HEADER HYDROLASE/HYDROLASE INHIBITOR 22-OCT-18 6IMD TITLE CRYSTAL STRUCTURE OF PDE4D COMPLEXED WITH A NOVEL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PDE4D, DPDE3,PDE43; COMPND 5 EC: 3.1.4.53; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4D, DPDE3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PDE4D, INHIBITOR, COMPLEX, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,H.SU,Y.XU REVDAT 2 27-MAR-24 6IMD 1 LINK REVDAT 1 23-OCT-19 6IMD 0 JRNL AUTH X.ZHANG,G.DONG,H.LI,W.CHEN,J.LI,C.FENG,Z.GU,F.ZHU,R.ZHANG, JRNL AUTH 2 M.LI,W.TANG,H.LIU,Y.XU JRNL TITL STRUCTURE-AIDED IDENTIFICATION AND OPTIMIZATION OF JRNL TITL 2 TETRAHYDRO-ISOQUINOLINES AS NOVEL PDE4 INHIBITORS LEADING TO JRNL TITL 3 DISCOVERY OF AN EFFECTIVE ANTIPSORIASIS AGENT. JRNL REF J.MED.CHEM. V. 62 5579 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31099559 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00518 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 114867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 5684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0301 - 4.6562 0.98 4142 226 0.1737 0.1821 REMARK 3 2 4.6562 - 3.6966 1.00 4035 193 0.1561 0.2085 REMARK 3 3 3.6966 - 3.2296 0.97 3900 192 0.1637 0.1405 REMARK 3 4 3.2296 - 2.9344 1.00 3996 195 0.1685 0.2051 REMARK 3 5 2.9344 - 2.7242 1.00 3978 203 0.1679 0.2046 REMARK 3 6 2.7242 - 2.5636 1.00 3955 207 0.1663 0.1839 REMARK 3 7 2.5636 - 2.4352 1.00 3895 210 0.1627 0.1787 REMARK 3 8 2.4352 - 2.3292 0.99 3897 221 0.1568 0.1601 REMARK 3 9 2.3292 - 2.2396 1.00 3893 218 0.1533 0.1761 REMARK 3 10 2.2396 - 2.1623 1.00 3855 237 0.1555 0.1843 REMARK 3 11 2.1623 - 2.0947 1.00 3952 190 0.1576 0.1818 REMARK 3 12 2.0947 - 2.0348 1.00 3891 233 0.1634 0.1786 REMARK 3 13 2.0348 - 1.9813 1.00 3950 169 0.1667 0.1825 REMARK 3 14 1.9813 - 1.9329 1.00 3892 200 0.1673 0.2048 REMARK 3 15 1.9329 - 1.8890 1.00 3885 217 0.1721 0.1961 REMARK 3 16 1.8890 - 1.8488 0.99 3889 179 0.1721 0.2065 REMARK 3 17 1.8488 - 1.8118 1.00 3882 194 0.1709 0.2081 REMARK 3 18 1.8118 - 1.7776 1.00 3899 191 0.1707 0.2011 REMARK 3 19 1.7776 - 1.7459 1.00 3865 214 0.1690 0.1954 REMARK 3 20 1.7459 - 1.7163 1.00 3861 204 0.1745 0.2275 REMARK 3 21 1.7163 - 1.6886 1.00 3901 198 0.1778 0.2022 REMARK 3 22 1.6886 - 1.6626 1.00 3868 204 0.1872 0.2157 REMARK 3 23 1.6626 - 1.6382 0.99 3857 191 0.1859 0.2264 REMARK 3 24 1.6382 - 1.6151 0.97 3823 185 0.1941 0.2244 REMARK 3 25 1.6151 - 1.5933 0.93 3584 188 0.1900 0.2330 REMARK 3 26 1.5933 - 1.5726 0.79 3094 155 0.1935 0.2185 REMARK 3 27 1.5726 - 1.5529 0.65 2511 155 0.1970 0.2105 REMARK 3 28 1.5529 - 1.5342 0.61 2389 111 0.2073 0.2195 REMARK 3 29 1.5342 - 1.5164 0.52 1971 118 0.2053 0.2635 REMARK 3 30 1.5164 - 1.4993 0.43 1673 86 0.2036 0.2471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5371 REMARK 3 ANGLE : 1.338 7291 REMARK 3 CHIRALITY : 0.105 843 REMARK 3 PLANARITY : 0.008 934 REMARK 3 DIHEDRAL : 14.742 1962 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6858 12.7301 12.6163 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.1706 REMARK 3 T33: 0.1207 T12: 0.0246 REMARK 3 T13: -0.0273 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.1547 L22: 2.8559 REMARK 3 L33: 2.0349 L12: -0.1923 REMARK 3 L13: -0.3889 L23: -1.6684 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: 