HEADER TRANSFERASE 19-OCT-18 6ILT TITLE STRUCTURE OF ARABIDOPSIS THALIANA RIBOKINASE COMPLEXED WITH ATP AND TITLE 2 MAGNESIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RK; COMPND 5 EC: 2.7.1.15; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: TO MAKE ATRBSK CRYSTAL, WE DELETED 1-67 RESIDUES OF COMPND 8 ATRBSK. THE REASON FOR TARGET PROTEIN TRUNCATION IS TO REMOVE THE COMPND 9 DISORDER. MISS MATCHED SEQUENCE MET67 IS EXPRESSION TAG. THE FULL- COMPND 10 LENGTH ATRBSK SEQUENCE IS AS FOLLOWS : >RIBOKINASE.AT COMPND 11 MMKGISSVSQSINYNPYIEFNRPQLQISTVNPNPAQSRFSRPRSLRVLSLSADPSANRNPKSAVDAHAP COMPND 12 PLVVVGSANADIYVEIERLPKEGETISAKTGQTLAGGKGANQAACGAKLMYPTYFVGRLGEDAHGKLIA COMPND 13 EALGDDGCGVHLDYVRSVNNEPTGHAVVMLQSDGQNSIIIVGGANMKAWPEIMSDDDLEIVRNAGIVLL COMPND 14 QREIPDSINIQVAKAVKKAGVPVILDVGGMDTPIPNELLDSIDILSPNETELSRLTGMPTETFEQISQA COMPND 15 VAKCHKLGVKQVLVKLGSKGSALFIQGEKPIQQSIIPAAQVVDTTGAGDTFTAAFAVAMVEGKSHEECL COMPND 16 RFAAAAASLCVQVKGAIPSMPDRKSVLKLLKFSI THEREFORE, N-TERMINAL RESIDUES 1- COMPND 17 67 WERE DELETED TO MAKE ATRBSK CRYSTAL. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G17160, F20D23.14, F20D23_14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RIBOSE, RIBOKINASE, ATRBSK, PFKB FAMILY, PHOSPHOTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KANG,J.OH,S.RHEE REVDAT 3 22-NOV-23 6ILT 1 LINK REVDAT 2 24-APR-19 6ILT 1 JRNL REVDAT 1 13-MAR-19 6ILT 0 JRNL AUTH P.A.KANG,J.OH,H.LEE,C.P.WITTE,S.RHEE JRNL TITL CRYSTAL STRUCTURE AND MUTATIONAL ANALYSES OF RIBOKINASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA. JRNL REF J. STRUCT. BIOL. V. 206 110 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30822455 JRNL DOI 10.1016/J.JSB.2019.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 39951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3465 - 5.2604 0.97 3123 163 0.1961 0.2063 REMARK 3 2 5.2604 - 4.1781 0.94 2864 149 0.1747 0.2181 REMARK 3 3 4.1781 - 3.6508 0.92 2743 145 0.1968 0.2625 REMARK 3 4 3.6508 - 3.3174 0.91 2694 135 0.2212 0.2493 REMARK 3 5 3.3174 - 3.0798 0.92 2749 142 0.2573 0.2923 REMARK 3 6 3.0798 - 2.8984 0.92 2704 140 0.2782 0.3445 REMARK 3 7 2.8984 - 2.7533 0.92 2700 141 0.2778 0.3511 REMARK 3 8 2.7533 - 2.6335 0.92 2710 141 0.2705 0.3355 REMARK 3 9 2.6335 - 2.5321 0.92 2680 139 0.2889 0.3321 REMARK 3 10 2.5321 - 2.4448 0.92 2676 139 0.2711 0.3246 REMARK 3 11 2.4448 - 2.3684 0.91 2630 137 0.2776 0.3513 REMARK 3 12 2.3684 - 2.3007 0.91 2645 138 0.2929 0.4171 REMARK 3 13 2.3007 - 2.2401 0.90 2631 137 0.3123 0.3765 REMARK 3 14 2.2401 - 2.1855 0.84 2430 126 0.3149 0.3525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4539 REMARK 3 ANGLE : 1.250 6204 REMARK 3 CHIRALITY : 0.046 759 REMARK 3 PLANARITY : 0.005 800 REMARK 3 DIHEDRAL : 15.804 1596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ILT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6ILR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE (PH 5.5), 40% REMARK 280 (V/V) PEG 600, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.72250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.47600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.72250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.47600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.72250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.72250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.47600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.72250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.72250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.47600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLN A 169 CG CD OE1 NE2 REMARK 470 SER A 170 OG REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 ASN A 174 CG OD1 ND2 REMARK 470 ASP A 193 CG OD1 OD2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 GLN A 302 CG CD OE1 NE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 SER B 170 OG REMARK 470 GLN B 173 CG CD OE1 NE2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 ASP B 194 CG OD1 OD2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 ASP B 238 CG OD1 OD2 REMARK 470 ARG B 261 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 LYS B 295 CG CD CE NZ REMARK 470 LYS B 339 CG CD CE NZ REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 ILE B 379 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 267 59.55 -147.92 REMARK 500 GLN A 302 47.20 -79.58 REMARK 500 GLU A 304 -161.51 -168.48 REMARK 500 ALA A 361 -68.41 -91.78 REMARK 500 ASP B 151 -35.52 -37.49 REMARK 500 ARG B 209 55.10 -118.09 REMARK 500 ASP B 238 31.99 -97.44 REMARK 500 THR B 267 32.11 -141.83 REMARK 500 ASP B 319 108.25 -160.43 REMARK 500 ALA B 361 -75.21 -89.78 REMARK 500 SER B 378 48.14 -153.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 319 O REMARK 620 2 THR A 321 O 84.6 REMARK 620 3 CYS A 355 O 84.8 125.3 REMARK 620 4 VAL A 358 O 81.4 153.1 76.1 REMARK 620 5 GLY A 360 O 135.7 83.2 135.7 91.0 REMARK 620 6 SER A 364 OG 156.6 99.9 73.8 102.0 67.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O1B REMARK 620 2 ATP A 401 O1A 69.8 REMARK 620 3 HOH A 501 O 104.3 52.0 REMARK 620 4 HOH A 506 O 67.2 62.2 110.9 REMARK 620 5 HOH A 530 O 75.5 123.3 174.2 63.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O3G REMARK 620 2 ATP A 401 O2B 77.2 REMARK 620 3 HOH A 514 O 105.1 104.3 REMARK 620 4 HOH A 517 O 170.2 97.3 84.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 319 O REMARK 620 2 THR B 321 O 92.2 REMARK 620 3 CYS B 355 O 92.5 131.9 REMARK 620 4 VAL B 358 O 90.3 156.5 71.3 REMARK 620 5 GLY B 360 O 135.1 78.7 126.1 83.1 REMARK 620 6 SER B 364 OG 159.9 96.9 68.1 88.4 64.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 401 O2B REMARK 620 2 ATP B 401 O2A 71.7 REMARK 620 3 HOH B 501 O 86.0 70.2 REMARK 620 4 HOH B 542 O 85.2 151.0 126.6 REMARK 620 5 HOH B 546 O 138.9 106.0 133.1 79.