HEADER SIGNALING PROTEIN 16-OCT-18 6IKI TITLE CRYSTAL STRUCTURE OF YFIB(W55L) COMPND MOL_ID: 1; COMPND 2 MOLECULE: YFIB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: YFIB, PA1119; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SIGNALLING SYSTEM; PEPTIDOGLYCAN BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LI,Q.ZHANG,M.BARTLAM REVDAT 2 22-NOV-23 6IKI 1 REMARK REVDAT 1 13-MAR-19 6IKI 0 JRNL AUTH S.LI,T.LI,X.TENG,X.LOU,Y.XU,Q.ZHANG,M.BARTLAM JRNL TITL STRUCTURAL ANALYSIS OF ACTIVATING MUTANTS OF YFIB FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA PAO1. JRNL REF BIOCHEM. BIOPHYS. RES. V. 506 997 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 30404734 JRNL DOI 10.1016/J.BBRC.2018.10.190 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5721 - 4.9023 0.90 1253 145 0.1556 0.2209 REMARK 3 2 4.9023 - 3.8919 0.90 1259 141 0.1532 0.1776 REMARK 3 3 3.8919 - 3.4001 0.90 1219 143 0.1838 0.2423 REMARK 3 4 3.4001 - 3.0893 0.90 1262 134 0.2218 0.2703 REMARK 3 5 3.0893 - 2.8679 0.89 1222 146 0.2473 0.3020 REMARK 3 6 2.8679 - 2.6989 0.90 1243 139 0.2600 0.3443 REMARK 3 7 2.6989 - 2.5637 0.90 1245 138 0.2817 0.3240 REMARK 3 8 2.5637 - 2.4521 0.90 1239 136 0.2708 0.2996 REMARK 3 9 2.4521 - 2.3577 0.90 1217 137 0.2857 0.3252 REMARK 3 10 2.3577 - 2.2764 0.90 1259 137 0.2920 0.3360 REMARK 3 11 2.2764 - 2.2052 0.90 1224 137 0.3046 0.3387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2099 REMARK 3 ANGLE : 0.983 2820 REMARK 3 CHIRALITY : 0.053 312 REMARK 3 PLANARITY : 0.005 383 REMARK 3 DIHEDRAL : 15.450 1303 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4125 17.2578 3.9469 REMARK 3 T TENSOR REMARK 3 T11: 1.2658 T22: 0.5000 REMARK 3 T33: -0.0876 T12: -0.2540 REMARK 3 T13: 0.2039 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 2.9148 L22: 0.6212 REMARK 3 L33: 0.0507 L12: -0.8010 REMARK 3 L13: 0.2499 L23: -0.1668 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.0253 S13: 0.3436 REMARK 3 S21: 0.7081 S22: 0.2240 S23: -0.1534 REMARK 3 S31: -1.4990 S32: 0.6833 S33: -0.5371 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0927 5.7061 14.6434 REMARK 3 T TENSOR REMARK 3 T11: 0.4778 T22: 0.4006 REMARK 3 T33: 0.3011 T12: 0.0727 REMARK 3 T13: 0.0470 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0926 L22: 0.5955 REMARK 3 L33: 1.5144 L12: 0.2287 REMARK 3 L13: 0.3178 L23: 0.4819 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.1656 S13: 0.0877 REMARK 3 S21: 0.0906 S22: 0.0884 S23: 0.2529 REMARK 3 S31: -0.5073 S32: -0.2385 S33: 0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6984 8.0167 2.1074 REMARK 3 T TENSOR REMARK 3 T11: 0.4221 T22: 0.5097 REMARK 3 T33: 0.3850 T12: 0.0725 REMARK 3 T13: -0.0163 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 1.0358 L22: 0.1366 REMARK 3 L33: 1.1996 L12: 0.0572 REMARK 3 L13: 0.2409 L23: 0.3348 REMARK 3 S TENSOR REMARK 3 S11: 0.4112 S12: 0.9462 S13: 0.3359 REMARK 3 S21: -0.2235 S22: 0.1133 S23: 0.5068 REMARK 3 S31: -0.7658 S32: -1.0645 S33: 0.0202 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4989 4.1315 15.1544 REMARK 3 T TENSOR REMARK 3 T11: 0.3253 T22: 0.3929 REMARK 3 T33: 0.2811 T12: -0.0281 REMARK 3 T13: -0.0181 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.2245 L22: 1.5657 REMARK 3 L33: 0.8438 L12: -0.1277 REMARK 3 L13: 0.8757 L23: 0.2713 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.0090 S13: -0.1375 REMARK 3 S21: 0.0295 S22: -0.0428 S23: -0.0969 REMARK 3 S31: -0.0433 S32: 0.7833 S33: 0.0022 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2752 -2.1790 13.