HEADER SIGNALING PROTEIN 16-OCT-18 6IKJ TITLE CRYSTAL STRUCTURE OF YFIB(F48S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: YFIB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: YFIB, PA1119; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SIGNALLING SYSTEM; PEPTIDOGLYCAN BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LI,Q.ZHANG,M.BARTLAM REVDAT 2 22-NOV-23 6IKJ 1 REMARK REVDAT 1 13-MAR-19 6IKJ 0 JRNL AUTH S.LI,T.LI,X.TENG,X.LOU,Y.XU,Q.ZHANG,M.BARTLAM JRNL TITL STRUCTURAL ANALYSIS OF ACTIVATING MUTANTS OF YFIB FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA PAO1. JRNL REF BIOCHEM. BIOPHYS. RES. V. 506 997 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 30404734 JRNL DOI 10.1016/J.BBRC.2018.10.190 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9636 - 4.2406 0.99 2146 155 0.1736 0.1983 REMARK 3 2 4.2406 - 3.3667 0.99 2034 146 0.1639 0.2051 REMARK 3 3 3.3667 - 2.9413 0.99 2023 147 0.1959 0.2159 REMARK 3 4 2.9413 - 2.6725 1.00 1991 143 0.1998 0.2349 REMARK 3 5 2.6725 - 2.4810 1.00 1999 146 0.1965 0.2569 REMARK 3 6 2.4810 - 2.3348 0.99 1964 141 0.1893 0.2033 REMARK 3 7 2.3348 - 2.2179 0.99 1992 144 0.2160 0.2688 REMARK 3 8 2.2179 - 2.1213 1.00 1967 143 0.1949 0.2424 REMARK 3 9 2.1213 - 2.0397 1.00 1956 141 0.2027 0.2716 REMARK 3 10 2.0397 - 1.9693 0.99 1957 142 0.2244 0.2645 REMARK 3 11 1.9693 - 1.9077 0.98 1929 140 0.2784 0.3537 REMARK 3 12 1.9077 - 1.8532 0.98 1930 138 0.2549 0.3642 REMARK 3 13 1.8532 - 1.8044 0.97 1911 139 0.2585 0.3008 REMARK 3 14 1.8044 - 1.7604 0.94 1805 129 0.2636 0.3322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2098 REMARK 3 ANGLE : 0.992 2821 REMARK 3 CHIRALITY : 0.058 309 REMARK 3 PLANARITY : 0.007 382 REMARK 3 DIHEDRAL : 16.957 1296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4212 -64.8737 151.6722 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2404 REMARK 3 T33: 0.3332 T12: -0.0789 REMARK 3 T13: -0.0043 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.6613 L22: 2.4333 REMARK 3 L33: 9.6384 L12: 0.3793 REMARK 3 L13: 0.9292 L23: -1.4840 REMARK 3 S TENSOR REMARK 3 S11: 0.3124 S12: -0.3871 S13: -0.3653 REMARK 3 S21: 0.1138 S22: -0.1923 S23: 0.1543 REMARK 3 S31: 0.3748 S32: -0.2804 S33: -0.1646 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4881 -52.8389 158.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.2377 REMARK 3 T33: 0.2792 T12: -0.0237 REMARK 3 T13: -0.0708 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.8537 L22: 7.3223 REMARK 3 L33: 1.0179 L12: 5.4994 REMARK 3 L13: -0.0419 L23: -0.2189 REMARK 3 S TENSOR REMARK 3 S11: 0.1974 S12: 0.3286 S13: -0.4573 REMARK 3 S21: 0.2595 S22: -0.0072 S23: -0.2890 REMARK 3 S31: 0.1825 S32: 0.1628 S33: -0.2984 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8996 -53.6460 146.4668 REMARK 3 T TENSOR REMARK 3 T11: 0.2935 T22: 0.2844 REMARK 3 T33: 0.2289 T12: -0.0161 REMARK 3 T13: -0.0185 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.7972 L22: 6.6720 REMARK 3 L33: 3.1995 L12: 5.1314 REMARK 3 L13: 1.5926 L23: 2.0858 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: 0.6417 S13: -0.2755 REMARK 3 S21: -0.1801 S22: 0.1927 S23: -0.1336 REMARK 3 S31: -0.1999 S32: 0.5049 S33: -0.1680 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4022 -52.9201 162.0905 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.1885 REMARK 3 T33: 0.2078 T12: -0.0265 REMARK 3 T13: 0.0715 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 4.0023 L22: 8.1328 REMARK 3 L33: 4.1588 L12: 3.2124 REMARK 3 L13: 0.5381 L23: 5.2180 