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 401 O1G REMARK 620 2 ATP B 401 O1B 80.7 REMARK 620 3 HOH B 511 O 157.9 92.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 DBREF 6ILT A 68 379 UNP A1A6H3 A1A6H3_ARATH 68 379 DBREF 6ILT B 68 379 UNP A1A6H3 A1A6H3_ARATH 68 379 SEQADV 6ILT MET A 67 UNP A1A6H3 INITIATING METHIONINE SEQADV 6ILT MET B 67 UNP A1A6H3 INITIATING METHIONINE SEQRES 1 A 313 MET ALA PRO PRO LEU VAL VAL VAL GLY SER ALA ASN ALA SEQRES 2 A 313 ASP ILE TYR VAL GLU ILE GLU ARG LEU PRO LYS GLU GLY SEQRES 3 A 313 GLU THR ILE SER ALA LYS THR GLY GLN THR LEU ALA GLY SEQRES 4 A 313 GLY LYS GLY ALA ASN GLN ALA ALA CYS GLY ALA LYS LEU SEQRES 5 A 313 MET TYR PRO THR TYR PHE VAL GLY ARG LEU GLY GLU ASP SEQRES 6 A 313 ALA HIS GLY LYS LEU ILE ALA GLU ALA LEU GLY ASP ASP SEQRES 7 A 313 GLY CYS GLY VAL HIS LEU ASP TYR VAL ARG SER VAL ASN SEQRES 8 A 313 ASN GLU PRO THR GLY HIS ALA VAL VAL MET LEU GLN SER SEQRES 9 A 313 ASP GLY GLN ASN SER ILE ILE ILE VAL GLY GLY ALA ASN SEQRES 10 A 313 MET LYS ALA TRP PRO GLU ILE MET SER ASP ASP ASP LEU SEQRES 11 A 313 GLU ILE VAL ARG ASN ALA GLY ILE VAL LEU LEU GLN ARG SEQRES 12 A 313 GLU ILE PRO ASP SER ILE ASN ILE GLN VAL ALA LYS ALA SEQRES 13 A 313 VAL LYS LYS ALA GLY VAL PRO VAL ILE LEU ASP VAL GLY SEQRES 14 A 313 GLY MET ASP THR PRO ILE PRO ASN GLU LEU LEU ASP SER SEQRES 15 A 313 ILE ASP ILE LEU SER PRO ASN GLU THR GLU LEU SER ARG SEQRES 16 A 313 LEU THR GLY MET PRO THR GLU THR PHE GLU GLN ILE SER SEQRES 17 A 313 GLN ALA VAL ALA LYS CYS HIS LYS LEU GLY VAL LYS GLN SEQRES 18 A 313 VAL LEU VAL LYS LEU GLY SER LYS GLY SER ALA LEU PHE SEQRES 19 A 313 ILE GLN GLY GLU LYS PRO ILE GLN GLN SER ILE ILE PRO SEQRES 20 A 313 ALA ALA GLN VAL VAL ASP THR THR GLY ALA GLY ASP THR SEQRES 21 A 313 PHE THR ALA ALA PHE ALA VAL ALA MET VAL GLU GLY LYS SEQRES 22 A 313 SER HIS GLU GLU CYS LEU ARG PHE ALA ALA ALA ALA ALA SEQRES 23 A 313 SER LEU CYS VAL GLN VAL LYS GLY ALA ILE PRO SER MET SEQRES 24 A 313 PRO ASP ARG LYS SER VAL LEU LYS LEU LEU LYS PHE SER SEQRES 25 A 313 ILE SEQRES 1 B 313 MET ALA PRO PRO LEU VAL VAL VAL GLY SER ALA ASN ALA SEQRES 2 B 313 ASP ILE TYR VAL GLU ILE GLU ARG LEU PRO LYS GLU GLY SEQRES 3 B 313 GLU THR ILE SER ALA LYS THR GLY GLN THR LEU ALA GLY SEQRES 4 B 313 GLY LYS GLY ALA ASN GLN ALA ALA CYS GLY ALA LYS LEU SEQRES 5 B 313 MET TYR PRO THR TYR PHE VAL GLY ARG LEU GLY GLU ASP SEQRES 6 B 313 ALA HIS GLY LYS LEU ILE ALA GLU ALA LEU GLY ASP ASP SEQRES 7 B 313 GLY CYS GLY VAL HIS LEU ASP TYR VAL ARG SER VAL ASN SEQRES 8 B 313 ASN GLU PRO THR GLY HIS ALA VAL VAL MET LEU GLN SER SEQRES 9 B 313 ASP GLY GLN ASN SER ILE ILE ILE VAL GLY GLY ALA ASN SEQRES 10 B 313 MET LYS ALA TRP PRO GLU ILE MET SER ASP ASP ASP LEU SEQRES 11 B 313 GLU ILE VAL ARG ASN ALA GLY ILE VAL LEU LEU GLN ARG SEQRES 12 B 313 GLU ILE PRO ASP SER ILE ASN ILE GLN VAL ALA LYS ALA SEQRES 13 B 313 VAL LYS LYS ALA GLY VAL PRO