HEADER TRANSFERASE 19-OCT-18 6ILS TITLE STRUCTURE OF ARABIDOPSIS THALIANA RIBOKINASE COMPLEXED WITH RIBOSE AND TITLE 2 ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RK; COMPND 5 EC: 2.7.1.15; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: TO MAKE ATRBSK CRYSTAL, WE DELETED 1-67 RESIDUES OF COMPND 8 ATRBSK. THE REASON FOR TARGET PROTEIN TRUNCATION IS TO REMOVE THE COMPND 9 DISORDER. MISS MATCHED SEQUENCE MET67 IS EXPRESSION TAG. THE FULL- COMPND 10 LENGTH ATRBSK SEQUENCE IS AS FOLLOWS : >RIBOKINASE.AT COMPND 11 MMKGISSVSQSINYNPYIEFNRPQLQISTVNPNPAQSRFSRPRSLRVLSLSADPSANRNPKSAVDAHAP COMPND 12 PLVVVGSANADIYVEIERLPKEGETISAKTGQTLAGGKGANQAACGAKLMYPTYFVGRLGEDAHGKLIA COMPND 13 EALGDDGCGVHLDYVRSVNNEPTGHAVVMLQSDGQNSIIIVGGANMKAWPEIMSDDDLEIVRNAGIVLL COMPND 14 QREIPDSINIQVAKAVKKAGVPVILDVGGMDTPIPNELLDSIDILSPNETELSRLTGMPTETFEQISQA COMPND 15 VAKCHKLGVKQVLVKLGSKGSALFIQGEKPIQQSIIPAAQVVDTTGAGDTFTAAFAVAMVEGKSHEECL COMPND 16 RFAAAAASLCVQVKGAIPSMPDRKSVLKLLKFSI THEREFORE, N-TERMINAL RESIDUES 1- COMPND 17 67 WERE DELETED TO MAKE ATRBSK CRYSTAL. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G17160, F20D23.14, F20D23_14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RIBOSE, RIBOKINASE, ATRBSK, PFKB FAMILY, PHOSPHOTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KANG,J.OH,S.RHEE REVDAT 4 22-NOV-23 6ILS 1 HETSYN REVDAT 3 29-JUL-20 6ILS 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 24-APR-19 6ILS 1 JRNL REVDAT 1 13-MAR-19 6ILS 0 JRNL AUTH P.A.KANG,J.OH,H.LEE,C.P.WITTE,S.RHEE JRNL TITL CRYSTAL STRUCTURE AND MUTATIONAL ANALYSES OF RIBOKINASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA. JRNL REF J. STRUCT. BIOL. V. 206 110 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30822455 JRNL DOI 10.1016/J.JSB.2019.02.007 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 77479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8383 - 5.3916 0.97 2902 157 0.1946 0.2079 REMARK 3 2 5.3916 - 4.2828 1.00 2841 147 0.1680 0.1752 REMARK 3 3 4.2828 - 3.7424 1.00 2805 142 0.1724 0.2056 REMARK 3 4 3.7424 - 3.4006 1.00 2791 127 0.1905 0.2593 REMARK 3 5 3.4006 - 3.1571 1.00 2781 123 0.2071 0.2837 REMARK 3 6 3.1571 - 2.9711 1.00 2715 170 0.2226 0.2613 REMARK 3 7 2.9711 - 2.8224 1.00 2732 151 0.2212 0.2678 REMARK 3 8 2.8224 - 2.6996 1.00 2731 151 0.2210 0.2276 REMARK 3 9 2.6996 - 2.5957 1.00 2742 131 0.2334 0.3201 REMARK 3 10 2.5957 - 2.5062 1.00 2735 138 0.2332 0.2500 REMARK 3 11 2.5062 - 2.4279 1.00 2739 119 0.2269 0.2829 REMARK 3 12 2.4279 - 2.3585 1.00 2692 156 0.2265 0.2698 