0.3137 S13: 0.1974 REMARK 3 S21: -0.4946 S22: -0.0647 S23: 0.1860 REMARK 3 S31: -0.2884 S32: -0.2048 S33: -0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0439 11.4119 27.2745 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.0837 REMARK 3 T33: 0.0981 T12: 0.0099 REMARK 3 T13: -0.0147 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.2656 L22: 1.3339 REMARK 3 L33: 1.7641 L12: -0.1190 REMARK 3 L13: -0.3503 L23: 0.2393 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.0431 S13: 0.0447 REMARK 3 S21: -0.1267 S22: -0.0335 S23: 0.1599 REMARK 3 S31: -0.1877 S32: -0.2183 S33: -0.0105 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9309 6.0633 38.6415 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.1712 REMARK 3 T33: 0.1031 T12: -0.0154 REMARK 3 T13: 0.0007 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8928 L22: 1.0468 REMARK 3 L33: 2.8734 L12: -0.1036 REMARK 3 L13: 0.4589 L23: -0.5488 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: -0.0370 S13: -0.0315 REMARK 3 S21: 0.1111 S22: 0.0163 S23: -0.1558 REMARK 3 S31: -0.0367 S32: 0.5079 S33: -0.0348 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9143 16.9221 38.0679 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.0960 REMARK 3 T33: 0.1038 T12: -0.0060 REMARK 3 T13: 0.0248 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.3459 L22: 1.7370 REMARK 3 L33: 1.3366 L12: -1.3461 REMARK 3 L13: 0.1714 L23: -0.5765 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0983 S13: 0.1897 REMARK 3 S21: 0.2094 S22: -0.0030 S23: 0.0473 REMARK 3 S31: -0.3237 S32: -0.0364 S33: 0.0350 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4382 -3.3032 37.8709 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1537 REMARK 3 T33: 0.1889 T12: -0.0498 REMARK 3 T13: 0.0455 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.0201 L22: 1.5242 REMARK 3 L33: 0.9418 L12: 0.2198 REMARK 3 L13: -0.0549 L23: -0.1140 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: -0.0810 S13: -0.2361 REMARK 3 S21: 0.1461 S22: 0.0762 S23: 0.2601 REMARK 3 S31: 0.2728 S32: -0.2062 S33: 0.0140 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7791 -0.2569 25.1582 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.1132 REMARK 3 T33: 0.0999 T12: -0.0124 REMARK 3 T13: 0.0071 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.3479 L22: 0.9905 REMARK 3 L33: 1.7851 L12: -0.1863 REMARK 3 L13: 0.0700 L23: 0.3712 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.0910 S13: -0.0725 REMARK 3 S21: -0.0550 S22: -0.0085 S23: -0.0241 REMARK 3 S31: 0.0309 S32: 0.2992 S33: -0.0519 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0206 -6.7921 23.9446 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.3871 REMARK 3 T33: 0.2704 T12: 0.0823 REMARK 3 T13: 0.0071 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.7391 L22: 2.0811 REMARK 3 L33: 2.0995 L12: 1.1568 REMARK 3 L13: 1.1138 L23: 1.8542 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.1534 S13: -0.0704 REMARK 3 S21: 0.1777 S22: 0.2140 S23: -0.3663 REMARK 3 S31: 0.2583 S32: 0.8521 S33: -0.1370 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5171 -11.4885 19.2865 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.0790 REMARK 3 T33: 0.1909 T12: -0.0434 REMARK 3 T13: 0.0167 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.3856 L22: 1.2565 REMARK 3 L33: 3.0652 L12: -0.1951 REMARK 3 L13: -0.5413 L23: -0.