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.3148 REMARK 3 T33: 0.3175 T12: 0.0415 REMARK 3 T13: 0.0093 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6753 L22: 0.9257 REMARK 3 L33: 0.7382 L12: 0.6200 REMARK 3 L13: -0.8256 L23: 0.1796 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.1187 S13: -0.1700 REMARK 3 S21: 0.1292 S22: -0.0549 S23: -0.0746 REMARK 3 S31: 0.1925 S32: -0.0036 S33: -0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9023 6.7197 17.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.5108 T22: 0.3879 REMARK 3 T33: 0.2528 T12: -0.0240 REMARK 3 T13: 0.0305 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.1011 L22: 1.3337 REMARK 3 L33: 2.5153 L12: -0.1672 REMARK 3 L13: 0.5224 L23: -1.7468 REMARK 3 S TENSOR REMARK 3 S11: 0.2665 S12: -0.0227 S13: 0.0333 REMARK 3 S21: 0.1679 S22: -0.0298 S23: -0.0246 REMARK 3 S31: -0.9616 S32: 0.7566 S33: 0.0087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7664 -18.8439 -0.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.6812 T22: 0.5438 REMARK 3 T33: 1.1859 T12: 0.0478 REMARK 3 T13: -0.4338 T23: 0.1623 REMARK 3 L TENSOR REMARK 3 L11: 2.6912 L22: 0.7396 REMARK 3 L33: 0.1500 L12: 0.8611 REMARK 3 L13: -0.0643 L23: 0.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.3695 S12: 0.4948 S13: -0.4167 REMARK 3 S21: 0.0170 S22: 0.7257 S23: 0.2053 REMARK 3 S31: 0.3480 S32: -0.6328 S33: -0.0447 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4677 -22.6924 8.0209 REMARK 3 T TENSOR REMARK 3 T11: 1.1645 T22: 0.5196 REMARK 3 T33: 1.0782 T12: -0.0692 REMARK 3 T13: -0.6790 T23: 0.0764 REMARK 3 L TENSOR REMARK 3 L11: 0.5413 L22: 1.2066 REMARK 3 L33: 3.3962 L12: 0.0101 REMARK 3 L13: 0.6798 L23: -1.7379 REMARK 3 S TENSOR REMARK 3 S11: 0.6817 S12: -0.2578 S13: -0.5420 REMARK 3 S21: 0.5481 S22: 0.2842 S23: -0.1983 REMARK 3 S31: 0.9284 S32: -0.0265 S33: 0.9864 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3663 -13.9264 10.9906 REMARK 3 T TENSOR REMARK 3 T11: 0.4513 T22: 0.4306 REMARK 3 T33: 0.6126 T12: 0.0713 REMARK 3 T13: -0.1081 T23: -0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.6420 L22: 0.8659 REMARK 3 L33: 0.6943 L12: -0.7476 REMARK 3 L13: 0.3083 L23: -0.2668 REMARK 3 S TENSOR REMARK 3 S11: 0.3124 S12: 0.2915 S13: -0.9250 REMARK 3 S21: -0.0840 S22: 0.2584 S23: 0.2000 REMARK 3 S31: 0.4321 S32: 0.4480 S33: 0.0064 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4172 -9.8470 1.0405 REMARK 3 T TENSOR REMARK 3 T11: 0.5402 T22: 0.5707 REMARK 3 T33: 0.5474 T12: -0.0085 REMARK 3 T13: -0.1355 T23: -0.0998 REMARK 3 L TENSOR REMARK 3 L11: 0.1056 L22: 0.3835 REMARK 3 L33: 0.4402 L12: -0.1180 REMARK 3 L13: -0.0902 L23: -0.2131 REMARK 3 S TENSOR REMARK 3 S11: 0.5640 S12: 0.5377 S13: -0.3872 REMARK 3 S21: -0.7759 S22: -0.0800 S23: 0.5093 REMARK 3 S31: 0.0640 S32: 0.5237 S33: -0.0008 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4955 -14.1984 16.1262 REMARK 3 T TENSOR REMARK 3 T11: 0.7624 T22: 0.5264 REMARK 3 T33: 0.7830 T12: 0.0174 REMARK 3 T13: -0.0374 T23: 0.1233 REMARK 3 L TENSOR REMARK 3 L11: 0.9989 L22: 1.8926 REMARK 3 L33: 1.2227 L12: 0.5756 REMARK 3 L13: -0.7236 L23: 0.6696 REMARK 3 S TENSOR REMARK 3 S11: 0.2997 S12: -0.7920 S13: -0.2909 REMARK 3 S21: 0.6278 S22: 0.0609 S23: 0.6379 REMARK 3 S31: 0.3212 S32: -0.7049 S33: -0.0011 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5812 -7.7327 17.