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: -0.3795 S13: 0.0741 REMARK 3 S21: 0.3971 S22: -0.1899 S23: 0.1077 REMARK 3 S31: 0.0199 S32: 0.0156 S33: -0.0225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1188 -46.2718 158.4231 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.2205 REMARK 3 T33: 0.2454 T12: -0.0160 REMARK 3 T13: 0.0185 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 3.1074 L22: 4.5645 REMARK 3 L33: 4.4463 L12: -0.0224 REMARK 3 L13: 2.1795 L23: 1.0539 REMARK 3 S TENSOR REMARK 3 S11: 0.1118 S12: -0.1964 S13: 0.0173 REMARK 3 S21: 0.1547 S22: -0.0483 S23: 0.1976 REMARK 3 S31: -0.5210 S32: -0.2524 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4502 -58.9033 171.7851 REMARK 3 T TENSOR REMARK 3 T11: 0.6589 T22: 0.2681 REMARK 3 T33: 0.4977 T12: -0.0103 REMARK 3 T13: -0.1144 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 8.5251 L22: 3.4425 REMARK 3 L33: 8.6826 L12: -3.7778 REMARK 3 L13: 2.1178 L23: -1.3051 REMARK 3 S TENSOR REMARK 3 S11: -0.3879 S12: -0.2817 S13: -0.5681 REMARK 3 S21: 1.3571 S22: 0.3849 S23: -0.7679 REMARK 3 S31: 1.1693 S32: 0.0489 S33: -0.1310 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4412 -57.1768 159.0293 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.2806 REMARK 3 T33: 0.3290 T12: -0.0678 REMARK 3 T13: -0.0300 T23: 0.0948 REMARK 3 L TENSOR REMARK 3 L11: 5.9563 L22: 2.9936 REMARK 3 L33: 5.1962 L12: 4.2962 REMARK 3 L13: 5.6857 L23: 4.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.4609 S12: -0.3773 S13: -0.3698 REMARK 3 S21: 0.2677 S22: -0.0997 S23: -0.0239 REMARK 3 S31: 0.0415 S32: -0.1616 S33: -0.1984 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3696 -65.9821 134.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.2885 REMARK 3 T33: 0.4334 T12: 0.0451 REMARK 3 T13: -0.0125 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.4566 L22: 2.2717 REMARK 3 L33: 2.4265 L12: -1.7708 REMARK 3 L13: 1.7404 L23: -0.2041 REMARK 3 S TENSOR REMARK 3 S11: -0.2495 S12: -0.5320 S13: 0.0067 REMARK 3 S21: 0.2696 S22: 0.1204 S23: 0.5199 REMARK 3 S31: 0.0558 S32: -0.1702 S33: 0.1045 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2847 -57.0631 122.3360 REMARK 3 T TENSOR REMARK 3 T11: 0.3654 T22: 0.2279 REMARK 3 T33: 0.2542 T12: 0.0499 REMARK 3 T13: -0.0058 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.8134 L22: 8.2841 REMARK 3 L33: 3.4481 L12: -5.3713 REMARK 3 L13: 3.9729 L23: -3.9197 REMARK 3 S TENSOR REMARK 3 S11: 0.4705 S12: 0.1431 S13: -0.3242 REMARK 3 S21: -0.4882 S22: -0.2056 S23: 0.0639 REMARK 3 S31: 0.5095 S32: 0.0352 S33: -0.3424 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3237 -53.8948 134.3197 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.3074 REMARK 3 T33: 0.2676 T12: 0.0095 REMARK 3 T13: -0.0213 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 5.6577 L22: 4.5522 REMARK 3 L33: 4.0600 L12: -4.6897 REMARK 3 L13: 4.7823 L23: -4.1242 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.1753 S13: -0.2892 REMARK 3 S21: 0.4070 S22: 0.0410 S23: -0.0215 REMARK 3 S31: 0.1215 S32: -0.1142 S33: -0.0882 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9083 -55.1983 125.9141 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.2515 REMARK 3 T33: 0.3510 T12: 0.0677 REMARK 3 T13: -0.0253 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 9.3804 L22: 4.7662 REMARK 3 L33: 4.6471 L12: -3.0798 REMARK 3 L13: 5.2388 L23: -4.3655 REMARK 3 S TENSOR REMARK 3 S11: 0.2802 S12: 0.5973 S13: 0.2920 REMARK 3 S21: -0.3467 S22: -0.5172 S23: -0.3349 REMARK 3 S31: 0.4351 S32: 0.7809 S33: 0.2827 