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.1099 S12: 0.1402 S13: -0.3067 REMARK 3 S21: -0.0421 S22: -0.1539 S23: 0.2309 REMARK 3 S31: 0.5898 S32: -0.1622 S33: 0.1878 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2591 4.0961 68.9767 REMARK 3 T TENSOR REMARK 3 T11: 0.2169 T22: 0.4720 REMARK 3 T33: 0.1744 T12: 0.2016 REMARK 3 T13: -0.0791 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 0.6798 L22: 1.1459 REMARK 3 L33: 1.2413 L12: -0.2127 REMARK 3 L13: -0.3776 L23: -0.3860 REMARK 3 S TENSOR REMARK 3 S11: -0.1575 S12: -0.5103 S13: 0.0807 REMARK 3 S21: 0.3309 S22: 0.2184 S23: -0.3918 REMARK 3 S31: 0.3221 S32: 0.9658 S33: 0.0490 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 200 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4948 13.0245 54.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.1107 T22: 0.1517 REMARK 3 T33: 0.1027 T12: 0.0408 REMARK 3 T13: 0.0058 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.7699 L22: 1.0345 REMARK 3 L33: 4.8666 L12: 0.1037 REMARK 3 L13: 0.2649 L23: 0.9039 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.1278 S13: 0.1422 REMARK 3 S21: -0.0745 S22: 0.0529 S23: 0.1288 REMARK 3 S31: -0.4343 S32: -0.5232 S33: -0.0580 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 228 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0414 8.0846 53.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.2301 REMARK 3 T33: 0.1742 T12: -0.0007 REMARK 3 T13: 0.0237 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 4.0493 L22: 1.1786 REMARK 3 L33: 1.6105 L12: -0.3882 REMARK 3 L13: -0.7025 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: 0.0411 S13: 0.0964 REMARK 3 S21: -0.1202 S22: 0.2131 S23: -0.3763 REMARK 3 S31: -0.0365 S32: 0.4578 S33: -0.0770 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 254 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3848 -1.9481 52.6698 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.1650 REMARK 3 T33: 0.0997 T12: 0.0608 REMARK 3 T13: 0.0214 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.2727 L22: 4.3667 REMARK 3 L33: 2.2238 L12: -0.5908 REMARK 3 L13: -1.0540 L23: 1.5889 REMARK 3 S TENSOR REMARK 3 S11: -0.4126 S12: 0.3296 S13: -0.4346 REMARK 3 S21: -0.0907 S22: 0.1246 S23: -0.2081 REMARK 3 S31: 0.4890 S32: 0.2898 S33: 0.1943 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3478 -14.4687 62.5593 REMARK 3 T TENSOR REMARK 3 T11: 0.5348 T22: 0.2391 REMARK 3 T33: 0.2675 T12: 0.0809 REMARK 3 T13: 0.1185 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.4314 L22: 3.3103 REMARK 3 L33: 0.2478 L12: -2.1074 REMARK 3 L13: -0.7634 L23: 0.7662 REMARK 3 S TENSOR REMARK 3 S11: -0.3863 S12: 0.0127 S13: -0.4236 REMARK 3 S21: 0.3963 S22: 0.1802 S23: 0.2405 REMARK 3 S31: 0.5632 S32: 0.1527 S33: 0.0134 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7012 5.1362 69.2258 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.1302 REMARK 3 T33: 0.0487 T12: 0.1876 REMARK 3 T13: 0.0825 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 1.1010 L22: 0.2262 REMARK 3 L33: 2.1841 L12: 0.1272 REMARK 3 L13: -0.5110 L23: 0.3323 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.0510 S13: 0.1066 REMARK 3 S21: -0.0243 S22: 0.0892 S23: 0.0315 REMARK 3 S31: 0.0190 S32: -0.1351 S33: 0.0231 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 350 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9170 10.6013 70.