HEADER GENE REGULATION 22-OCT-18 6IMA TITLE CRYSTAL STRUCTURE OF ALKBH1 WITHOUT ALPHA-1 (N37-C369) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEIC ACID DIOXYGENASE ALKBH1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 1,ALPHA- COMPND 6 KETOGLUTARATE-DEPENDENT DIOXYGENASE ABH1,DNA 6MA DEMETHYLASE,DNA N6- COMPND 7 METHYL ADENINE DEMETHYLASE,DNA LYASE ABH1,DNA OXIDATIVE DEMETHYLASE COMPND 8 ALKBH1,TRNA N1-METHYL ADENINE DEMETHYLASE; COMPND 9 EC: 1.14.11.-,1.14.11.51,4.2.99.18,1.14.11.33; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ALKBH1, ABH, ALKBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-P3C KEYWDS DOUBLE-STRANDED BETA HELIX, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,S.YANG,W.ZHAO,H.LI REVDAT 2 08-APR-20 6IMA 1 JRNL REVDAT 1 22-JAN-20 6IMA 0 JRNL AUTH M.ZHANG,S.YANG,R.NELAKANTI,W.ZHAO,G.LIU,Z.LI,X.LIU,T.WU, JRNL AUTH 2 A.XIAO,H.LI JRNL TITL MAMMALIAN ALKBH1 SERVES AS AN N6-MA DEMETHYLASE OF UNPAIRING JRNL TITL 2 DNA. JRNL REF CELL RES. V. 30 197 2020 JRNL REFN ISSN 1001-0602 JRNL PMID 32051560 JRNL DOI 10.1038/S41422-019-0237-5 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC3_3206: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 62965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.760 REMARK 3 FREE R VALUE TEST SET COUNT : 6145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3384 - 8.0405 0.95 1878 137 0.1719 0.1901 REMARK 3 2 8.0405 - 6.3881 0.98 1907 211 0.1599 0.1911 REMARK 3 3 6.3881 - 5.5824 0.99 1861 226 0.1842 0.1948 REMARK 3 4 5.5824 - 5.0728 0.99 1871 231 0.1646 0.1958 REMARK 3 5 5.0728 - 4.7096 0.98 1920 183 0.1514 0.2051 REMARK 3 6 4.7096 - 4.4322 0.97 1899 174 0.1468 0.1941 REMARK 3 7 4.4322 - 4.2104 0.99 1906 222 0.1575 0.1935 REMARK 3 8 4.2104 - 4.0273 0.99 1889 195 0.1682 0.2242 REMARK 3 9 4.0273 - 3.8723 0.99 1898 244 0.1728 0.2488 REMARK 3 10 3.8723 - 3.7388 0.99 1874 195 0.1792 0.2247 REMARK 3 11 3.7388 - 3.6219 0.99 1920 217 0.1944 0.2185 REMARK 3 12 3.6219 - 3.5184 0.99 1897 182 0.1889 0.2338 REMARK 3 13 3.5184 - 3.4258 0.99 1956 202 0.1905 0.2842 REMARK 3 14 3.4258 - 3.3423 0.99 1920 214 0.1887 0.2471 REMARK 3 15 3.3423 - 3.2663 0.99 1869 203 0.2138 0.2802 REMARK 3 16 3.2663 - 3.1968 0.97 1846 234 0.2243 0.2801 REMARK 3 17 3.1968 - 3.1329 0.98 1860 211 0.2322 0.2967 REMARK 3 18 3.1329 - 3.0738 0.99 1904 221 0.2394 0.3015 REMARK 3 19 3.0738 - 3.0189 0.99 1902 213 0.2227 0.2997 REMARK 3 20 3.0189 - 2.9677 0.99 1903 195 0.2263 0.2717 REMARK 3 21 2.9677 - 2.9199 0.99 1905 201 0.2320 0.2859 REMARK 3 22 2.9199 - 2.8750 0.99 1899 235 0.2486 0.2925 REMARK 3 23 2.8750 - 2.8327 1.00 1860 228 0.2496 0.3354 REMARK 3 24 2.8327 - 2.7928 1.00 1947 179 0.2689 0.2879 REMARK 3 25 2.7928 - 2.7551 0.99 1923 200 0.2660 0.3713 REMARK 3 26 2.7551 - 2.7193 0.99 1942 179 0.2675 0.3357 REMARK 3 27 2.7193 - 2.6853 0.99 1844 244 0.2748 0.3358 REMARK 3 28 2.6853 - 2.6530 0.99 1906 215 0.2569 0.3035 REMARK 3 29 2.6530 - 2.6221 0.99 1994 172 0.2541 0.3465 REMARK 3 30 2.6221 - 2.5927 0.90 1720 182 0.2773 0.3340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.593 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.13 M AMMONIUM CITRATE REMARK 280 DIBASIC, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 101.53200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.03100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 101.53200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.03100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 THR A 37 REMARK 465 ALA A 49 REMARK 465 HIS A 50 REMARK 465 LEU A 51 REMARK 465 ALA A 52 REMARK 465 ARG A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 LYS A 56 REMARK 465 PRO A 57 REMARK 465 VAL A 232 REMARK 465 ASP A 233 REMARK 465 ARG A 234 REMARK 465 SER A 235 REMARK 465 GLU A 236 REMARK 465 THR A 349 REMARK 465 GLY A 350 REMARK 465 GLN A 351 REMARK 465 ASP A 352 REMARK 465 PHE A 353 REMARK 465 PRO A 354 REMARK 465 LEU A 355 REMARK 465 GLU A 356 REMARK 465 PRO A 357 REMARK 465 VAL A 358 REMARK 465 GLU A 359 REMARK 465 GLU A 360 REMARK 465 THR A 361 REMARK 465 LYS A 362 REMARK 465 ARG A 363 REMARK 465 ASP A 364 REMARK 465 ILE A 365 REMARK 465 ALA A 366 REMARK 465 ALA A 367 REMARK 465 ASP A 368 REMARK 465 GLY A 369 REMARK 465 GLY B 35 REMARK 465 PRO B 36 REMARK 465 HIS B 50 REMARK 465 LEU B 51 REMARK 465 ALA B 52 REMARK 465 ARG B 53 REMARK 465 SER B 54 REMARK 465 PRO B 55 REMARK 465 LYS B 56 REMARK 465 PRO B 57 REMARK 465 GLY B 58 REMARK 465 SER B 153 REMARK 465 LYS B 154 REMARK 465 GLU B 155 REMARK 465 VAL B 156 REMARK 465 THR B 157 REMARK 465 LYS B 158 REMARK 465 ARG B 159 REMARK 465 ARG B 160 REMARK 465 SER B 226 REMARK 465 THR B 227 REMARK 465 LEU B 228 REMARK 465 GLY B 229 REMARK 465 ILE B 230 REMARK 465 HIS B 231 REMARK 