HEADER IMMUNE SYSTEM 30-OCT-18 6IOE TITLE CRYSTAL STRUCTURE OF THE CYSR-CTLD2 FRAGMENT OF HUMAN MR AT BASIC PH TITLE 2 (PH 8.5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MANNOSE RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MMR,C-TYPE LECTIN DOMAIN FAMILY 13 MEMBER D,C-TYPE LECTIN COMPND 5 DOMAIN FAMILY 13 MEMBER D-LIKE,HUMAN MANNOSE RECEPTOR,HMR,MACROPHAGE COMPND 6 MANNOSE RECEPTOR 1-LIKE PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MRC1, CLEC13D, CLEC13DL, MRC1L1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS CD206, MANNOSE RECEPTOR FAMILY, PH-DEPENDENT, CONFORMATIONAL CHANGE, KEYWDS 2 SCAVENGER RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Z.HU,Y.HE REVDAT 4 22-NOV-23 6IOE 1 REMARK REVDAT 3 25-MAR-20 6IOE 1 JRNL REVDAT 2 11-DEC-19 6IOE 1 JRNL REVDAT 1 18-SEP-19 6IOE 0 JRNL AUTH Z.HU,Y.WANG,C.CHENG,Y.HE JRNL TITL STRUCTURAL BASIS OF THE PH-DEPENDENT CONFORMATIONAL CHANGE JRNL TITL 2 OF THE N-TERMINAL REGION OF HUMAN MANNOSE RECEPTOR/CD206. JRNL REF J.STRUCT.BIOL. V. 208 07384 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31491467 JRNL DOI 10.1016/J.JSB.2019.09.001 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 37307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.380 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8474 - 6.9584 0.97 2607 153 0.2217 0.2420 REMARK 3 2 6.9584 - 5.5346 0.99 2607 148 0.2389 0.2596 REMARK 3 3 5.5346 - 4.8384 0.99 2570 145 0.1979 0.2183 REMARK 3 4 4.8384 - 4.3975 0.99 2598 157 0.1895 0.2344 REMARK 3 5 4.3975 - 4.0831 0.99 2570 143 0.1935 0.2388 REMARK 3 6 4.0831 - 3.8429 0.99 2552 143 0.2158 0.3048 REMARK 3 7 3.8429 - 3.6508 0.98 2546 142 0.2303 0.3195 REMARK 3 8 3.6508 - 3.4922 0.98 2553 138 0.2521 0.3536 REMARK 3 9 3.4922 - 3.3579 0.98 2531 144 0.2722 0.3289 REMARK 3 10 3.3579 - 3.2422 0.98 2519 141 0.2852 0.3298 REMARK 3 11 3.2422 - 3.1409 0.98 2534 149 0.2932 0.3451 REMARK 3 12 3.1409 - 3.0512 0.95 2460 144 0.3097 0.3349 REMARK 3 13 3.0512 - 2.9710 0.92 2390 125 0.3244 0.3655 REMARK 3 14 2.9710 - 2.8985 0.88 2264 134 0.3586 0.4697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7465 REMARK 3 ANGLE : 1.222 10129 REMARK 3 CHIRALITY : 0.058 1035 REMARK 3 PLANARITY : 0.006 1278 REMARK 3 DIHEDRAL : 8.046 4333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL18U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1 M TRIS (PH 8.5), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 120.71250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 120.71250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 345 REMARK 465 THR A 346 REMARK 465 LEU A 347 REMARK 