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.3804 REMARK 3 T33: 0.2684 T12: 0.1535 REMARK 3 T13: 0.0600 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.2396 L22: 3.9250 REMARK 3 L33: 3.2766 L12: 0.2786 REMARK 3 L13: 0.3345 L23: -2.7759 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.3238 S13: 0.2861 REMARK 3 S21: -0.0133 S22: 0.0541 S23: 0.2052 REMARK 3 S31: -0.2579 S32: -0.7765 S33: -0.0210 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 376 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9408 -6.2548 78.0803 REMARK 3 T TENSOR REMARK 3 T11: 0.5363 T22: 0.1242 REMARK 3 T33: -0.0049 T12: 0.1919 REMARK 3 T13: 0.1912 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.2447 L22: 0.4482 REMARK 3 L33: 1.7322 L12: -0.0355 REMARK 3 L13: -0.4339 L23: 0.7275 REMARK 3 S TENSOR REMARK 3 S11: -0.2517 S12: -0.1024 S13: -0.2205 REMARK 3 S21: -0.0171 S22: 0.0077 S23: -0.0784 REMARK 3 S31: 0.7022 S32: 0.2400 S33: 0.0410 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123931 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 39.017 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M MACL2, 10% REMARK 280 ISOPROPANOL, 30% EG, 18% PEG 3350, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.72050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.17850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.72050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.17850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 GLY A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 VAL A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 SER A 83 REMARK 465 HIS A 84 REMARK 465 MET A 85 REMARK 465 THR A 86 REMARK 465 GLN A 412 REMARK 465 SER A 413 REMARK 465 MET B 65 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 SER B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 HIS B 73 REMARK 465 HIS B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 GLY B 77 REMARK 465 LEU B 78 REMARK 465 VAL B 79 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 GLY B 82 REMARK 465 SER B 83 REMARK 465 HIS B 84 REMARK 465 MET B 85 REMARK 465 THR B 86 REMARK 465 GLU B 87 REMARK 465 GLN B 88 REMARK 465 GLN B 412 REMARK 465 SER B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 ARG A 342 NE CZ NH1 NH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 SER B 295 OG REMARK 470 GLN B 327 CG CD OE1 NE2 REMARK 470 ARG B 342 NE CZ NH1 NH2 REMARK 470 GLU B 349 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 226 O HOH B 601 2.04 REMARK 500 O HOH A 709 O HOH A 736 2.05 REMARK 500 O HOH B 744 O HOH B 781 2.15 REMARK 500 O HOH A 857 O HOH B 785 2.17 REMARK 500 O HOH B 680 O HOH B 739 2.19 REMARK 500 O HOH A 604 O HOH A 611 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 247 CB ASP A 247 CG 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 247 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 374 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 362 54.74 -141.78 REMARK 500 ILE A 376 -59.85 -125.21 REMARK 500 ILE A 376 -62.59 -122.95 REMARK 500 ASN B 161 -168.44 -127.25 REMARK 500 SER B 227 53.39 39.84 REMARK 500 ASN B 362 51.88 -145.63 REMARK 500 ILE B 376 -57.26 -121.