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.5382 T22: 0.4959 REMARK 3 T33: 0.5289 T12: -0.0203 REMARK 3 T13: 0.0198 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.0182 L22: 0.9680 REMARK 3 L33: 0.5084 L12: 0.3057 REMARK 3 L13: -0.0939 L23: 0.6357 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.3362 S13: -0.0458 REMARK 3 S21: 0.4242 S22: 0.0264 S23: 0.2808 REMARK 3 S31: 0.1599 S32: -0.2277 S33: 0.0013 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0203 -5.9077 12.1669 REMARK 3 T TENSOR REMARK 3 T11: 0.5317 T22: 0.5641 REMARK 3 T33: 0.7060 T12: 0.0815 REMARK 3 T13: 0.1240 T23: 0.1336 REMARK 3 L TENSOR REMARK 3 L11: 0.5188 L22: 0.1207 REMARK 3 L33: 0.1910 L12: 0.1978 REMARK 3 L13: 0.2344 L23: 0.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: -0.5359 S13: -0.0626 REMARK 3 S21: 0.0073 S22: 0.2344 S23: 0.7925 REMARK 3 S31: 0.0777 S32: -0.5515 S33: -0.0233 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3176 -23.9915 23.6438 REMARK 3 T TENSOR REMARK 3 T11: 0.9155 T22: 0.7392 REMARK 3 T33: 1.0063 T12: -0.1335 REMARK 3 T13: -0.1662 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 0.0843 L22: 0.0450 REMARK 3 L33: 0.0909 L12: 0.0575 REMARK 3 L13: -0.0901 L23: -0.0717 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.6455 S13: -0.7406 REMARK 3 S21: 0.1598 S22: 0.6864 S23: -0.3102 REMARK 3 S31: -0.0541 S32: -0.1033 S33: 0.0065 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9946 -20.0352 15.6881 REMARK 3 T TENSOR REMARK 3 T11: 0.6630 T22: 0.3132 REMARK 3 T33: 1.1020 T12: -0.0145 REMARK 3 T13: -0.2401 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 0.2611 L22: 0.6635 REMARK 3 L33: 1.5837 L12: 0.1506 REMARK 3 L13: -0.4029 L23: 0.5326 REMARK 3 S TENSOR REMARK 3 S11: 0.3613 S12: -0.3430 S13: -0.6055 REMARK 3 S21: 0.4248 S22: 0.6299 S23: 0.5426 REMARK 3 S31: 0.1046 S32: 0.0068 S33: 0.0501 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZHW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG-400, 0.1M CACODYLATE PH REMARK 280 6.5, 0.2M LI2SO4, 7.5%(W/V) GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.46700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.73350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.20050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 HIS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 PHE A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 CYS A 26 REMARK 465 GLN A 27 REMARK 465 THR A 28 REMARK 465 LYS A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 6 REMARK 465 HIS B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 ARG B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 PHE B 17 REMARK 465 SER B 18 REMARK 465 LEU B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 ALA B 24 REMARK 465 GLY B 25 REMARK 465 CYS B 26 REMARK 465 GLN B 27 REMARK 465 THR B 28 REMARK 465 LYS B 29 REMARK 465 PRO B 30 REMARK 465 PRO B 31 REMARK 465 GLN B 32 REMARK 465 THR B 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 126 O HOH B 301 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 69 -73.69 -84.58 REMARK 500 ASP A 102 -162.70 -77.40 REMARK 500 GLU B 53 17.26 46.92 REMARK 500 LEU B 69 -76.35 -89.20 REMARK 500 ASP B 102 -149.23 -82.94 REMARK 500 ASN B 149 -9.79 79.