465 ASN A 348 REMARK 465 SER A 349 REMARK 465 PHE A 350 REMARK 465 VAL A 351 REMARK 465 ILE A 352 REMARK 465 PRO A 353 REMARK 465 SER A 354 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 ASP A 357 REMARK 465 VAL A 358 REMARK 465 PRO A 359 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 GLY B 343 REMARK 465 ASN B 344 REMARK 465 THR B 345 REMARK 465 THR B 346 REMARK 465 LEU B 347 REMARK 465 ASN B 348 REMARK 465 SER B 349 REMARK 465 PHE B 350 REMARK 465 VAL B 351 REMARK 465 ILE B 352 REMARK 465 PRO B 353 REMARK 465 SER B 354 REMARK 465 GLU B 355 REMARK 465 SER B 356 REMARK 465 ASP B 357 REMARK 465 VAL B 358 REMARK 465 PRO B 359 REMARK 465 GLU B 456 REMARK 465 ASN B 457 REMARK 465 ASN B 458 REMARK 465 ARG B 459 REMARK 465 GLN B 460 REMARK 465 GLU B 461 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 HIS B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 247 SG CYS B 340 1.56 REMARK 500 NZ LYS A 140 O ASP A 146 1.90 REMARK 500 OG1 THR A 239 O CYS A 332 2.06 REMARK 500 NZ LYS A 314 N CYS A 316 2.08 REMARK 500 ND2 ASN A 221 OH TYR A 265 2.11 REMARK 500 O ASP B 408 OG SER B 412 2.13 REMARK 500 OD1 ASP B 223 OG1 THR B 226 2.14 REMARK 500 NH1 ARG A 459 OD1 ASP A 462 2.18 REMARK 500 O GLY B 215 OG SER B 218 2.19 REMARK 500 NZ LYS A 140 C ASP A 146 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 479 NZ LYS B 375 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 80 CE LYS B 80 NZ 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 331 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 CYS A 486 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 LYS B 57 CD - CE - NZ ANGL. DEV. = -16.1 DEGREES REMARK 500 LEU B 108 CB - CG - CD1 ANGL. DEV. = -29.2 DEGREES REMARK 500 LEU B 108 CB - CG - CD2 ANGL. DEV. = 18.8 DEGREES REMARK 500 LYS B 375 CG - CD - CE ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 51.82 35.95 REMARK 500 GLN A 45 -152.94 -119.79 REMARK 500 ARG A 59 133.42 -171.18 REMARK 500 ASN A 104 -56.28 44.73 REMARK 500 ASP A 105 -88.27 -179.55 REMARK 500 PHE A 117 128.28 -39.57 REMARK 500 LYS A 125 82.84 -53.76 REMARK 500 ASN A 126 141.67 -172.44 REMARK 500 SER A 133 36.54 -88.54 REMARK 500 LYS A 140 142.67 -173.46 REMARK 500 ASN A 147 157.53 -43.22 REMARK 500 ARG A 151 49.15 -77.25 REMARK 500 LEU A 160 -137.24 63.57 REMARK 500 SER A 184 59.00 -111.06 REMARK 500 SER A 218 4.02 -64.37 REMARK 500 LEU A 225 -68.46 -90.40 REMARK 500 SER A 227 -3.53 85.74 REMARK 500 ALA A 237 83.92 -154.19 REMARK 500 ALA A 252 -155.55 -136.78 REMARK 500 THR A 274 -37.07 -133.88 REMARK 500 ARG A 295 15.89 59.52 REMARK 500 ASN A 302 51.66 -167.42 REMARK 