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 869 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 O REMARK 620 2 TYR A 153 O 97.5 REMARK 620 3 HOH A 741 O 95.8 85.6 REMARK 620 4 ASP B 301 OD1 95.9 48.5 133.7 REMARK 620 5 HOH B 632 O 81.7 175.2 89.8 136.2 REMARK 620 6 HOH B 660 O 90.5 86.8 170.6 38.3 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 164 NE2 REMARK 620 2 HIS A 200 NE2 95.2 REMARK 620 3 ASP A 201 OD2 88.1 85.2 REMARK 620 4 ASP A 318 OD1 89.5 88.9 173.4 REMARK 620 5 HOH A 614 O 169.4 95.3 92.2 91.3 REMARK 620 6 HOH A 719 O 90.9 173.7 96.1 90.1 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD1 REMARK 620 2 HOH A 614 O 95.4 REMARK 620 3 HOH A 653 O 165.3 93.5 REMARK 620 4 HOH A 661 O 82.8 95.9 84.6 REMARK 620 5 HOH A 677 O 85.8 171.7 87.2 92.4 REMARK 620 6 HOH A 782 O 100.9 82.3 92.0 176.1 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 635 O REMARK 620 2 HOH A 657 O 101.8 REMARK 620 3 HOH A 824 O 87.6 88.3 REMARK 620 4 HOH A 855 O 169.7 86.4 86.3 REMARK 620 5 HOH B 619 O 92.3 90.2 178.4 94.0 REMARK 620 6 HOH B 700 O 94.3 163.6 89.2 77.2 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 164 NE2 REMARK 620 2 HIS B 200 NE2 96.0 REMARK 620 3 ASP B 201 OD2 87.9 84.3 REMARK 620 4 ASP B 318 OD1 89.1 89.9 173.1 REMARK 620 5 HOH B 616 O 168.4 95.5 91.5 92.7 REMARK 620 6 HOH B 696 O 89.9 173.8 97.8 88.4 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD1 REMARK 620 2 HOH B 616 O 94.5 REMARK 620 3 HOH B 636 O 83.1 97.4 REMARK 620 4 HOH B 650 O 166.9 93.4 85.5 REMARK 620 5 HOH B 669 O 87.0 170.9 91.7 86.9 REMARK 620 6 HOH B 737 O 99.9 81.2 176.8 91.6 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AH9 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AH9 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 DBREF 6IMD A 86 413 UNP Q08499 PDE4D_HUMAN 388 715 DBREF 6IMD B 86 413 UNP Q08499 PDE4D_HUMAN 388 715 SEQADV 6IMD MET A 65 UNP Q08499 EXPRESSION TAG SEQADV 6IMD GLY A 66 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER A 67 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER A 68 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 69 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 70 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 71 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 72 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 73 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 74 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER A 75 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER A 76 UNP Q08499 EXPRESSION TAG SEQADV 6IMD GLY A 77 UNP Q08499 EXPRESSION TAG SEQADV 6IMD LEU A 78 UNP Q08499 EXPRESSION TAG SEQADV 6IMD VAL A 79 UNP Q08499 EXPRESSION TAG SEQADV 6IMD PRO A 80 UNP Q08499 EXPRESSION TAG SEQADV 6IMD ARG A 81 UNP Q08499 EXPRESSION TAG SEQADV 6IMD GLY A 82 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER A 83 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS A 84 UNP Q08499 EXPRESSION TAG SEQADV 6IMD MET A 85 UNP Q08499 EXPRESSION TAG SEQADV 6IMD MET B 65 UNP Q08499 EXPRESSION TAG SEQADV 6IMD GLY B 66 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER B 67 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER B 68 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 69 