HEADER DE NOVO PROTEIN 22-OCT-18 6IMG TITLE SOLUTION STRUCTURE OF BICYCLIC PEPTIDE PB-13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: (ACE)-GLY-CYS-PRO-CYS-ILE-TRP-PRO-GLU-LEU-CYS-PRO-TRP-ILE- COMPND 3 ARG-SER-CYS-(NH2); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE M13; SOURCE 4 ORGANISM_TAXID: 10870 KEYWDS BICYCLIC PEPTIDE, CYSTINE BRIDGE, PROLINE RICH, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.YAO,P.LIN,J.ZHA,M.ZHA,Y.ZHAO,C.WU REVDAT 1 28-AUG-19 6IMG 0 JRNL AUTH P.LIN,H.YAO,J.ZHA,Y.ZHAO,C.WU JRNL TITL ORDERED AND ISOMERICALLY STABLE BICYCLIC PEPTIDE SCAFFOLDS JRNL TITL 2 CONSTRAINED THROUGH CYSTINE BRIDGES AND PROLINE TURNS. JRNL REF CHEMBIOCHEM V. 20 1514 2019 JRNL REFN ESSN 1439-7633 JRNL PMID 30770638 JRNL DOI 10.1002/CBIC.201800788 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.48 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009464. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278; 278 REMARK 210 PH : 1.0; 1.0 REMARK 210 IONIC STRENGTH : 0; 0 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 4.3 MM PB-13, ACETONITRILE/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.48, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36213 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF BICYCLIC PEPTIDE PB-13 DBREF 6IMG A 1 18 PDB 6IMG 6IMG 1 18 SEQRES 1 A 18 ACE GLY CYS PRO CYS ILE TRP PRO GLU LEU CYS PRO TRP SEQRES 2 A 18 ILE ARG SER CYS NH2 HET ACE A 1 6 HET NH2 A 18 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 1 ACE C2 H4 O FORMUL 1 NH2 H2 N SSBOND 1 CYS A 3 CYS A 17 1555 1555 2.01 SSBOND 2 CYS A 5 CYS A 11 1555 1555 2.02 LINK C ACE A 1 N GLY A 2 1555 1555 1.33 LINK C CYS A 17 N NH2 A 18 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C ACE A 1 -5.401 7.411 -5.776 1.00 0.00 C HETATM 2 O ACE A 1 -5.166 6.379 -6.404 1.00 0.00 O HETATM 3 CH3 ACE A 1 -6.696 8.185 -6.001 1.00 0.00 C HETATM 4 H1 ACE A 1 -7.077 8.534 -5.053 1.00 0.00 H HETATM 5 H2 ACE A 1 -7.425 7.538 -6.465 1.00 0.00 H HETATM 6 H3 ACE A 1 -6.503 9.030 -6.645 1.00 0.00 H