465 VAL B 232 REMARK 465 ASP B 233 REMARK 465 ARG B 234 REMARK 465 SER B 235 REMARK 465 GLU B 236 REMARK 465 LEU B 237 REMARK 465 ASP B 238 REMARK 465 GLN B 351 REMARK 465 ASP B 352 REMARK 465 PHE B 353 REMARK 465 PRO B 354 REMARK 465 LEU B 355 REMARK 465 GLU B 356 REMARK 465 PRO B 357 REMARK 465 VAL B 358 REMARK 465 GLU B 359 REMARK 465 GLU B 360 REMARK 465 THR B 361 REMARK 465 LYS B 362 REMARK 465 ARG B 363 REMARK 465 ASP B 364 REMARK 465 ILE B 365 REMARK 465 ALA B 366 REMARK 465 ALA B 367 REMARK 465 ASP B 368 REMARK 465 GLY B 369 REMARK 465 GLY C 35 REMARK 465 PRO C 36 REMARK 465 THR C 37 REMARK 465 ALA C 49 REMARK 465 HIS C 50 REMARK 465 LEU C 51 REMARK 465 ALA C 52 REMARK 465 ARG C 53 REMARK 465 SER C 54 REMARK 465 PRO C 55 REMARK 465 LYS C 56 REMARK 465 PRO C 57 REMARK 465 GLY C 58 REMARK 465 VAL C 156 REMARK 465 THR C 157 REMARK 465 LYS C 158 REMARK 465 ARG C 159 REMARK 465 ARG C 160 REMARK 465 ASN C 178 REMARK 465 TRP C 179 REMARK 465 SER C 226 REMARK 465 THR C 227 REMARK 465 LEU C 228 REMARK 465 GLY C 229 REMARK 465 ILE C 230 REMARK 465 HIS C 231 REMARK 465 VAL C 232 REMARK 465 ASP C 233 REMARK 465 ARG C 234 REMARK 465 SER C 235 REMARK 465 GLU C 236 REMARK 465 LEU C 237 REMARK 465 ASP C 238 REMARK 465 GLY C 350 REMARK 465 GLN C 351 REMARK 465 ASP C 352 REMARK 465 PHE C 353 REMARK 465 PRO C 354 REMARK 465 LEU C 355 REMARK 465 GLU C 356 REMARK 465 PRO C 357 REMARK 465 VAL C 358 REMARK 465 GLU C 359 REMARK 465 GLU C 360 REMARK 465 THR C 361 REMARK 465 LYS C 362 REMARK 465 ARG C 363 REMARK 465 ASP C 364 REMARK 465 ILE C 365 REMARK 465 ALA C 366 REMARK 465 ALA C 367 REMARK 465 ASP C 368 REMARK 465 GLY C 369 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 104 93.21 -13.86 REMARK 500 PHE A 209 68.74 -107.78 REMARK 500 LEU A 228 39.67 -99.11 REMARK 500 ASN B 104 98.07 -25.11 REMARK 500 VAL B 346 -56.81 -131.66 REMARK 500 THR B 349 32.17 -83.93 REMARK 500 ASN C 104 88.47 -3.04 REMARK 500 SER C 153 68.13 -154.13 REMARK 500 SER C 181 -179.82 -63.52 REMARK 500 PHE C 209 60.45 -109.33 REMARK 500 ASN C 316 41.43 -101.66 REMARK 500 VAL C 346 -61.17 -134.