500 SER A 315 -1.85 -143.11 REMARK 500 HIS A 361 122.59 65.95 REMARK 500 GLN A 365 -34.87 83.33 REMARK 500 ASN A 419 41.47 -97.65 REMARK 500 SER A 454 -135.22 -61.33 REMARK 500 GLU A 479 38.71 -88.03 REMARK 500 LYS B 33 60.89 31.59 REMARK 500 GLN B 45 -124.90 -134.57 REMARK 500 ASP B 105 -179.15 -63.33 REMARK 500 PHE B 117 125.00 -39.76 REMARK 500 ASN B 121 -123.00 63.46 REMARK 500 GLN B 123 47.39 70.21 REMARK 500 SER B 133 36.09 -90.01 REMARK 500 LYS B 140 146.35 -171.61 REMARK 500 THR B 145 10.75 -144.73 REMARK 500 ASN B 147 154.09 -47.37 REMARK 500 TYR B 153 132.80 62.60 REMARK 500 LEU B 160 -137.82 63.04 REMARK 500 SER B 184 65.30 -116.08 REMARK 500 SER B 227 -13.87 83.55 REMARK 500 ALA B 237 84.60 -154.06 REMARK 500 ALA B 252 -157.45 -135.57 REMARK 500 THR B 274 -36.12 -137.47 REMARK 500 ARG B 295 14.61 58.19 REMARK 500 ASN B 302 52.47 -167.76 REMARK 500 ASN B 324 59.27 37.84 REMARK 500 GLN B 365 -41.23 85.12 REMARK 500 ASN B 419 43.79 -101.94 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 103 ASN B 104 149.33 REMARK 500 LEU B 107 LEU B 108 143.40 REMARK 500 LEU B 115 PHE B 116 -149.89 REMARK 500 ARG B 450 GLY B 451 -114.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 6IOE A 22 490 UNP P22897 MRC1_HUMAN 22 490 DBREF 6IOE B 22 490 UNP P22897 MRC1_HUMAN 22 490 SEQADV 6IOE HIS A 491 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS A 492 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS A 493 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS A 494 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS A 495 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS A 496 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS B 491 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS B 492 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS B 493 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS B 494 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS B 495 UNP P22897 EXPRESSION TAG SEQADV 6IOE HIS B 496 UNP P22897 EXPRESSION TAG SEQRES 1 A 475 THR ARG GLN PHE LEU ILE TYR ASN GLU ASP HIS LYS ARG SEQRES 2 A 475 CYS VAL ASP ALA VAL SER PRO SER ALA VAL GLN THR ALA SEQRES 3 A 475 ALA CYS ASN GLN ASP ALA GLU SER GLN LYS PHE ARG TRP SEQRES 4 A 475 VAL SER GLU SER GLN ILE MET SER VAL ALA PHE LYS LEU SEQRES 5 A 475 CYS LEU GLY VAL PRO SER LYS THR ASP TRP VAL ALA ILE SEQRES 6 A 475 THR LEU TYR ALA CYS ASP SER LYS SER GLU PHE GLN LYS SEQRES 7 A 475 TRP GLU CYS LYS ASN ASP THR LEU LEU GLY ILE LYS GLY SEQRES 8 A 475 GLU ASP LEU PHE PHE ASN TYR GLY ASN ARG GLN GLU LYS SEQRES 9 A 475 ASN ILE MET LEU TYR LYS GLY SER GLY LEU TRP SER