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0963 -48.5675 116.8927 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.3189 REMARK 3 T33: 0.2865 T12: 0.1033 REMARK 3 T13: 0.0639 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.6079 L22: 5.2510 REMARK 3 L33: 3.7839 L12: 0.6656 REMARK 3 L13: 4.2666 L23: 0.2432 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: 0.6495 S13: 0.2459 REMARK 3 S21: -0.6935 S22: -0.0633 S23: -0.1408 REMARK 3 S31: -0.0999 S32: 0.4925 S33: 0.0981 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5123 -49.1494 126.4333 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.2964 REMARK 3 T33: 0.3859 T12: 0.0200 REMARK 3 T13: 0.0359 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 8.4582 L22: 7.8085 REMARK 3 L33: 7.9525 L12: 1.3555 REMARK 3 L13: 7.9610 L23: 1.2075 REMARK 3 S TENSOR REMARK 3 S11: 0.1607 S12: 0.6455 S13: 0.7082 REMARK 3 S21: -0.2473 S22: -0.5856 S23: -0.9631 REMARK 3 S31: 0.0438 S32: 1.4048 S33: 0.2144 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4671 -61.1914 109.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.6649 T22: 0.3468 REMARK 3 T33: 0.3835 T12: 0.1425 REMARK 3 T13: -0.0908 T23: -0.0892 REMARK 3 L TENSOR REMARK 3 L11: 5.8748 L22: 5.4086 REMARK 3 L33: 6.2830 L12: 5.5349 REMARK 3 L13: 2.6017 L23: 1.4516 REMARK 3 S TENSOR REMARK 3 S11: 0.5194 S12: 1.0353 S13: -0.5279 REMARK 3 S21: -0.5699 S22: 0.2704 S23: -0.1709 REMARK 3 S31: 0.7664 S32: 0.1277 S33: -0.6629 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2443 -58.4252 121.7372 REMARK 3 T TENSOR REMARK 3 T11: 0.4630 T22: 0.3599 REMARK 3 T33: 0.2996 T12: 0.1097 REMARK 3 T13: -0.0463 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 9.7604 L22: 8.0345 REMARK 3 L33: 3.5517 L12: -5.2426 REMARK 3 L13: 5.5822 L23: -3.5963 REMARK 3 S TENSOR REMARK 3 S11: 0.4252 S12: 0.6264 S13: -0.5068 REMARK 3 S21: 0.1967 S22: 0.0954 S23: 0.1420 REMARK 3 S31: -0.3295 S32: 0.3278 S33: -0.4305 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29728 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 37.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZHW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M (NH4)2SO4, 0.1M CAPS PH 10.5, 0.2 REMARK 280 M LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.60300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.94800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.94800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.60300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 HIS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 PHE A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 CYS A 26 REMARK 465 GLN A 27 REMARK 465 THR A 28 REMARK 465 LYS A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 32 REMARK 465 THR A 33 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 6 REMARK 465 HIS B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 ARG B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 PHE B 17 REMARK 465 SER B 18 REMARK 465 LEU B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 ALA B 24 REMARK 465 GLY B 25 REMARK 465 CYS B 26 REMARK 465 GLN B 27 REMARK 465 THR B 28 REMARK 465 LYS B 29 REMARK 465 PRO B 30 REMARK 465 PRO B 31 REMARK 465 GLN B 32 REMARK 465 THR B 33 REMARK 465 GLU B 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 73 O HOH A 301 1.50 REMARK 500 O HOH A 362 O HOH A 390 1.93 REMARK 500 O HOH A 348 O HOH A 383 1.94 REMARK 500 O HOH B 251 O HOH B 262 1.95 REMARK 500 OE1 GLU B 45 O HOH B 201 1.96 REMARK 500 OD1 ASN B 73 O HOH B 202 2.06 REMARK 500 ND2 ASN A 73 O HOH A 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 69 -77.80 -91.59 REMARK 500 ASP A 102 -166.89 -79.99 REMARK 500 ASN A 149 7.88 -68.64 REMARK 500 LEU B 69 -78.63 -88.