REMARK 3 13 2.3585 - 2.2964 1.00 2720 137 0.2328 0.2813 REMARK 3 14 2.2964 - 2.2404 1.00 2700 150 0.2376 0.2770 REMARK 3 15 2.2404 - 2.1895 1.00 2719 135 0.2389 0.2409 REMARK 3 16 2.1895 - 2.1429 1.00 2701 138 0.2312 0.2872 REMARK 3 17 2.1429 - 2.1001 1.00 2699 131 0.2396 0.2863 REMARK 3 18 2.1001 - 2.0604 1.00 2728 136 0.2471 0.2752 REMARK 3 19 2.0604 - 2.0236 1.00 2675 141 0.2423 0.2927 REMARK 3 20 2.0236 - 1.9893 1.00 2677 147 0.2632 0.2665 REMARK 3 21 1.9893 - 1.9573 1.00 2731 128 0.2678 0.2991 REMARK 3 22 1.9573 - 1.9271 1.00 2658 147 0.2723 0.3057 REMARK 3 23 1.9271 - 1.8988 1.00 2699 136 0.2848 0.3030 REMARK 3 24 1.8988 - 1.8721 1.00 2685 147 0.2931 0.3318 REMARK 3 25 1.8721 - 1.8468 1.00 2698 143 0.3069 0.3369 REMARK 3 26 1.8468 - 1.8228 1.00 2642 161 0.2997 0.3293 REMARK 3 27 1.8228 - 1.8000 1.00 2714 138 0.3226 0.3167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4672 REMARK 3 ANGLE : 1.096 6361 REMARK 3 CHIRALITY : 0.044 762 REMARK 3 PLANARITY : 0.005 821 REMARK 3 DIHEDRAL : 12.725 1679 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ILS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6ILR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE (PH 5.5) , 40% REMARK 280 (V/V) PEG 600, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.73000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.87000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.73000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.87000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.87000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.87000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 SER A 170 OG REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LEU B 88 CG CD1 CD2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 GLN B 173 CG CD OE1 NE2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 ILE B 379 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 91 88.75 -49.39 REMARK 500 ASP A 171 -14.91 -169.27 REMARK 500 ASP A 238 42.24 -102.49 REMARK 500 ASP A 319 113.59 -170.87 REMARK 500 ALA A 361 -87.25 -101.59 REMARK 500 ARG B 209 54.02 -116.94 REMARK 500 LYS B 225 33.24 -77.43 REMARK 500 ALA B 226 -10.56 -150.61 REMARK 500 THR B 267 36.37 -140.80 REMARK 500 ASP B 319 112.78 -167.31 REMARK 500 ALA B 361 -78.56 -80.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 689 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 717 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 718 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B 719 DISTANCE = 7.