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 401 DBREF 6IMA A 37 369 UNP P0CB42 ALKB1_MOUSE 37 369 DBREF 6IMA B 37 369 UNP P0CB42 ALKB1_MOUSE 37 369 DBREF 6IMA C 37 369 UNP P0CB42 ALKB1_MOUSE 37 369 SEQADV 6IMA GLY A 35 UNP P0CB42 EXPRESSION TAG SEQADV 6IMA PRO A 36 UNP P0CB42 EXPRESSION TAG SEQADV 6IMA GLY B 35 UNP P0CB42 EXPRESSION TAG SEQADV 6IMA PRO B 36 UNP P0CB42 EXPRESSION TAG SEQADV 6IMA GLY C 35 UNP P0CB42 EXPRESSION TAG SEQADV 6IMA PRO C 36 UNP P0CB42 EXPRESSION TAG SEQRES 1 A 335 GLY PRO THR ALA ASP LEU GLY ALA VAL ILE ASP PHE SER SEQRES 2 A 335 GLU ALA HIS LEU ALA ARG SER PRO LYS PRO GLY VAL PRO SEQRES 3 A 335 GLN VAL VAL ARG PHE PRO LEU ASN VAL SER SER VAL THR SEQRES 4 A 335 GLU ARG ASP ALA GLU ARG VAL GLY LEU GLU PRO VAL SER SEQRES 5 A 335 LYS TRP ARG ALA TYR GLY LEU GLU GLY TYR PRO GLY PHE SEQRES 6 A 335 ILE PHE ILE PRO ASN PRO PHE LEU PRO GLY CYS GLN ARG SEQRES 7 A 335 HIS TRP VAL LYS GLN CYS LEU LYS LEU TYR SER GLN LYS SEQRES 8 A 335 PRO ASN VAL CYS ASN LEU ASP LYS HIS MSE THR LYS GLU SEQRES 9 A 335 GLU THR GLN GLY LEU TRP GLU GLN SER LYS GLU VAL LEU SEQRES 10 A 335 ARG SER LYS GLU VAL THR LYS ARG ARG PRO ARG SER LEU SEQRES 11 A 335 LEU GLU ARG LEU ARG TRP VAL THR LEU GLY TYR HIS TYR SEQRES 12 A 335 ASN TRP ASP SER LYS LYS TYR SER ALA ASP HIS TYR THR SEQRES 13 A 335 PRO PHE PRO SER ASP LEU ALA PHE LEU SER GLU GLN VAL SEQRES 14 A 335 ALA THR ALA CYS GLY PHE GLN GLY PHE GLN ALA GLU ALA SEQRES 15 A 335 GLY ILE LEU ASN TYR TYR ARG LEU ASP SER THR LEU GLY SEQRES 16 A 335 ILE HIS VAL ASP ARG SER GLU LEU ASP HIS SER LYS PRO SEQRES 17 A 335 LEU LEU SER PHE SER PHE GLY GLN SER ALA ILE PHE LEU SEQRES 18 A 335 LEU GLY GLY LEU LYS ARG ASP GLU ALA PRO THR ALA MSE SEQRES 19 A 335 PHE MSE HIS SER GLY ASP ILE MSE VAL MSE SER GLY PHE SEQRES 20 A 335 SER ARG LEU LEU ASN HIS ALA VAL PRO ARG VAL LEU PRO SEQRES 21 A 335 HIS PRO ASP GLY GLU CYS LEU PRO HIS CYS LEU GLU THR SEQRES 22 A 335 PRO LEU PRO ALA VAL LEU PRO SER ASN SER LEU VAL GLU SEQRES 23 A 335 PRO CYS SER VAL GLU ASP TRP GLN VAL CYS ALA THR TYR SEQRES 24 A 335 LEU ARG THR ALA ARG VAL ASN MSE THR VAL ARG GLN VAL SEQRES 25 A 335 LEU ALA THR GLY GLN ASP PHE PRO LEU GLU PRO VAL GLU SEQRES 26 A 335 GLU THR LYS ARG ASP ILE ALA ALA ASP GLY SEQRES 1 B 335 GLY PRO THR ALA ASP LEU GLY ALA VAL ILE ASP PHE SER SEQRES 2 B 335 GLU ALA HIS LEU ALA ARG SER PRO LYS PRO GLY VAL PRO SEQRES 3 B 335 GLN VAL VAL ARG PHE PRO LEU ASN VAL SER SER VAL THR SEQRES 4 B 335 GLU ARG ASP ALA GLU ARG VAL GLY LEU GLU PRO VAL SER SEQRES 5 B 335 LYS TRP ARG ALA TYR GLY LEU GLU GLY TYR PRO GLY PHE SEQRES 6 B 335 ILE PHE ILE PRO ASN PRO PHE LEU PRO GLY CYS GLN ARG