ARG SEQRES 10 A 475 TRP LYS ILE TYR GLY THR THR ASP ASN LEU CYS SER ARG SEQRES 11 A 475 GLY TYR GLU ALA MET TYR THR LEU LEU GLY ASN ALA ASN SEQRES 12 A 475 GLY ALA THR CYS ALA PHE PRO PHE LYS PHE GLU ASN LYS SEQRES 13 A 475 TRP TYR ALA ASP CYS THR SER ALA GLY ARG SER ASP GLY SEQRES 14 A 475 TRP LEU TRP CYS GLY THR THR THR ASP TYR ASP THR ASP SEQRES 15 A 475 LYS LEU PHE GLY TYR CYS PRO LEU LYS PHE GLU GLY SER SEQRES 16 A 475 GLU SER LEU TRP ASN LYS ASP PRO LEU THR SER VAL SER SEQRES 17 A 475 TYR GLN ILE ASN SER LYS SER ALA LEU THR TRP HIS GLN SEQRES 18 A 475 ALA ARG LYS SER CYS GLN GLN GLN ASN ALA GLU LEU LEU SEQRES 19 A 475 SER ILE THR GLU ILE HIS GLU GLN THR TYR LEU THR GLY SEQRES 20 A 475 LEU THR SER SER LEU THR SER GLY LEU TRP ILE GLY LEU SEQRES 21 A 475 ASN SER LEU SER PHE ASN SER GLY TRP GLN TRP SER ASP SEQRES 22 A 475 ARG SER PRO PHE ARG TYR LEU ASN TRP LEU PRO GLY SER SEQRES 23 A 475 PRO SER ALA GLU PRO GLY LYS SER CYS VAL SER LEU ASN SEQRES 24 A 475 PRO GLY LYS ASN ALA LYS TRP GLU ASN LEU GLU CYS VAL SEQRES 25 A 475 GLN LYS LEU GLY TYR ILE CYS LYS LYS GLY ASN THR THR SEQRES 26 A 475 LEU ASN SER PHE VAL ILE PRO SER GLU SER ASP VAL PRO SEQRES 27 A 475 THR HIS CYS PRO SER GLN TRP TRP PRO TYR ALA GLY HIS SEQRES 28 A 475 CYS TYR LYS ILE HIS ARG ASP GLU LYS LYS ILE GLN ARG SEQRES 29 A 475 ASP ALA LEU THR THR CYS ARG LYS GLU GLY GLY ASP LEU SEQRES 30 A 475 THR SER ILE HIS THR ILE GLU GLU LEU ASP PHE ILE ILE SEQRES 31 A 475 SER GLN LEU GLY TYR GLU PRO ASN ASP GLU LEU TRP ILE SEQRES 32 A 475 GLY LEU ASN ASP ILE LYS ILE GLN MET TYR PHE GLU TRP SEQRES 33 A 475 SER ASP GLY THR PRO VAL THR PHE THR LYS TRP LEU ARG SEQRES 34 A 475 GLY GLU PRO SER HIS GLU ASN ASN ARG GLN GLU ASP CYS SEQRES 35 A 475 VAL VAL MET LYS GLY LYS ASP GLY TYR TRP ALA ASP ARG SEQRES 36 A 475 GLY CYS GLU TRP PRO LEU GLY TYR ILE CYS LYS MET LYS SEQRES 37 A 475 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 475 THR ARG GLN PHE LEU ILE TYR ASN GLU ASP HIS LYS ARG SEQRES 2 B 475 CYS VAL ASP ALA VAL SER PRO SER ALA VAL GLN THR ALA SEQRES 3 B 475 ALA CYS ASN GLN ASP ALA GLU SER GLN LYS PHE ARG TRP SEQRES 4 B 475 VAL SER GLU SER GLN ILE MET SER VAL ALA PHE LYS LEU SEQRES 5 B 475 CYS LEU GLY VAL PRO SER LYS THR ASP TRP VAL ALA ILE SEQRES 6 B 475 THR LEU TYR ALA CYS ASP SER LYS SER GLU PHE GLN LYS SEQRES 7 B 475 TRP GLU CYS LYS ASN ASP THR LEU LEU GLY ILE LYS GLY SEQRES 8 B 475 GLU ASP LEU PHE PHE ASN TYR GLY ASN ARG GLN GLU LYS SEQRES 9 B 475 ASN ILE MET LEU TYR LYS GLY SER GLY LEU TRP SER ARG SEQRES 10 B 475 TRP LYS ILE TYR GLY THR THR ASP ASN LEU CYS SER ARG SEQRES 11 B 475 GLY TYR GLU ALA MET