VAL ILE LEU ASP VAL GLY SEQRES 14 B 313 GLY MET ASP THR PRO ILE PRO ASN GLU LEU LEU ASP SER SEQRES 15 B 313 ILE ASP ILE LEU SER PRO ASN GLU THR GLU LEU SER ARG SEQRES 16 B 313 LEU THR GLY MET PRO THR GLU THR PHE GLU GLN ILE SER SEQRES 17 B 313 GLN ALA VAL ALA LYS CYS HIS LYS LEU GLY VAL LYS GLN SEQRES 18 B 313 VAL LEU VAL LYS LEU GLY SER LYS GLY SER ALA LEU PHE SEQRES 19 B 313 ILE GLN GLY GLU LYS PRO ILE GLN GLN SER ILE ILE PRO SEQRES 20 B 313 ALA ALA GLN VAL VAL ASP THR THR GLY ALA GLY ASP THR SEQRES 21 B 313 PHE THR ALA ALA PHE ALA VAL ALA MET VAL GLU GLY LYS SEQRES 22 B 313 SER HIS GLU GLU CYS LEU ARG PHE ALA ALA ALA ALA ALA SEQRES 23 B 313 SER LEU CYS VAL GLN VAL LYS GLY ALA ILE PRO SER MET SEQRES 24 B 313 PRO ASP ARG LYS SER VAL LEU LYS LEU LEU LYS PHE SER SEQRES 25 B 313 ILE HET ATP A 401 31 HET MG A 402 1 HET MG A 403 1 HET NA A 404 1 HET ATP B 401 31 HET MG B 402 1 HET MG B 403 1 HET NA B 404 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 4(MG 2+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *91(H2 O) HELIX 1 AA1 GLY A 106 LEU A 118 1 13 HELIX 2 AA2 ASP A 131 GLY A 142 1 12 HELIX 3 AA3 GLY A 181 ALA A 186 1 6 HELIX 4 AA4 SER A 192 ASN A 201 1 10 HELIX 5 AA5 PRO A 212 GLY A 227 1 16 HELIX 6 AA6 PRO A 242 ASP A 247 1 6 HELIX 7 AA7 ASN A 255 GLY A 264 1 10 HELIX 8 AA8 THR A 269 LEU A 283 1 15 HELIX 9 AA9 GLY A 293 LYS A 295 5 3 HELIX 10 AB1 GLY A 322 GLU A 337 1 16 HELIX 11 AB2 SER A 340 VAL A 356 1 17 HELIX 12 AB3 ASP A 367 LYS A 376 1 10 HELIX 13 AB4 GLY B 106 LEU B 118 1 13 HELIX 14 AB5 ASP B 131 GLY B 142 1 12 HELIX 15 AB6 GLY B 181 ALA B 186 1 6 HELIX 16 AB7 SER B 192 ASN B 201 1 10 HELIX 17 AB8 PRO B 212 LYS B 225 1 14 HELIX 18 AB9 PRO B 242 ILE B 249 1 8 HELIX 19 AC1 ASN B 255 GLY B 264 1 10 HELIX 20 AC2 THR B 269 LYS B 282 1 14 HELIX 21 AC3 GLY B 293 LYS B 295 5 3 HELIX 22 AC4 GLY B 322 GLU B 337 1 16 HELIX 23 AC5 SER B 340 VAL B 356 1 17 HELIX 24 AC6 ALA B 361 MET B 365 5 5 HELIX 25 AC7 ASP B 367 PHE B 377 1 11 SHEET 1 AA1 9 VAL A 153 VAL A 156 0 SHEET 2 AA1 9 THR A 122 GLY A 129 1 N LEU A 128 O ARG A 154 SHEET 3 AA1 9 LEU A 71 VAL A 74 1 N VAL A 73 O VAL A 125 SHEET 4 AA1 9 ILE A 204 ARG A 209 1 O LEU A 206 N VAL A 74 SHEET 5 AA1 9 VAL A 230 GLY A 236 1 O ILE A 231 N LEU A 207 SHEET 6 AA1 9 ILE A 251 SER A 253 1 O ILE A 251 N LEU A 232 SHEET 7 AA1 9 GLN A 287 LYS A 291 1 O GLN A 287 N LEU A 252 SHEET 8 AA1 9 SER A 297 ILE A 301 -1 O PHE A 300 N VAL A 288 SHEET 9 AA1 9 ILE A 307 GLN A 309 -1 O ILE A 307 N LEU A 299 SHEET 1 AA2 5 GLY A 100 GLY A 105 0 SHEET 2 AA2 5 ASN A 78 ILE A 85 -1 N ASP A 80 O LEU A 103 SHEET 3 AA2 5 GLY A 162 GLN A 169 1 O ALA A 164 N ILE A 81 SHEET 4 AA2 5 ASN A 174 VAL A 179 -1 O SER A 175 N MET A 167 SHEET 5 AA2 5 THR B 94 SER B 96 1 O ILE B 95 N ILE A 176 SHEET 1 AA3 5 THR A 94 SER A 96 0 SHEET 2 AA3 5 ASN B 174 VAL B 179 1 O ILE B 176 N ILE A 95 SHEET 3 AA3 5 GLY B 162 GLN B 169 -1 N HIS B 