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 6IKI A 1 168 UNP Q9I4L6 Q9I4L6_PSEAE 1 168 DBREF 6IKI B 1 168 UNP Q9I4L6 Q9I4L6_PSEAE 1 168 SEQADV 6IKI LEU A 55 UNP Q9I4L6 TRP 55 ENGINEERED MUTATION SEQADV 6IKI LEU B 55 UNP Q9I4L6 TRP 55 ENGINEERED MUTATION SEQRES 1 A 168 MET LEU PRO GLN ARG LEU HIS PRO SER ARG LEU LEU ALA SEQRES 2 A 168 LEU ALA LEU PHE SER LEU VAL LEU GLY LEU ALA GLY CYS SEQRES 3 A 168 GLN THR LYS PRO PRO GLN THR GLY LEU SER ALA GLU GLN SEQRES 4 A 168 ILE ALA VAL LEU GLN GLU GLN GLY PHE GLU LEU ARG ASP SEQRES 5 A 168 GLU GLY LEU GLU PHE GLY MET SER SER LYS VAL LEU PHE SEQRES 6 A 168 GLY ASN ASN LEU ASP ARG LEU ASN PRO ASP SER ARG ASN SEQRES 7 A 168 THR LEU THR LYS ILE ALA ARG ALA LEU LEU ALA VAL ASP SEQRES 8 A 168 ILE ASP LYS VAL ARG LEU GLU GLY HIS THR ASP ASN TYR SEQRES 9 A 168 GLY ASP GLU GLY TYR ASN GLN LYS LEU SER GLU ARG ARG SEQRES 10 A 168 ALA GLU SER VAL ALA ALA VAL PHE ARG GLU ALA GLY MET SEQRES 11 A 168 PRO ALA ALA ASN ILE GLU VAL ARG GLY LEU GLY MET SER SEQRES 12 A 168 LYS PRO VAL ALA ASP ASN LYS THR ARG ALA GLY ARG SER SEQRES 13 A 168 GLU ASN ARG ARG VAL ALA ILE ILE VAL PRO ALA GLU SEQRES 1 B 168 MET LEU PRO GLN ARG LEU HIS PRO SER ARG LEU LEU ALA SEQRES 2 B 168 LEU ALA LEU PHE SER LEU VAL LEU GLY LEU ALA GLY CYS SEQRES 3 B 168 GLN THR LYS PRO PRO GLN THR GLY LEU SER ALA GLU GLN SEQRES 4 B 168 ILE ALA VAL LEU GLN GLU GLN GLY PHE GLU LEU ARG ASP SEQRES 5 B 168 GLU GLY LEU GLU PHE GLY MET SER SER LYS VAL LEU PHE SEQRES 6 B 168 GLY ASN ASN LEU ASP ARG LEU ASN PRO ASP SER ARG ASN SEQRES 7 B 168 THR LEU THR LYS ILE ALA ARG ALA LEU LEU ALA VAL ASP SEQRES 8 B 168 ILE ASP LYS VAL ARG LEU GLU GLY HIS THR ASP ASN TYR SEQRES 9 B 168 GLY ASP GLU GLY TYR ASN GLN LYS LEU SER GLU ARG ARG SEQRES 10 B 168 ALA GLU SER VAL ALA ALA VAL PHE ARG GLU ALA GLY MET SEQRES 11 B 168 PRO ALA ALA ASN ILE GLU VAL ARG GLY LEU GLY MET SER SEQRES 12 B 168 LYS PRO VAL ALA ASP ASN LYS THR ARG ALA GLY ARG SER SEQRES 13 B 168 GLU ASN ARG ARG VAL ALA ILE ILE VAL PRO ALA GLU HET GOL A 201 6 HET SO4 B 201 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *65(H2 O) HELIX 1 AA1 ALA A 37 GLY A 47 1 11 HELIX 2 AA2 SER A 61 GLY A 66 1 6 HELIX 3 AA3 ASN A 73 VAL A 90 1 18 HELIX 4 AA4 ASP A 106 GLY A 129 1 24 HELIX 5 AA5 PRO A 131 ALA A 133 5 3 HELIX 6 AA6 THR A 151 ARG A 159 1 9 HELIX 7 AA7 SER B 36 GLY B 47 1 12 HELIX 8 AA8 SER B 61 GLY B 66 1 6 HELIX 9 AA9 ASN B 73 VAL B 90 1 18 HELIX 10 AB1 ASP B 106 ALA B 128 1 23 HELIX 11 AB2 PRO B 131 ALA B 133 5 3 HELIX 12 AB3 THR B 151 ARG B 159 1 9 SHEET 1 AA1 5 GLU A 49 LEU A 50 0 SHEET 2 AA1 5 GLY A 54 SER A 60 -1 O GLU A 56 N GLU A 49 SHEET 3 AA1 5 ARG A 160 PRO A 166 -1 O VAL A 165 N LEU A 55 SHEET 4 AA1 5 VAL A 95 HIS A 100 -1 N ARG A 96 O ILE A 164 SHEET 5 AA1 5 ILE A 135 GLY A 139 1 O ARG A 138 N GLY A 99 SHEET 1 AA2 5 GLU B 49 ARG B 51 0 SHEET 2 AA2 5 GLY B 54 SER B 60 -1 O GLU B 56 N GLU B 49 SHEET 3 AA2 5 ARG B 160 PRO B 166 -1 O ILE B 163 N PHE B 57 SHEET 4 AA2 5 VAL B 95 HIS B 100 -1 N ARG B 96 O ILE B 164 SHEET 5 AA2 5 ILE B 135 GLY B 141 1 O LEU B 140 N GLY B 99 SITE 1 AC1 6 PHE A 65 ASN A 68 ARG A 71 ASN A 73 SITE 2 AC1 6 PRO A 74 HOH B 302 SITE 1 AC2 3 ASN A 67 ARG B 116 HOH B 302 CRYST1 44.563 44.563 154.934 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006454 0.00000