 REMARK 500 ASN A 132 28.79 49.00 REMARK 500 ASN A 181 -0.18 -140.12 REMARK 500 MET A 190 39.40 71.43 REMARK 500 LYS A 271 -9.41 82.49 REMARK 500 HIS A 404 -64.13 -103.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 121.1 REMARK 620 3 CYS A 75 SG 100.1 115.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 102.8 REMARK 620 3 HIS A 83 NE2 125.0 127.0 REMARK 620 4 CYS A 87 SG 100.2 117.1 78.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 107.8 REMARK 620 3 CYS A 263 SG 115.6 113.3 REMARK 620 4 CYS A 266 SG 102.0 110.0 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A8U A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XXD RELATED DB: PDB REMARK 900 RELATED ID: 5XXG RELATED DB: PDB REMARK 900 RELATED ID: 5XXJ RELATED DB: PDB REMARK 900 RELATED ID: 5YJO RELATED DB: PDB DBREF 6IJL A 1 428 UNP Q9H7B4 SMYD3_HUMAN 1 428 SEQADV 6IJL ASN A 13 UNP Q9H7B4 LYS 13 ENGINEERED MUTATION SEQADV 6IJL ARG A 140 UNP Q9H7B4 LYS 140 ENGINEERED MUTATION SEQRES 1 A 428 MET GLU PRO LEU LYS VAL GLU LYS PHE ALA THR ALA ASN SEQRES 2 A 428 ARG GLY ASN GLY LEU ARG ALA VAL THR PRO LEU ARG PRO SEQRES 3 A 428 GLY GLU LEU LEU PHE ARG SER ASP PRO LEU ALA TYR THR SEQRES 4 A 428 VAL CYS LYS GLY SER ARG GLY VAL VAL CYS ASP ARG CYS SEQRES 5 A 428 LEU LEU GLY LYS GLU LYS LEU MET ARG CYS SER GLN CYS SEQRES 6 A 428 ARG VAL ALA LYS TYR CYS SER ALA LYS CYS GLN LYS LYS SEQRES 7 A 428 ALA TRP PRO ASP HIS LYS ARG GLU CYS LYS CYS LEU LYS SEQRES 8 A 428 SER CYS LYS PRO ARG TYR PRO PRO ASP SER VAL ARG LEU SEQRES 9 A 428 LEU GLY ARG VAL VAL PHE LYS LEU MET ASP GLY ALA PRO SEQRES 10 A 428 SER GLU SER GLU LYS LEU TYR SER PHE TYR ASP LEU GLU SEQRES 11 A 428 SER ASN ILE ASN LYS LEU THR GLU ASP ARG LYS GLU GLY SEQRES 12 A 428 LEU ARG GLN LEU VAL MET THR PHE GLN HIS PHE MET ARG SEQRES 13 A 428 GLU GLU ILE GLN ASP ALA SER GLN LEU PRO PRO ALA PHE SEQRES 14 A 428 ASP LEU PHE GLU ALA PHE ALA LYS VAL ILE CYS ASN SER SEQRES 15 A 428 PHE THR ILE CYS ASN ALA GLU MET GLN GLU VAL GLY VAL SEQRES 16 A 428 GLY LEU TYR PRO SER ILE SER LEU LEU ASN HIS SER CYS SEQRES 17 A 428 ASP PRO ASN CYS SER ILE VAL PHE ASN GLY PRO HIS LEU SEQRES 18 A 428 LEU LEU ARG ALA VAL ARG ASP ILE GLU VAL GLY GLU GLU SEQRES 19 A 428 LEU THR ILE CYS TYR LEU ASP MET LEU MET THR SER GLU SEQRES 20 A 428 GLU ARG ARG LYS GLN LEU ARG ASP GLN TYR CYS PHE GLU SEQRES 21 A 428 CYS ASP CYS PHE ARG CYS GLN THR GLN ASP LYS ASP ALA SEQRES 22 A 428 ASP MET LEU THR GLY ASP GLU GLN VAL TRP LYS GLU VAL SEQRES 23 A 428 GLN GLU SER LEU LYS LYS ILE GLU GLU LEU LYS ALA HIS SEQRES 24 A 428 TRP LYS TRP GLU GLN VAL LEU ALA MET CYS GLN ALA ILE SEQRES 25 A 428 ILE SER SER ASN SER GLU ARG LEU PRO ASP ILE ASN ILE SEQRES 26 A 428 TYR GLN LEU LYS VAL LEU ASP CYS ALA MET ASP ALA CYS SEQRES 27 A 428 ILE ASN LEU GLY LEU LEU GLU GLU ALA LEU PHE TYR GLY SEQRES 28 A 428 THR ARG THR MET GLU PRO TYR ARG ILE PHE PHE PRO GLY SEQRES 29 A 428 SER HIS PRO VAL ARG GLY VAL GLN VAL MET LYS VAL GLY SEQRES 30 A 428 LYS LEU GLN LEU HIS GLN GLY MET PHE PRO GLN ALA MET SEQRES 31 A 428 LYS ASN LEU ARG LEU ALA PHE ASP ILE MET ARG VAL THR SEQRES 32 A 