TYR THR LEU LEU GLY ASN ALA ASN SEQRES 12 B 475 GLY ALA THR CYS ALA PHE PRO PHE LYS PHE GLU ASN LYS SEQRES 13 B 475 TRP TYR ALA ASP CYS THR SER ALA GLY ARG SER ASP GLY SEQRES 14 B 475 TRP LEU TRP CYS GLY THR THR THR ASP TYR ASP THR ASP SEQRES 15 B 475 LYS LEU PHE GLY TYR CYS PRO LEU LYS PHE GLU GLY SER SEQRES 16 B 475 GLU SER LEU TRP ASN LYS ASP PRO LEU THR SER VAL SER SEQRES 17 B 475 TYR GLN ILE ASN SER LYS SER ALA LEU THR TRP HIS GLN SEQRES 18 B 475 ALA ARG LYS SER CYS GLN GLN GLN ASN ALA GLU LEU LEU SEQRES 19 B 475 SER ILE THR GLU ILE HIS GLU GLN THR TYR LEU THR GLY SEQRES 20 B 475 LEU THR SER SER LEU THR SER GLY LEU TRP ILE GLY LEU SEQRES 21 B 475 ASN SER LEU SER PHE ASN SER GLY TRP GLN TRP SER ASP SEQRES 22 B 475 ARG SER PRO PHE ARG TYR LEU ASN TRP LEU PRO GLY SER SEQRES 23 B 475 PRO SER ALA GLU PRO GLY LYS SER CYS VAL SER LEU ASN SEQRES 24 B 475 PRO GLY LYS ASN ALA LYS TRP GLU ASN LEU GLU CYS VAL SEQRES 25 B 475 GLN LYS LEU GLY TYR ILE CYS LYS LYS GLY ASN THR THR SEQRES 26 B 475 LEU ASN SER PHE VAL ILE PRO SER GLU SER ASP VAL PRO SEQRES 27 B 475 THR HIS CYS PRO SER GLN TRP TRP PRO TYR ALA GLY HIS SEQRES 28 B 475 CYS TYR LYS ILE HIS ARG ASP GLU LYS LYS ILE GLN ARG SEQRES 29 B 475 ASP ALA LEU THR THR CYS ARG LYS GLU GLY GLY ASP LEU SEQRES 30 B 475 THR SER ILE HIS THR ILE GLU GLU LEU ASP PHE ILE ILE SEQRES 31 B 475 SER GLN LEU GLY TYR GLU PRO ASN ASP GLU LEU TRP ILE SEQRES 32 B 475 GLY LEU ASN ASP ILE LYS ILE GLN MET TYR PHE GLU TRP SEQRES 33 B 475 SER ASP GLY THR PRO VAL THR PHE THR LYS TRP LEU ARG SEQRES 34 B 475 GLY GLU PRO SER HIS GLU ASN ASN ARG GLN GLU ASP CYS SEQRES 35 B 475 VAL VAL MET LYS GLY LYS ASP GLY TYR TRP ALA ASP ARG SEQRES 36 B 475 GLY CYS GLU TRP PRO LEU GLY TYR ILE CYS LYS MET LYS SEQRES 37 B 475 SER HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ALA A 53 SER A 55 5 3 HELIX 2 AA2 GLY A 134 ARG A 138 5 5 HELIX 3 AA3 ASP A 199 LYS A 204 1 6 HELIX 4 AA4 SER A 216 TRP A 220 5 5 HELIX 5 AA5 THR A 239 GLN A 249 1 11 HELIX 6 AA6 GLU A 259 THR A 270 1 12 HELIX 7 AA7 PRO A 321 ASN A 324 5 4 HELIX 8 AA8 ILE A 383 LYS A 393 1 11 HELIX 9 AA9 THR A 403 LEU A 414 1 12 HELIX 10 AB1 ALA B 53 SER B 55 5 3 HELIX 11 AB2 ASP B 199 LYS B 204 1 6 HELIX 12 AB3 GLY B 215 TRP B 220 5 6 HELIX 13 AB4 THR B 239 GLN B 249 1 11 HELIX 14 AB5 GLU B 259 THR B 270 1 12 HELIX 15 AB6 PRO B 321 ASN B 324 5 4 HELIX 16 AB7 ILE B 383 LYS B 393 1 11 HELIX 17 AB8 THR B 403 LEU B 414 1 12 SHEET 1 AA1 7 VAL A 44 ALA A 47 0 SHEET 2 AA1 7 ARG A 34 ALA A 38 -1 N ASP A 37 O GLN A 45 SHEET 3 AA1 7 PHE A 25 ASN A 29 -1 N ILE A 27 O VAL A 36 SHEET 4 AA1 7 LYS A 57 TRP A 60 -1 O PHE