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 319 O REMARK 620 2 THR A 321 O 91.7 REMARK 620 3 CYS A 355 O 87.7 126.9 REMARK 620 4 VAL A 358 O 90.4 156.0 77.1 REMARK 620 5 GLY A 360 O 126.4 70.0 143.9 89.7 REMARK 620 6 SER A 364 OG 164.3 88.9 79.5 95.4 68.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 319 O REMARK 620 2 THR B 321 O 94.6 REMARK 620 3 CYS B 355 O 87.3 127.7 REMARK 620 4 VAL B 358 O 89.6 156.1 76.0 REMARK 620 5 GLY B 360 O 141.2 78.5 127.2 83.5 REMARK 620 6 SER B 364 OG 161.7 90.3 75.8 93.0 57.1 REMARK 620 N 1 2 3 4 5 DBREF 6ILS A 68 379 UNP A1A6H3 A1A6H3_ARATH 68 379 DBREF 6ILS B 68 379 UNP A1A6H3 A1A6H3_ARATH 68 379 SEQADV 6ILS MET A 67 UNP A1A6H3 INITIATING METHIONINE SEQADV 6ILS MET B 67 UNP A1A6H3 INITIATING METHIONINE SEQRES 1 A 313 MET ALA PRO PRO LEU VAL VAL VAL GLY SER ALA ASN ALA SEQRES 2 A 313 ASP ILE TYR VAL GLU ILE GLU ARG LEU PRO LYS GLU GLY SEQRES 3 A 313 GLU THR ILE SER ALA LYS THR GLY GLN THR LEU ALA GLY SEQRES 4 A 313 GLY LYS GLY ALA ASN GLN ALA ALA CYS GLY ALA LYS LEU SEQRES 5 A 313 MET TYR PRO THR TYR PHE VAL GLY ARG LEU GLY GLU ASP SEQRES 6 A 313 ALA HIS GLY LYS LEU ILE ALA GLU ALA LEU GLY ASP ASP SEQRES 7 A 313 GLY CYS GLY VAL HIS LEU ASP TYR VAL ARG SER VAL ASN SEQRES 8 A 313 ASN GLU PRO THR GLY HIS ALA VAL VAL MET LEU GLN SER SEQRES 9 A 313 ASP GLY GLN ASN SER ILE ILE ILE VAL GLY GLY ALA ASN SEQRES 10 A 313 MET LYS ALA TRP PRO GLU ILE MET SER ASP ASP ASP LEU SEQRES 11 A 313 GLU ILE VAL ARG ASN ALA GLY ILE VAL LEU LEU GLN ARG SEQRES 12 A 313 GLU ILE PRO ASP SER ILE ASN ILE GLN VAL ALA LYS ALA SEQRES 13 A 313 VAL LYS LYS ALA GLY VAL PRO VAL ILE LEU ASP VAL GLY SEQRES 14 A 313 GLY MET ASP THR PRO ILE PRO ASN GLU LEU LEU ASP SER SEQRES 15 A 313 ILE ASP ILE LEU SER PRO ASN GLU THR GLU LEU SER ARG SEQRES 16 A 313 LEU THR GLY MET PRO THR GLU THR PHE GLU GLN ILE SER SEQRES 17 A 313 GLN ALA VAL ALA LYS CYS HIS LYS LEU GLY VAL LYS GLN SEQRES 18 A 313 VAL LEU VAL LYS LEU GLY SER LYS GLY SER ALA LEU PHE SEQRES 19 A 313 ILE GLN GLY GLU LYS PRO ILE GLN GLN SER ILE ILE PRO SEQRES 20 A 313 ALA ALA GLN VAL VAL ASP THR THR GLY ALA GLY ASP THR SEQRES 21 A 313 PHE THR ALA ALA PHE ALA VAL ALA MET VAL GLU GLY LYS SEQRES 22 A 313 SER HIS GLU GLU CYS LEU ARG PHE ALA ALA ALA ALA ALA SEQRES 23 A 313 SER LEU CYS VAL GLN VAL LYS GLY ALA ILE PRO SER MET SEQRES 24 A 313 PRO ASP ARG LYS SER VAL LEU LYS LEU LEU LYS PHE SER SEQRES 25 A 313 ILE SEQRES 1 B 313 MET ALA PRO PRO LEU VAL VAL VAL GLY SER ALA ASN ALA SEQRES 2 B 313 ASP ILE TYR VAL GLU ILE GLU ARG LEU