SEQRES 7 B 335 HIS TRP VAL LYS GLN CYS LEU LYS LEU TYR SER GLN LYS SEQRES 8 B 335 PRO ASN VAL CYS ASN LEU ASP LYS HIS MSE THR LYS GLU SEQRES 9 B 335 GLU THR GLN GLY LEU TRP GLU GLN SER LYS GLU VAL LEU SEQRES 10 B 335 ARG SER LYS GLU VAL THR LYS ARG ARG PRO ARG SER LEU SEQRES 11 B 335 LEU GLU ARG LEU ARG TRP VAL THR LEU GLY TYR HIS TYR SEQRES 12 B 335 ASN TRP ASP SER LYS LYS TYR SER ALA ASP HIS TYR THR SEQRES 13 B 335 PRO PHE PRO SER ASP LEU ALA PHE LEU SER GLU GLN VAL SEQRES 14 B 335 ALA THR ALA CYS GLY PHE GLN GLY PHE GLN ALA GLU ALA SEQRES 15 B 335 GLY ILE LEU ASN TYR TYR ARG LEU ASP SER THR LEU GLY SEQRES 16 B 335 ILE HIS VAL ASP ARG SER GLU LEU ASP HIS SER LYS PRO SEQRES 17 B 335 LEU LEU SER PHE SER PHE GLY GLN SER ALA ILE PHE LEU SEQRES 18 B 335 LEU GLY GLY LEU LYS ARG ASP GLU ALA PRO THR ALA MSE SEQRES 19 B 335 PHE MSE HIS SER GLY ASP ILE MSE VAL MSE SER GLY PHE SEQRES 20 B 335 SER ARG LEU LEU ASN HIS ALA VAL PRO ARG VAL LEU PRO SEQRES 21 B 335 HIS PRO ASP GLY GLU CYS LEU PRO HIS CYS LEU GLU THR SEQRES 22 B 335 PRO LEU PRO ALA VAL LEU PRO SER ASN SER LEU VAL GLU SEQRES 23 B 335 PRO CYS SER VAL GLU ASP TRP GLN VAL CYS ALA THR TYR SEQRES 24 B 335 LEU ARG THR ALA ARG VAL ASN MSE THR VAL ARG GLN VAL SEQRES 25 B 335 LEU ALA THR GLY GLN ASP PHE PRO LEU GLU PRO VAL GLU SEQRES 26 B 335 GLU THR LYS ARG ASP ILE ALA ALA ASP GLY SEQRES 1 C 335 GLY PRO THR ALA ASP LEU GLY ALA VAL ILE ASP PHE SER SEQRES 2 C 335 GLU ALA HIS LEU ALA ARG SER PRO LYS PRO GLY VAL PRO SEQRES 3 C 335 GLN VAL VAL ARG PHE PRO LEU ASN VAL SER SER VAL THR SEQRES 4 C 335 GLU ARG ASP ALA GLU ARG VAL GLY LEU GLU PRO VAL SER SEQRES 5 C 335 LYS TRP ARG ALA TYR GLY LEU GLU GLY TYR PRO GLY PHE SEQRES 6 C 335 ILE PHE ILE PRO ASN PRO PHE LEU PRO GLY CYS GLN ARG SEQRES 7 C 335 HIS TRP VAL LYS GLN CYS LEU LYS LEU TYR SER GLN LYS SEQRES 8 C 335 PRO ASN VAL CYS ASN LEU ASP LYS HIS MSE THR LYS GLU SEQRES 9 C 335 GLU THR GLN GLY LEU TRP GLU GLN SER LYS GLU VAL LEU SEQRES 10 C 335 ARG SER LYS GLU VAL THR LYS ARG ARG PRO ARG SER LEU SEQRES 11 C 335 LEU GLU ARG LEU ARG TRP VAL THR LEU GLY TYR HIS TYR SEQRES 12 C 335 ASN TRP ASP SER LYS LYS TYR SER ALA ASP HIS TYR THR SEQRES 13 C 335 PRO PHE PRO SER ASP LEU ALA PHE LEU SER GLU GLN VAL SEQRES 14 C 335 ALA THR ALA CYS GLY PHE GLN GLY PHE GLN ALA GLU ALA SEQRES 15 C 335 GLY ILE LEU ASN TYR TYR ARG LEU ASP SER THR LEU GLY SEQRES 