A 58 N PHE A 25 SHEET 5 AA1 7 ILE A 66 SER A 68 -1 O MET A 67 N ARG A 59 SHEET 6 AA1 7 LEU A 73 GLY A 76 -1 O LEU A 75 N ILE A 66 SHEET 7 AA1 7 THR A 87 TYR A 89 -1 O TYR A 89 N CYS A 74 SHEET 1 AA2 4 VAL A 44 ALA A 47 0 SHEET 2 AA2 4 ARG A 34 ALA A 38 -1 N ASP A 37 O GLN A 45 SHEET 3 AA2 4 PHE A 25 ASN A 29 -1 N ILE A 27 O VAL A 36 SHEET 4 AA2 4 LYS A 140 ILE A 141 -1 O LYS A 140 N TYR A 28 SHEET 1 AA3 3 VAL A 84 ALA A 85 0 SHEET 2 AA3 3 MET A 128 TYR A 130 -1 O LEU A 129 N VAL A 84 SHEET 3 AA3 3 PHE A 116 ASN A 118 -1 N PHE A 116 O TYR A 130 SHEET 1 AA4 2 TRP A 100 LYS A 103 0 SHEET 2 AA4 2 LEU A 107 ILE A 110 -1 O GLY A 109 N GLU A 101 SHEET 1 AA5 2 PHE A 172 PHE A 174 0 SHEET 2 AA5 2 LYS A 177 TYR A 179 -1 O LYS A 177 N PHE A 174 SHEET 1 AA6 2 TRP A 193 GLY A 195 0 SHEET 2 AA6 2 PHE A 206 TYR A 208 -1 O GLY A 207 N CYS A 194 SHEET 1 AA7 5 ASN A 221 LYS A 222 0 SHEET 2 AA7 5 SER A 229 LEU A 238 -1 O TYR A 230 N ASN A 221 SHEET 3 AA7 5 LEU A 336 LYS A 342 -1 O TYR A 338 N ASN A 233 SHEET 4 AA7 5 LEU A 277 ASN A 282 1 N TRP A 278 O GLY A 337 SHEET 5 AA7 5 GLN A 291 TRP A 292 -1 O GLN A 291 N ASN A 282 SHEET 1 AA8 6 ASN A 221 LYS A 222 0 SHEET 2 AA8 6 SER A 229 LEU A 238 -1 O TYR A 230 N ASN A 221 SHEET 3 AA8 6 LEU A 336 LYS A 342 -1 O TYR A 338 N ASN A 233 SHEET 4 AA8 6 LEU A 277 ASN A 282 1 N TRP A 278 O GLY A 337 SHEET 5 AA8 6 CYS A 316 ASN A 320 -1 O LEU A 319 N LEU A 277 SHEET 6 AA8 6 LYS A 326 ASN A 329 -1 O GLU A 328 N SER A 318 SHEET 1 AA9 5 TRP A 367 TYR A 369 0 SHEET 2 AA9 5 HIS A 372 LYS A 382 -1 O HIS A 372 N TYR A 369 SHEET 3 AA9 5 LEU A 482 LYS A 489 -1 O TYR A 484 N HIS A 377 SHEET 4 AA9 5 GLU A 421 ASN A 427 1 N TRP A 423 O GLY A 483 SHEET 5 AA9 5 GLU A 436 TRP A 437 -1 O GLU A 436 N ASN A 427 SHEET 1 AB1 5 ASP A 397 LEU A 398 0 SHEET 2 AB1 5 LEU A 482 LYS A 489 -1 O LYS A 487 N ASP A 397 SHEET 3 AB1 5 GLU A 421 ASN A 427 1 N TRP A 423 O GLY A 483 SHEET 4 AB1 5 CYS A 463 LYS A 467 -1 O MET A 466 N LEU A 422 SHEET 5 AB1 5 TYR A 472 ARG A 476 -1 O ALA A 474 N VAL A 465 SHEET 1 AB2 5 PHE B 25 LEU B 26 0 SHEET 2 AB2 5 LYS B 57 TRP B 60 -1 O PHE B 58 N PHE B 25 SHEET 3 AB2 5 ILE B 66 SER B 68 -1 O MET B 67 N ARG B 59 SHEET 4 AB2 5 LEU B 73 GLY B 76 -1 O LEU B 75 N ILE B 66 SHEET 5 AB2 5 THR B 87 TYR B 89 -1 O TYR B 89 N CYS B 74 SHEET 1 AB3 2 CYS B 35 ALA B 38 0 SHEET 2 AB3 2 VAL B 44 ALA B 47 -1 O GLN B 45 N ASP B 37 SHEET 1 AB4 2 TRP B 100 GLU B 101 0 SHEET 2 AB4 2 GLY B 109 ILE B 110 -1 O GLY B 109 N GLU B 101 SHEET 1 AB5 2 PHE B 116 ASN B 118 0 SHEET 2 AB5 2 MET B 128 TYR B 130 -1 O TYR B 130 N PHE B 116 SHEET 1 AB6 2 PHE B 172 PHE B 174 0 