PRO LYS GLU GLY SEQRES 3 B 313 GLU THR ILE SER ALA LYS THR GLY GLN THR LEU ALA GLY SEQRES 4 B 313 GLY LYS GLY ALA ASN GLN ALA ALA CYS GLY ALA LYS LEU SEQRES 5 B 313 MET TYR PRO THR TYR PHE VAL GLY ARG LEU GLY GLU ASP SEQRES 6 B 313 ALA HIS GLY LYS LEU ILE ALA GLU ALA LEU GLY ASP ASP SEQRES 7 B 313 GLY CYS GLY VAL HIS LEU ASP TYR VAL ARG SER VAL ASN SEQRES 8 B 313 ASN GLU PRO THR GLY HIS ALA VAL VAL MET LEU GLN SER SEQRES 9 B 313 ASP GLY GLN ASN SER ILE ILE ILE VAL GLY GLY ALA ASN SEQRES 10 B 313 MET LYS ALA TRP PRO GLU ILE MET SER ASP ASP ASP LEU SEQRES 11 B 313 GLU ILE VAL ARG ASN ALA GLY ILE VAL LEU LEU GLN ARG SEQRES 12 B 313 GLU ILE PRO ASP SER ILE ASN ILE GLN VAL ALA LYS ALA SEQRES 13 B 313 VAL LYS LYS ALA GLY VAL PRO VAL ILE LEU ASP VAL GLY SEQRES 14 B 313 GLY MET ASP THR PRO ILE PRO ASN GLU LEU LEU ASP SER SEQRES 15 B 313 ILE ASP ILE LEU SER PRO ASN GLU THR GLU LEU SER ARG SEQRES 16 B 313 LEU THR GLY MET PRO THR GLU THR PHE GLU GLN ILE SER SEQRES 17 B 313 GLN ALA VAL ALA LYS CYS HIS LYS LEU GLY VAL LYS GLN SEQRES 18 B 313 VAL LEU VAL LYS LEU GLY SER LYS GLY SER ALA LEU PHE SEQRES 19 B 313 ILE GLN GLY GLU LYS PRO ILE GLN GLN SER ILE ILE PRO SEQRES 20 B 313 ALA ALA GLN VAL VAL ASP THR THR GLY ALA GLY ASP THR SEQRES 21 B 313 PHE THR ALA ALA PHE ALA VAL ALA MET VAL GLU GLY LYS SEQRES 22 B 313 SER HIS GLU GLU CYS LEU ARG PHE ALA ALA ALA ALA ALA SEQRES 23 B 313 SER LEU CYS VAL GLN VAL LYS GLY ALA ILE PRO SER MET SEQRES 24 B 313 PRO ASP ARG LYS SER VAL LEU LYS LEU LEU LYS PHE SER SEQRES 25 B 313 ILE HET ATP A 401 31 HET NA A 402 1 HET ATP B 401 31 HET RIB B 402 10 HET NA B 403 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION HETNAM RIB ALPHA-D-RIBOFURANOSE HETSYN RIB ALPHA-D-RIBOSE; D-RIBOSE; RIBOSE FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 NA 2(NA 1+) FORMUL 6 RIB C5 H10 O5 FORMUL 8 HOH *408(H2 O) HELIX 1 AA1 GLY A 106 LEU A 118 1 13 HELIX 2 AA2 ASP A 131 GLY A 142 1 12 HELIX 3 AA3 GLY A 181 ALA A 186 1 6 HELIX 4 AA4 SER A 192 ASN A 201 1 10 HELIX 5 AA5 PRO A 212 GLY A 227 1 16 HELIX 6 AA6 PRO A 242 ASP A 247 1 6 HELIX 7 AA7 ASN A 255 GLY A 264 1 10 HELIX 8 AA8 THR A 269 GLY A 284 1 16 HELIX 9 AA9 GLY A 293 LYS A 295 5 3 HELIX 10 AB1 GLY A 322 GLU A 337 1 16 HELIX 11 AB2 SER A 340 GLN A 357 1 18 HELIX 12 AB3 ALA A 361 MET A 365 5 5 HELIX 13 AB4 ASP A 367 PHE A 377 1 11 HELIX 14 AB5 GLY B 106 LEU B 118 1 13 HELIX 15 AB6 ASP B 131 GLY B 142 1 12 HELIX 16 AB7 GLY B 181 ALA B 186 1 6 HELIX 17 AB8 LEU B 196 ASN B 201 1 6 HELIX 18 AB9 PRO B 212 LYS B 225 1 14 HELIX 