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 70 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 71 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 72 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 73 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 74 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER B 75 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER B 76 UNP Q08499 EXPRESSION TAG SEQADV 6IMD GLY B 77 UNP Q08499 EXPRESSION TAG SEQADV 6IMD LEU B 78 UNP Q08499 EXPRESSION TAG SEQADV 6IMD VAL B 79 UNP Q08499 EXPRESSION TAG SEQADV 6IMD PRO B 80 UNP Q08499 EXPRESSION TAG SEQADV 6IMD ARG B 81 UNP Q08499 EXPRESSION TAG SEQADV 6IMD GLY B 82 UNP Q08499 EXPRESSION TAG SEQADV 6IMD SER B 83 UNP Q08499 EXPRESSION TAG SEQADV 6IMD HIS B 84 UNP Q08499 EXPRESSION TAG SEQADV 6IMD MET B 85 UNP Q08499 EXPRESSION TAG SEQRES 1 A 349 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 349 LEU VAL PRO ARG GLY SER HIS MET THR GLU GLN GLU ASP SEQRES 3 A 349 VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY SEQRES 4 A 349 LEU HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG SEQRES 5 A 349 PRO LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG SEQRES 6 A 349 ASP LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU SEQRES 7 A 349 ILE THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA SEQRES 8 A 349 ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL SEQRES 9 A 349 VAL GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU SEQRES 10 A 349 GLU ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE SEQRES 11 A 349 PHE ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SEQRES 12 A 349 SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA SEQRES 13 A 349 LEU MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS SEQRES 14 A 349 LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS SEQRES 15 A 349 ASP ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER SEQRES 16 A 349 LEU ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP SEQRES 17 A 349 MET SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR SEQRES 18 A 349 MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU SEQRES 19 A 349 LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN SEQRES 20 A 349 ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS SEQRES 21 A 349 PRO LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET SEQRES 22 A 349 GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG SEQRES 23 A 349 GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SEQRES 24 A 349 SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE SEQRES 25 A 349 VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS SEQRES 26 A 349 PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN SEQRES 27 A 349 ARG GLU TRP TYR GLN SER THR ILE PRO GLN SER SEQRES 1 B 349 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 349 LEU VAL PRO ARG GLY SER HIS MET THR GLU GLN GLU ASP SEQRES 3 B 349 VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY SEQRES 4 B 349 LEU HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG SEQRES 5 B 349 PRO LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG SEQRES 6 B 349 ASP LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU SEQRES 7 B 349 ILE THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA SEQRES 8 B 349 ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL SEQRES 9 B 349 VAL GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU SEQRES 10 B 349 GLU ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE SEQRES 11 B 349 PHE ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SEQRES 12 B 349 SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA SEQRES 13 B 349 LEU MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS SEQRES 14 B 349 LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS SEQRES 15 B 349 ASP ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER SEQRES 16 B 349 LEU ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP SEQRES 17 B 349 MET SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR SEQRES 18 B 349 MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU SEQRES 19 B 349 LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN SEQRES 20 B 349 ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS SEQRES 21 B 349 PRO LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET SEQRES 22 B 349 GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG SEQRES 23 B 349 GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SEQRES 24 B 349 SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE SEQRES 25 B 349 VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS SEQRES 26 B 349 PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN SEQRES 27 B 349 ARG GLU TRP TYR GLN SER THR ILE PRO GLN SER HET ZN A 501 1 HET MG A 502 1 HET MG A 503 1 HET MG A 504 1 HET AH9 A 505 16 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO B 501 4 HET ZN B 502 1 HET MG B 503 1 HET AH9 B 504 16 HET EDO B 505 4 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM AH9 6,7-DIMETHOXY-3,4-DIHYDROISOQUINOLINE-2(1H)- HETNAM 2 AH9 CARBALDEHYDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 4(MG 2+) FORMUL 7 AH9 2(C12 H15 N O3) FORMUL 8 EDO 11(C2 H6 O2) FORMUL 22 HOH *454(H2 O) HELIX 1 AA1 GLU A 87 GLU A 97 1 11 HELIX 2 AA2 HIS A 105 SER A 113 1 9 HELIX 3 AA3 ARG A 116 ARG A 129 1 14 HELIX 4 AA4 ASP A 130 LYS A 136 1 7 HELIX 5 AA5 PRO A 138 HIS A 152 1 15 HELIX 6 AA6 ASN A 161 SER A 177 1 17 HELIX 7 AA7 THR A 178 GLU A 182 5 5 HELIX 8 AA8 THR A 186 HIS A 200 1 15 HELIX 9 AA9 SER A 208 THR A 215 1 8 HELIX 10 AB1 SER A 217 ASN A 224 1 8 HELIX 11 AB2 SER A 227 LEU A 240 1 14 HELIX 12 AB3 LEU A 241 GLU A 243 5 3 HELIX 13 AB4 THR A 253 ALA A 270 1 18 HELIX 14 AB5 THR A 271 SER A 274 5 4 HELIX 15 AB6 LYS A 275 THR A 289 1 15 HELIX 16 AB7 ASN A 302 LEU A 319 1 18 HELIX 17 AB8 SER A 320 LYS A 324 5 5 HELIX 18 AB9 PRO A 325 ARG A 350 1 26 HELIX 19 AC1 SER A 364 ILE A 376 1 13 HELIX 20 AC2 ILE A 376 VAL A 388 1 13 HELIX 21 AC3 ALA A 392 THR A 409 1 18 HELIX 22 AC4 ASP B 90 GLU B 97 1 8 HELIX 23 AC5 HIS B 105 SER B 113 1 9 HELIX 24 AC6 ARG B 116 ARG B 129 1 14 HELIX 25 AC7 ASP B 130 LYS B 136 1 7 HELIX 26 AC8 PRO B 138 HIS B 152 1 15 HELIX 27 AC9 ASN B 161 SER B 177 1 17 HELIX 28 AD1 THR B 178 GLU B 182 5 5 HELIX 29 AD2 THR B 186 HIS B 200 1 15 HELIX 30 AD3 SER B 208 THR B 215 1 8 HELIX 31 AD4 SER B 217 ASN B 224 1 8 HELIX 32 AD5 SER B 227 LEU B 240 1 14 HELIX 33 AD6 LEU B 241 GLU B 243 5 3 HELIX 34 AD7 THR B 253 ALA B 270 1 18 HELIX 35 AD8 THR B 271 SER B 274 5 4 HELIX 36 AD9 LYS B 275 THR B 289 1 15 HELIX 37 AE1 ASN B 302 LEU B 319 1 18 HELIX 38 AE2 