16 C 335 ILE HIS VAL ASP ARG SER GLU LEU ASP HIS SER LYS PRO SEQRES 17 C 335 LEU LEU SER PHE SER PHE GLY GLN SER ALA ILE PHE LEU SEQRES 18 C 335 LEU GLY GLY LEU LYS ARG ASP GLU ALA PRO THR ALA MSE SEQRES 19 C 335 PHE MSE HIS SER GLY ASP ILE MSE VAL MSE SER GLY PHE SEQRES 20 C 335 SER ARG LEU LEU ASN HIS ALA VAL PRO ARG VAL LEU PRO SEQRES 21 C 335 HIS PRO ASP GLY GLU CYS LEU PRO HIS CYS LEU GLU THR SEQRES 22 C 335 PRO LEU PRO ALA VAL LEU PRO SER ASN SER LEU VAL GLU SEQRES 23 C 335 PRO CYS SER VAL GLU ASP TRP GLN VAL CYS ALA THR TYR SEQRES 24 C 335 LEU ARG THR ALA ARG VAL ASN MSE THR VAL ARG GLN VAL SEQRES 25 C 335 LEU ALA THR GLY GLN ASP PHE PRO LEU GLU PRO VAL GLU SEQRES 26 C 335 GLU THR LYS ARG ASP ILE ALA ALA ASP GLY MODRES 6IMA MSE A 135 MET MODIFIED RESIDUE MODRES 6IMA MSE A 268 MET MODIFIED RESIDUE MODRES 6IMA MSE A 270 MET MODIFIED RESIDUE MODRES 6IMA MSE A 276 MET MODIFIED RESIDUE MODRES 6IMA MSE A 278 MET MODIFIED RESIDUE MODRES 6IMA MSE A 341 MET MODIFIED RESIDUE MODRES 6IMA MSE B 135 MET MODIFIED RESIDUE MODRES 6IMA MSE B 268 MET MODIFIED RESIDUE MODRES 6IMA MSE B 270 MET MODIFIED RESIDUE MODRES 6IMA MSE B 276 MET MODIFIED RESIDUE MODRES 6IMA MSE B 278 MET MODIFIED RESIDUE MODRES 6IMA MSE B 341 MET MODIFIED RESIDUE MODRES 6IMA MSE C 135 MET MODIFIED RESIDUE MODRES 6IMA MSE C 268 MET MODIFIED RESIDUE MODRES 6IMA MSE C 270 MET MODIFIED RESIDUE MODRES 6IMA MSE C 276 MET MODIFIED RESIDUE MODRES 6IMA MSE C 278 MET MODIFIED RESIDUE MODRES 6IMA MSE C 341 MET MODIFIED RESIDUE HET MSE A 135 8 HET MSE A 268 8 HET MSE A 270 8 HET MSE A 276 8 HET MSE A 278 8 HET MSE A 341 8 HET MSE B 135 8 HET MSE B 268 8 HET MSE B 270 8 HET MSE B 276 8 HET MSE B 278 8 HET MSE B 341 8 HET MSE C 135 8 HET MSE C 268 8 HET MSE C 270 8 HET MSE C 276 8 HET MSE C 278 8 HET MSE C 341 8 HET CIT A 401 13 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *104(H2 O) HELIX 1 AA1 THR A 73 VAL A 80 1 8 HELIX 2 AA2 PRO A 84 TRP A 88 5 5 HELIX 3 AA3 CYS A 110 LEU A 121 1 12 HELIX 4 AA4 LEU A 131 HIS A 134 5 4 HELIX 5 AA5 THR A 136 GLN A 141 1 6 HELIX 6 AA6 GLY A 142 SER A 153 1 12 HELIX 7 AA7 SER A 163 LEU A 168 1 6 HELIX 8 AA8 PRO A 193 CYS A 207 1 15 HELIX 9 AA9 GLY A 280 ARG A 283 5 4 HELIX 10 AB1 PRO A 302 GLU A 306 5 5 HELIX 11 AB2 SER A 323 ARG A 335 1 13 HELIX 12 AB3 THR B 73 VAL B 80 1 8 HELIX 13 AB4 PRO B 84 TRP B 88 5 5 HELIX 14 AB5 CYS B 110 