163 O VAL B 179 SHEET 4 AA3 5 ASN B 78 ILE B 85 1 N ILE B 81 O ALA B 164 SHEET 5 AA3 5 THR B 99 GLY B 105 -1 O LEU B 103 N ASP B 80 SHEET 1 AA4 8 THR B 122 VAL B 125 0 SHEET 2 AA4 8 LEU B 71 VAL B 74 1 N VAL B 73 O VAL B 125 SHEET 3 AA4 8 ILE B 204 ARG B 209 1 O LEU B 206 N VAL B 72 SHEET 4 AA4 8 VAL B 230 GLY B 236 1 O ILE B 231 N VAL B 205 SHEET 5 AA4 8 ILE B 251 SER B 253 1 O SER B 253 N LEU B 232 SHEET 6 AA4 8 GLN B 287 LYS B 291 1 O LEU B 289 N LEU B 252 SHEET 7 AA4 8 SER B 297 ILE B 301 -1 O PHE B 300 N VAL B 288 SHEET 8 AA4 8 ILE B 307 GLN B 309 -1 O GLN B 309 N SER B 297 SHEET 1 AA5 2 ARG B 127 GLY B 129 0 SHEET 2 AA5 2 ARG B 154 VAL B 156 1 O ARG B 154 N LEU B 128 LINK O ASP A 319 NA NA A 404 1555 1555 2.89 LINK O THR A 321 NA NA A 404 1555 1555 2.89 LINK O CYS A 355 NA NA A 404 1555 1555 2.59 LINK O VAL A 358 NA NA A 404 1555 1555 2.80 LINK O GLY A 360 NA NA A 404 1555 1555 2.61 LINK OG SER A 364 NA NA A 404 1555 1555 2.68 LINK O1B ATP A 401 MG MG A 402 1555 1555 2.49 LINK O1A ATP A 401 MG MG A 402 1555 1555 2.31 LINK O3G ATP A 401 MG MG A 403 1555 1555 2.59 LINK O2B ATP A 401 MG MG A 403 1555 1555 2.22 LINK MG MG A 402 O HOH A 501 1555 1555 2.70 LINK MG MG A 402 O HOH A 506 1555 1555 2.81 LINK MG MG A 402 O HOH A 530 1555 1555 2.01 LINK MG MG A 403 O HOH A 514 1555 1555 2.33 LINK MG MG A 403 O HOH A 517 1555 1555 2.58 LINK O ASP B 319 NA NA B 404 1555 1555 2.49 LINK O THR B 321 NA NA B 404 1555 1555 2.94 LINK O CYS B 355 NA NA B 404 1555 1555 2.67 LINK O VAL B 358 NA NA B 404 1555 1555 2.83 LINK O GLY B 360 NA NA B 404 1555 1555 2.65 LINK OG SER B 364 NA NA B 404 1555 1555 2.90 LINK O2B ATP B 401 MG MG B 402 1555 1555 2.22 LINK O2A ATP B 401 MG MG B 402 1555 1555 2.62 LINK O1G ATP B 401 MG MG B 403 1555 1555 2.42 LINK O1B ATP B 401 MG MG B 403 1555 1555 2.28 LINK MG MG B 402 O HOH B 501 1555 1555 2.84 LINK MG MG B 402 O HOH B 542 1555 1555 2.57 LINK MG MG B 402 O HOH B 546 1555 1555 2.22 LINK MG MG B 403 O HOH B 511 1555 1555 2.76 SITE 1 AC1 16 ASN A 255 LYS A 291 LEU A 292 GLY A 293 SITE 2 AC1 16 GLY A 296 ILE A 311 ALA A 323 GLY A 324 SITE 3 AC1 16 ALA A 352 MG A 402 MG A 403 HOH A 501 SITE 4 AC1 16 HOH A 506 HOH A 512 HOH A 528 HOH A 530 SITE 1 AC2 4 ATP A 401 HOH A 501 HOH A 506 HOH A 530 SITE 1 AC3 4 LYS A 107 ATP A 401 HOH A 514 HOH A 517 SITE 1 AC4 6 ASP A 319 THR A 321 CYS A 355 VAL A 358 SITE 2 AC4 6 GLY A 360 SER A 364 SITE 1 AC5 17 ASN B 255 LYS B 291 LEU B 292 GLY B 293 SITE 2 AC5 17 GLY B 296 ILE B 312 VAL B 317 GLY B 324 SITE 3 AC5 17 ALA B 352 MG B 402 MG B 403 HOH B 501 SITE 4 AC5 17 HOH B 504 HOH B 505 HOH B 515 HOH B 528 SITE 5 AC5 17 HOH B 540 SITE 1 AC6 4 ATP B 401 HOH B 501 HOH B 542 HOH B 546 SITE 1 AC7 3 LYS B 107 ATP B 401 HOH B 511 SITE 1 AC8 6 ASP B 319 THR B 321 CYS B 355 VAL B 358 SITE 2 AC8 6 GLY B 360 SER B 364 CRYST1 99.445 99.445 164.952 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006062 0.00000