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 DBREF 6IKJ A 1 168 UNP Q9I4L6 Q9I4L6_PSEAE 1 168 DBREF 6IKJ B 1 168 UNP Q9I4L6 Q9I4L6_PSEAE 1 168 SEQADV 6IKJ SER A 48 UNP Q9I4L6 PHE 48 ENGINEERED MUTATION SEQADV 6IKJ SER B 48 UNP Q9I4L6 PHE 48 ENGINEERED MUTATION SEQRES 1 A 168 MET LEU PRO GLN ARG LEU HIS PRO SER ARG LEU LEU ALA SEQRES 2 A 168 LEU ALA LEU PHE SER LEU VAL LEU GLY LEU ALA GLY CYS SEQRES 3 A 168 GLN THR LYS PRO PRO GLN THR GLY LEU SER ALA GLU GLN SEQRES 4 A 168 ILE ALA VAL LEU GLN GLU GLN GLY SER GLU LEU ARG ASP SEQRES 5 A 168 GLU GLY TRP GLU PHE GLY MET SER SER LYS VAL LEU PHE SEQRES 6 A 168 GLY ASN ASN LEU ASP ARG LEU ASN PRO ASP SER ARG ASN SEQRES 7 A 168 THR LEU THR LYS ILE ALA ARG ALA LEU LEU ALA VAL ASP SEQRES 8 A 168 ILE ASP LYS VAL ARG LEU GLU GLY HIS THR ASP ASN TYR SEQRES 9 A 168 GLY ASP GLU GLY TYR ASN GLN LYS LEU SER GLU ARG ARG SEQRES 10 A 168 ALA GLU SER VAL ALA ALA VAL PHE ARG GLU ALA GLY MET SEQRES 11 A 168 PRO ALA ALA ASN ILE GLU VAL ARG GLY LEU GLY MET SER SEQRES 12 A 168 LYS PRO VAL ALA ASP ASN LYS THR ARG ALA GLY ARG SER SEQRES 13 A 168 GLU ASN ARG ARG VAL ALA ILE ILE VAL PRO ALA GLU SEQRES 1 B 168 MET LEU PRO GLN ARG LEU HIS PRO SER ARG LEU LEU ALA SEQRES 2 B 168 LEU ALA LEU PHE SER LEU VAL LEU GLY LEU ALA GLY CYS SEQRES 3 B 168 GLN THR LYS PRO PRO GLN THR GLY LEU SER ALA GLU GLN SEQRES 4 B 168 ILE ALA VAL LEU GLN GLU GLN GLY SER GLU LEU ARG ASP SEQRES 5 B 168 GLU GLY TRP GLU PHE GLY MET SER SER LYS VAL LEU PHE SEQRES 6 B 168 GLY ASN ASN LEU ASP ARG LEU ASN PRO ASP SER ARG ASN SEQRES 7 B 168 THR LEU THR LYS ILE ALA ARG ALA LEU LEU ALA VAL ASP SEQRES 8 B 168 ILE ASP LYS VAL ARG LEU GLU GLY HIS THR ASP ASN TYR SEQRES 9 B 168 GLY ASP GLU GLY TYR ASN GLN LYS LEU SER GLU ARG ARG SEQRES 10 B 168 ALA GLU SER VAL ALA ALA VAL PHE ARG GLU ALA GLY MET SEQRES 11 B 168 PRO ALA ALA ASN ILE GLU VAL ARG GLY LEU GLY MET SER SEQRES 12 B 168 LYS PRO VAL ALA ASP ASN LYS THR ARG ALA GLY ARG SER SEQRES 13 B 168 GLU ASN ARG ARG VAL ALA ILE ILE VAL PRO ALA GLU HET SO4 A 201 5 HET GOL A 202 14 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *188(H2 O) HELIX 1 AA1 SER A 36 GLY A 47 1 12 HELIX 2 AA2 SER A 61 GLY A 66 1 6 HELIX 3 AA3 ASN A 73 ALA A 89 1 17 HELIX 4 AA4 ASP A 106 GLY A 129 1 24 HELIX 5 AA5 PRO A 131 ALA A 133 5 3 HELIX 6 AA6 THR A 151 ARG A 159 1 9 HELIX 7 AA7 SER B 36 GLN B 46 1 11 HELIX 8 AA8 SER B 61 GLY B 66 1 6 HELIX 9 AA9 ASN B 73 ALA B 89 1 17 HELIX 10 AB1 ASP B 106 GLY B 129 1 24 HELIX 11 AB2 PRO B 131 ALA B 133 5 3 HELIX 12 AB3 THR B 151 ARG B 159 1 9 SHEET 1 AA1 5 GLU A 49 ARG A 51 0 SHEET 2 AA1 5 GLY A 54 SER A 60 -1 O GLU A 56 N GLU A 49 SHEET 3 AA1 5 ARG A 160 VAL A 165 -1 O ILE A 163 N PHE A 57 SHEET 4 AA1 5 VAL A 95 HIS A 100 -1 N GLU A 98 O ALA A 162 SHEET 5 AA1 5 ILE A 135 GLY A 139 1 O GLU A 136 N LEU A 97 SHEET 1 AA2 5 GLU B 49 ARG B 51 0 SHEET 2 AA2 5 GLY B 54 SER B 60 -1 O GLU B 56 N GLU B 49 SHEET 3 AA2 5 ARG B 160 VAL B 165 -1 O ILE B 163 N PHE B 57 SHEET 4 AA2 5 VAL B 95 HIS B 100 -1 N GLU B 98 O ALA B 162 SHEET 5 AA2 5 ILE B 135 GLY B 139 1 O GLU B 136 N LEU B 97 SITE 1 AC1 7 ARG A 116 HOH A 314 HOH A 315 HOH A 331 SITE 2 AC1 7 HOH A 363 ASN B 67 ASN B 68 SITE 1 AC2 7 PRO A 131 ALA A 132 ALA A 133 HOH A 365 SITE 2 AC2 7 PRO B 131 ALA B 132 ALA B 133 CRYST1 37.206 56.300 139.896 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007148 0.00000