LEU B 121 1 12 HELIX 15 AB6 TRP B 144 GLU B 149 1 6 HELIX 16 AB7 LEU B 164 LEU B 168 5 5 HELIX 17 AB8 PRO B 193 CYS B 207 1 15 HELIX 18 AB9 PHE B 281 ASN B 286 5 6 HELIX 19 AC1 PRO B 302 GLU B 306 5 5 HELIX 20 AC2 SER B 323 ARG B 335 1 13 HELIX 21 AC3 THR C 73 VAL C 80 1 8 HELIX 22 AC4 PRO C 84 TRP C 88 5 5 HELIX 23 AC5 GLY C 109 LEU C 121 1 13 HELIX 24 AC6 LEU C 131 LYS C 133 5 3 HELIX 25 AC7 THR C 136 GLN C 141 1 6 HELIX 26 AC8 GLY C 142 LEU C 151 1 10 HELIX 27 AC9 SER C 163 LEU C 168 1 6 HELIX 28 AD1 PRO C 193 CYS C 207 1 15 HELIX 29 AD2 GLY C 280 LEU C 285 1 6 HELIX 30 AD3 PRO C 302 THR C 307 1 6 HELIX 31 AD4 SER C 323 ARG C 335 1 13 SHEET 1 AA1 2 VAL A 62 ARG A 64 0 SHEET 2 AA1 2 TYR A 91 LEU A 93 -1 O GLY A 92 N VAL A 63 SHEET 1 AA2 7 PHE A 99 ILE A 102 0 SHEET 2 AA2 7 ILE A 275 MSE A 278 -1 O ILE A 275 N ILE A 102 SHEET 3 AA2 7 LEU A 243 GLY A 249 -1 N SER A 245 O MSE A 276 SHEET 4 AA2 7 ALA A 337 ARG A 344 -1 O MSE A 341 N PHE A 246 SHEET 5 AA2 7 ALA A 216 ARG A 223 -1 N TYR A 222 O ARG A 338 SHEET 6 AA2 7 TRP A 170 GLY A 174 -1 N VAL A 171 O LEU A 219 SHEET 7 AA2 7 VAL A 128 CYS A 129 -1 N VAL A 128 O THR A 172 SHEET 1 AA3 2 TYR A 177 ASN A 178 0 SHEET 2 AA3 2 LYS A 183 TYR A 184 -1 O LYS A 183 N ASN A 178 SHEET 1 AA4 2 ALA A 252 LEU A 256 0 SHEET 2 AA4 2 THR A 266 MSE A 270 -1 O THR A 266 N LEU A 256 SHEET 1 AA5 9 VAL B 62 ARG B 64 0 SHEET 2 AA5 9 TYR B 91 LEU B 93 -1 O GLY B 92 N VAL B 63 SHEET 3 AA5 9 TYR B 96 ILE B 102 -1 O PHE B 101 N TYR B 91 SHEET 4 AA5 9 ILE B 275 MSE B 278 -1 O VAL B 277 N ILE B 100 SHEET 5 AA5 9 LEU B 243 GLY B 249 -1 N SER B 245 O MSE B 276 SHEET 6 AA5 9 ALA B 337 ARG B 344 -1 O VAL B 339 N PHE B 248 SHEET 7 AA5 9 ALA B 216 ARG B 223 -1 N ALA B 216 O ARG B 344 SHEET 8 AA5 9 TRP B 170 GLY B 174 -1 N LEU B 173 O GLY B 217 SHEET 9 AA5 9 VAL B 128 CYS B 129 -1 N VAL B 128 O THR B 172 SHEET 1 AA6 2 TYR B 177 ASN B 178 0 SHEET 2 AA6 2 LYS B 183 TYR B 184 -1 O LYS B 183 N ASN B 178 SHEET 1 AA7 2 ALA B 252 LEU B 256 0 SHEET 2 AA7 2 THR B 266 MSE B 270 -1 O THR B 266 N LEU B 256 SHEET 1 AA8 9 VAL C 62 ARG C 64 0 SHEET 2 AA8 9 TYR C 91 LEU C 93 -1 O GLY C 92 N VAL C 63 SHEET 3 AA8 9 TYR C 96 ILE C 102 -1 O PHE C 101 N TYR C 91 SHEET 4 AA8 9 ILE C 275 MSE C 278 -1 O ILE C 275 N ILE C 102 SHEET 5 AA8 9 LEU C 243 GLY C 249 -1 N SER C 245 O MSE C 276 SHEET 6 AA8 9 ALA C 337 ARG C 344 -1 O MSE C 341 