428 HIS GLY ARG GLU HIS SER LEU ILE GLU ASP LEU ILE LEU SEQRES 33 A 428 LEU LEU GLU GLU CYS ASP ALA ASN ILE ARG ALA SER HET A8U A 501 35 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET SAM A 505 27 HETNAM A8U PROPYL (2~{R})-4-[2-[4-(1-AZANYLCYCLOPROPYL) HETNAM 2 A8U PHENYL]QUINOLIN-7-YL]CARBONYL-2-METHYL-PIPERAZINE-1- HETNAM 3 A8U CARBOXYLATE HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 A8U C28 H32 N4 O3 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 SAM C15 H22 N6 O5 S FORMUL 7 HOH *100(H2 O) HELIX 1 AA1 SER A 72 TRP A 80 1 9 HELIX 2 AA2 HIS A 83 SER A 92 1 10 HELIX 3 AA3 PRO A 99 GLY A 115 1 17 HELIX 4 AA4 SER A 118 LYS A 122 5 5 HELIX 5 AA5 ASN A 132 LEU A 136 5 5 HELIX 6 AA6 THR A 137 ARG A 156 1 20 HELIX 7 AA7 ASP A 161 LEU A 165 5 5 HELIX 8 AA8 ASP A 170 CYS A 180 1 11 HELIX 9 AA9 SER A 200 LEU A 204 5 5 HELIX 10 AB1 THR A 245 CYS A 258 1 14 HELIX 11 AB2 CYS A 263 THR A 268 1 6 HELIX 12 AB3 ALA A 273 THR A 277 5 5 HELIX 13 AB4 ASP A 279 HIS A 299 1 21 HELIX 14 AB5 LYS A 301 SER A 314 1 14 HELIX 15 AB6 ASN A 324 ASN A 340 1 17 HELIX 16 AB7 LEU A 343 PHE A 362 1 20 HELIX 17 AB8 HIS A 366 GLN A 383 1 18 HELIX 18 AB9 MET A 385 HIS A 404 1 20 HELIX 19 AC1 HIS A 408 ILE A 425 1 18 SHEET 1 AA1 2 VAL A 6 LYS A 8 0 SHEET 2 AA1 2 LEU A 18 ALA A 20 -1 O ARG A 19 N GLU A 7 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N PHE A 31 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N ASN A 217 O HIS A 220 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O LEU A 197 N ALA A 37 SHEET 3 AA3 3 PHE A 183 CYS A 186 -1 N PHE A 183 O GLY A 196 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 SHEET 1 AA5 2 ASN A 205 HIS A 206 0 SHEET 2 AA5 2 THR A 236 ILE A 237 1 O ILE A 237 N ASN A 205 LINK SG CYS A 49 ZN ZN A 502 1555 1555 2.32 LINK SG CYS A 52 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 62 ZN ZN A 504 1555 1555 2.30 LINK SG CYS A 65 ZN ZN A 504 1555 1555 2.29 LINK SG CYS A 75 ZN ZN A 502 1555 1555 2.33 LINK NE2 HIS A 83 ZN ZN A 504 1555 1555 2.01 LINK SG CYS A 87 ZN ZN A 504 1555 1555 2.29 LINK SG CYS A 208 ZN ZN A 503 1555 1555 2.27 LINK SG CYS A 261 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 263 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 266 ZN ZN A 503 1555 1555 2.31 CISPEP 1 LYS A 94 PRO A 95 0 12.18 SITE 1 AC1 17 SER A 182 PHE A 183 THR A 184 CYS A 186 SITE 2 AC1 17 MET A 190 ILE A 214 PHE A 216 ILE A 237 SITE 3 AC1 17 CYS A 238 TYR A 239 ASP A 241 TYR A 257 SITE 4 AC1 17 ASP A 332 TYR A 358 SAM A 505 HOH A 628 SITE 5 AC1 17 HOH A 682 SITE 1 AC2 4 CYS A 49 CYS A 52 CYS A 71 CYS A 75 SITE 1 AC3 4 CYS A 208 CYS A 261 CYS A 263 CYS A 266 SITE 1 AC4 4 CYS A 62 CYS A 65 HIS A 83 CYS A 87 SITE 1 AC5 21 ARG A 14 GLY A 15 ASN A 16 TYR A 124 SITE 2 AC5 21 GLU A 130 ASN A 132 CYS A 180 ASN A 181 SITE 3 AC5 21 SER A 202 LEU A 203 LEU A 204 ASN A 205 SITE 4 AC5 21 HIS A 206 TYR A 239 TYR A 257 PHE A 259 SITE 5 AC5 21 A8U A 501 HOH A 609 HOH A 655 HOH A 667 SITE 6 AC5 21 HOH A 671 CRYST1 61.212 66.232 107.397 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009311 0.00000