19 AC1 PRO B 242 ASP B 247 1 6 HELIX 20 AC2 ASN B 255 GLY B 264 1 10 HELIX 21 AC3 THR B 269 LEU B 283 1 15 HELIX 22 AC4 GLY B 293 LYS B 295 5 3 HELIX 23 AC5 GLY B 322 GLU B 337 1 16 HELIX 24 AC6 SER B 340 VAL B 356 1 17 HELIX 25 AC7 ALA B 361 MET B 365 5 5 HELIX 26 AC8 ASP B 367 ILE B 379 1 13 SHEET 1 AA1 8 THR A 122 VAL A 125 0 SHEET 2 AA1 8 LEU A 71 VAL A 74 1 N VAL A 73 O VAL A 125 SHEET 3 AA1 8 ILE A 204 ARG A 209 1 O ILE A 204 N VAL A 72 SHEET 4 AA1 8 VAL A 230 GLY A 236 1 O ILE A 231 N LEU A 207 SHEET 5 AA1 8 ILE A 251 SER A 253 1 O ILE A 251 N LEU A 232 SHEET 6 AA1 8 GLN A 287 LYS A 291 1 O LEU A 289 N LEU A 252 SHEET 7 AA1 8 SER A 297 ILE A 301 -1 O PHE A 300 N VAL A 288 SHEET 8 AA1 8 ILE A 307 GLN A 309 -1 O GLN A 309 N SER A 297 SHEET 1 AA2 5 THR A 99 GLY A 105 0 SHEET 2 AA2 5 ASN A 78 ILE A 85 -1 N ASP A 80 O LEU A 103 SHEET 3 AA2 5 GLY A 162 GLN A 169 1 O ALA A 164 N ILE A 81 SHEET 4 AA2 5 ASN A 174 VAL A 179 -1 O VAL A 179 N HIS A 163 SHEET 5 AA2 5 THR B 94 SER B 96 1 O ILE B 95 N ILE A 176 SHEET 1 AA3 5 THR A 94 SER A 96 0 SHEET 2 AA3 5 ASN B 174 VAL B 179 1 O ILE B 176 N ILE A 95 SHEET 3 AA3 5 GLY B 162 LEU B 168 -1 N HIS B 163 O VAL B 179 SHEET 4 AA3 5 ASN B 78 GLU B 84 1 N ILE B 81 O ALA B 164 SHEET 5 AA3 5 THR B 99 GLY B 105 -1 O LEU B 103 N ASP B 80 SHEET 1 AA4 2 ARG A 127 GLY A 129 0 SHEET 2 AA4 2 ARG A 154 VAL A 156 1 O ARG A 154 N LEU A 128 SHEET 1 AA5 9 VAL B 153 VAL B 156 0 SHEET 2 AA5 9 THR B 122 GLY B 129 1 N LEU B 128 O ARG B 154 SHEET 3 AA5 9 LEU B 71 VAL B 74 1 N VAL B 73 O VAL B 125 SHEET 4 AA5 9 ILE B 204 ARG B 209 1 O ILE B 204 N VAL B 72 SHEET 5 AA5 9 VAL B 230 GLY B 236 1 O ASP B 233 N LEU B 207 SHEET 6 AA5 9 ILE B 251 SER B 253 1 O SER B 253 N LEU B 232 SHEET 7 AA5 9 GLN B 287 LYS B 291 1 O LEU B 289 N LEU B 252 SHEET 8 AA5 9 SER B 297 ILE B 301 -1 O PHE B 300 N VAL B 288 SHEET 9 AA5 9 ILE B 307 GLN B 309 -1 O GLN B 309 N SER B 297 LINK O ASP A 319 NA NA A 402 1555 1555 2.74 LINK O THR A 321 NA NA A 402 1555 1555 3.05 LINK O CYS A 355 NA NA A 402 1555 1555 2.59 LINK O VAL A 358 NA NA A 402 1555 1555 2.70 LINK O GLY A 360 NA NA A 402 1555 1555 2.63 LINK OG SER A 364 NA NA A 402 1555 1555 2.89 LINK O ASP B 319 NA NA B 403 1555 1555 2.63 LINK O THR B 321 NA NA B 403 1555 1555 3.00 LINK O CYS B 355 NA NA B 403 1555 1555 2.67 LINK O VAL B 358 NA NA B 403 1555 1555 2.73 LINK O GLY B 360 NA NA B 403 1555 1555 2.92 LINK OG SER B 364 NA NA B 403 1555 1555 3.04 CRYST1 99.460 99.460 165.740 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006034 0.00000