N PHE C 246 SHEET 7 AA8 9 ALA C 216 ARG C 223 -1 N ASN C 220 O ASN C 340 SHEET 8 AA8 9 TRP C 170 GLY C 174 -1 N LEU C 173 O GLY C 217 SHEET 9 AA8 9 VAL C 128 CYS C 129 -1 N VAL C 128 O THR C 172 SHEET 1 AA9 2 ALA C 252 LEU C 256 0 SHEET 2 AA9 2 THR C 266 MSE C 270 -1 O MSE C 268 N PHE C 254 LINK C HIS A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N THR A 136 1555 1555 1.33 LINK C ALA A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N PHE A 269 1555 1555 1.33 LINK C PHE A 269 N MSE A 270 1555 1555 1.33 LINK C MSE A 270 N HIS A 271 1555 1555 1.33 LINK C ILE A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N VAL A 277 1555 1555 1.33 LINK C VAL A 277 N MSE A 278 1555 1555 1.33 LINK C MSE A 278 N SER A 279 1555 1555 1.33 LINK C ASN A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N THR A 342 1555 1555 1.33 LINK C HIS B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N THR B 136 1555 1555 1.33 LINK C ALA B 267 N MSE B 268 1555 1555 1.33 LINK C MSE B 268 N PHE B 269 1555 1555 1.33 LINK C PHE B 269 N MSE B 270 1555 1555 1.33 LINK C MSE B 270 N HIS B 271 1555 1555 1.33 LINK C ILE B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N VAL B 277 1555 1555 1.33 LINK C VAL B 277 N MSE B 278 1555 1555 1.33 LINK C MSE B 278 N SER B 279 1555 1555 1.33 LINK C ASN B 340 N MSE B 341 1555 1555 1.33 LINK C MSE B 341 N THR B 342 1555 1555 1.33 LINK C HIS C 134 N MSE C 135 1555 1555 1.33 LINK C MSE C 135 N THR C 136 1555 1555 1.33 LINK C ALA C 267 N MSE C 268 1555 1555 1.33 LINK C MSE C 268 N PHE C 269 1555 1555 1.33 LINK C PHE C 269 N MSE C 270 1555 1555 1.33 LINK C MSE C 270 N HIS C 271 1555 1555 1.33 LINK C ILE C 275 N MSE C 276 1555 1555 1.33 LINK C MSE C 276 N VAL C 277 1555 1555 1.33 LINK C VAL C 277 N MSE C 278 1555 1555 1.33 LINK C MSE C 278 N SER C 279 1555 1555 1.33 LINK C ASN C 340 N MSE C 341 1555 1555 1.33 LINK C MSE C 341 N THR C 342 1555 1555 1.33 CISPEP 1 LYS A 125 PRO A 126 0 4.12 CISPEP 2 LYS B 125 PRO B 126 0 2.09 CISPEP 3 LYS C 125 PRO C 126 0 5.68 CISPEP 4 ARG C 152 SER C 153 0 -5.28 SITE 1 AC1 7 ASN A 130 LYS A 133 HIS A 134 ARG A 162 SITE 2 AC1 7 ARG A 167 ARG A 169 ASN C 316 CRYST1 203.064 56.062 105.664 90.00 117.89 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004925 0.000000 0.002606 0.00000 SCALE2 0.000000 0.017837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010707 0.00000