SHEET 2 AB6 2 LYS B 177 TYR B 179 -1 O LYS B 177 N PHE B 174 SHEET 1 AB7 2 TRP B 193 GLY B 195 0 SHEET 2 AB7 2 PHE B 206 TYR B 208 -1 O GLY B 207 N CYS B 194 SHEET 1 AB8 5 ASN B 221 LYS B 222 0 SHEET 2 AB8 5 SER B 229 LEU B 238 -1 O TYR B 230 N ASN B 221 SHEET 3 AB8 5 LEU B 336 LYS B 342 -1 O TYR B 338 N ASN B 233 SHEET 4 AB8 5 LEU B 277 ASN B 282 1 N TRP B 278 O GLY B 337 SHEET 5 AB8 5 GLN B 291 TRP B 292 -1 O GLN B 291 N ASN B 282 SHEET 1 AB9 6 ASN B 221 LYS B 222 0 SHEET 2 AB9 6 SER B 229 LEU B 238 -1 O TYR B 230 N ASN B 221 SHEET 3 AB9 6 LEU B 336 LYS B 342 -1 O TYR B 338 N ASN B 233 SHEET 4 AB9 6 LEU B 277 ASN B 282 1 N TRP B 278 O GLY B 337 SHEET 5 AB9 6 CYS B 316 LEU B 319 -1 O LEU B 319 N LEU B 277 SHEET 6 AB9 6 TRP B 327 LEU B 330 -1 O LEU B 330 N CYS B 316 SHEET 1 AC1 5 TRP B 367 TYR B 369 0 SHEET 2 AC1 5 HIS B 372 LYS B 382 -1 O HIS B 372 N TYR B 369 SHEET 3 AC1 5 LEU B 482 LYS B 489 -1 O TYR B 484 N HIS B 377 SHEET 4 AC1 5 GLU B 421 ASN B 427 1 N TRP B 423 O GLY B 483 SHEET 5 AC1 5 GLU B 436 TRP B 437 -1 O GLU B 436 N ASN B 427 SHEET 1 AC2 5 ASP B 397 LEU B 398 0 SHEET 2 AC2 5 LEU B 482 LYS B 489 -1 O LYS B 487 N ASP B 397 SHEET 3 AC2 5 GLU B 421 ASN B 427 1 N TRP B 423 O GLY B 483 SHEET 4 AC2 5 CYS B 463 LYS B 467 -1 O MET B 466 N LEU B 422 SHEET 5 AC2 5 TRP B 473 ARG B 476 -1 O ALA B 474 N VAL B 465 SSBOND 1 CYS A 35 CYS A 49 1555 1555 2.03 SSBOND 2 CYS A 74 CYS A 91 1555 1555 2.03 SSBOND 3 CYS A 102 CYS A 149 1555 1555 2.03 SSBOND 4 CYS A 168 CYS A 194 1555 1555 2.03 SSBOND 5 CYS A 182 CYS A 209 1555 1555 2.03 SSBOND 6 CYS A 247 CYS A 340 1555 1555 2.04 SSBOND 7 CYS A 316 CYS A 332 1555 1555 2.03 SSBOND 8 CYS A 362 CYS A 373 1555 1555 2.03 SSBOND 9 CYS A 391 CYS A 486 1555 1555 2.56 SSBOND 10 CYS A 463 CYS A 478 1555 1555 2.03 SSBOND 11 CYS B 35 CYS B 49 1555 1555 1.93 SSBOND 12 CYS B 74 CYS B 91 1555 1555 2.04 SSBOND 13 CYS B 102 CYS B 149 1555 1555 2.03 SSBOND 14 CYS B 168 CYS B 194 1555 1555 2.02 SSBOND 15 CYS B 182 CYS B 209 1555 1555 2.03 SSBOND 16 CYS B 316 CYS B 332 1555 1555 2.04 SSBOND 17 CYS B 362 CYS B 373 1555 1555 1.99 SSBOND 18 CYS B 391 CYS B 486 1555 1555 2.05 SSBOND 19 CYS B 463 CYS B 478 1555 1555 2.02 CISPEP 1 PHE A 170 PRO A 171 0 -5.93 CISPEP 2 SER A 307 PRO A 308 0 1.94 CISPEP 3 GLU A 452 PRO A 453 0 3.32 CISPEP 4 PHE B 170 PRO B 171 0 -5.77 CISPEP 5 SER B 307 PRO B 308 0 1.53 CISPEP 6 GLU B 452 PRO B 453 0 0.76 CRYST1 241.425 72.240 109.529 90.00 114.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004142 0.000000 0.001889 0.00000 SCALE2 0.000000 0.013843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010034 0.00000