SER B 320 LYS B 324 5 5 HELIX 39 AE3 PRO B 325 ARG B 350 1 26 HELIX 40 AE4 SER B 364 ILE B 376 1 13 HELIX 41 AE5 ILE B 376 VAL B 388 1 13 HELIX 42 AE6 ALA B 392 THR B 409 1 18 LINK O ASP A 151 MG MG A 503 1555 1555 2.02 LINK O TYR A 153 MG MG A 503 1555 1555 2.14 LINK NE2 HIS A 164 ZN ZN A 501 1555 1555 2.16 LINK NE2 HIS A 200 ZN ZN A 501 1555 1555 2.18 LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 2.06 LINK OD1 ASP A 201 MG MG A 502 1555 1555 2.06 LINK OD1 ASP A 318 ZN ZN A 501 1555 1555 2.09 LINK ZN ZN A 501 O HOH A 614 1555 1555 2.12 LINK ZN ZN A 501 O HOH A 719 1555 1555 2.18 LINK MG MG A 502 O HOH A 614 1555 1555 2.09 LINK MG MG A 502 O HOH A 653 1555 1555 2.10 LINK MG MG A 502 O HOH A 661 1555 1555 2.15 LINK MG MG A 502 O HOH A 677 1555 1555 2.10 LINK MG MG A 502 O HOH A 782 1555 1555 2.06 LINK MG MG A 503 O HOH A 741 1555 1555 2.10 LINK MG MG A 503 OD1 ASP B 301 3645 1555 2.10 LINK MG MG A 503 O HOH B 632 1555 3655 2.05 LINK MG MG A 503 O HOH B 660 1555 3655 2.12 LINK MG MG A 504 O HOH A 635 1555 1555 2.03 LINK MG MG A 504 O HOH A 657 1555 1555 2.02 LINK MG MG A 504 O HOH A 824 1555 1555 2.13 LINK MG MG A 504 O HOH A 855 1555 1555 2.14 LINK MG MG A 504 O HOH B 619 1555 2554 2.12 LINK MG MG A 504 O HOH B 700 1555 2554 2.14 LINK NE2 HIS B 164 ZN ZN B 502 1555 1555 2.16 LINK NE2 HIS B 200 ZN ZN B 502 1555 1555 2.19 LINK OD2 ASP B 201 ZN ZN B 502 1555 1555 2.07 LINK OD1 ASP B 201 MG MG B 503 1555 1555 2.03 LINK OD1 ASP B 318 ZN ZN B 502 1555 1555 2.10 LINK ZN ZN B 502 O HOH B 616 1555 1555 2.12 LINK ZN ZN B 502 O HOH B 696 1555 1555 2.15 LINK MG MG B 503 O HOH B 616 1555 1555 2.05 LINK MG MG B 503 O HOH B 636 1555 1555 2.11 LINK MG MG B 503 O HOH B 650 1555 1555 2.13 LINK MG MG B 503 O HOH B 669 1555 1555 2.14 LINK MG MG B 503 O HOH B 737 1555 1555 2.05 CISPEP 1 HIS A 389 PRO A 390 0 4.97 CISPEP 2 HIS B 389 PRO B 390 0 2.99 SITE 1 AC1 6 HIS A 164 HIS A 200 ASP A 201 ASP A 318 SITE 2 AC1 6 HOH A 614 HOH A 719 SITE 1 AC2 6 ASP A 201 HOH A 614 HOH A 653 HOH A 661 SITE 2 AC2 6 HOH A 677 HOH A 782 SITE 1 AC3 6 ASP A 151 TYR A 153 HOH A 741 ASP B 301 SITE 2 AC3 6 HOH B 632 HOH B 660 SITE 1 AC4 6 HOH A 635 HOH A 657 HOH A 824 HOH A 855 SITE 2 AC4 6 HOH B 619 HOH B 700 SITE 1 AC5 7 HIS A 160 ASN A 321 ILE A 336 MET A 357 SITE 2 AC5 7 GLN A 369 PHE A 372 HOH A 700 SITE 1 AC6 3 SER A 208 PRO A 356 HOH A 783 SITE 1 AC7 4 HIS A 154 ASP A 156 VAL A 157 PRO A 205 SITE 1 AC8 4 ASN A 115 ALA A 155 ASN A 162 ILE A 163 SITE 1 AC9 3 GLN A 327 HOH A 686 TRP B 405 SITE 1 AD1 3 GLU A 366 TYR A 406 HOH A 681 SITE 1 AD2 4 THR A 134 LYS A 136 ASN A 251 GLN A 256 SITE 1 AD3 6 MET A 286 LYS A 290 LYS A 291 LEU A 299 SITE 2 AD3 6 LEU A 300 HOH A 682 SITE 1 AD4 4 LYS A 262 ILE A 265 ASP A 266 HOH A 644 SITE 1 AD5 4 ASP A 266 LEU A 269 LYS A 275 GLN A 311 SITE 1 AD6 6 ASN A 224 SER A 226 LYS B 262 ILE B 265 SITE 2 AD6 6 ASP B 266 HOH B 622 SITE 1 AD7 6 HIS B 164 HIS B 200 ASP B 201 ASP B 318 SITE 2 AD7 6 HOH B 616 HOH B 696 SITE 1 AD8 6 ASP B 201 HOH B 616 HOH B 636 HOH B 650 SITE 2 AD8 6 HOH B 669 HOH B 737 SITE 1 AD9 8 HIS B 160 ASN B 321 ILE B 336 MET B 357 SITE 2 AD9 8 GLN B 369 PHE B 372 HOH B 710 HOH B 773 SITE 1 AE1 4 SER B 208 PHE B 340 PRO B 356 HOH B 613 CRYST1 58.400 80.357 163.441 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006118 0.00000