HEADER PROTEIN BINDING 08-NOV-18 6IQT TITLE CRYSTAL STRUCTURE OF CAGV, A VIRB8 HOMOLOG OF T4SS FROM HELICOBACTER TITLE 2 PYLORI STRAIN 26695 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAG PATHOGENICITY ISLAND PROTEIN (CAG10); COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 74-229; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI 26695; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: 26695; SOURCE 6 GENE: HP_0530; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS HELICOBACTER PYLORI; CAG PATHOGENICITY ISLAND; TYPE IV SECRETION KEYWDS 2 SYSTEM; VIRB8; CAGV; CRYSTAL STRUCTURE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.WU,Y.ZHAO,L.SUN,M.JIANG,Q.WANG,Q.WANG,W.YANG,Y.WU REVDAT 3 29-APR-20 6IQT 1 REMARK REVDAT 2 15-JAN-20 6IQT 1 JRNL REVDAT 1 13-NOV-19 6IQT 0 JRNL AUTH X.WU,Y.ZHAO,L.SUN,M.JIANG,Q.WANG,Q.WANG,W.YANG,Y.WU JRNL TITL CRYSTAL STRUCTURE OF CAGV, THE HELICOBACTER PYLORI HOMOLOGUE JRNL TITL 2 OF THE T4SS PROTEIN VIRB8. JRNL REF FEBS J. V. 286 4294 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31230405 JRNL DOI 10.1111/FEBS.14971 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 48899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5905 - 4.9408 0.99 2958 157 0.1930 0.2041 REMARK 3 2 4.9408 - 3.9222 1.00 2877 127 0.1565 0.1688 REMARK 3 3 3.9222 - 3.4265 1.00 2812 162 0.1673 0.1738 REMARK 3 4 3.4265 - 3.1133 1.00 2807 129 0.1816 0.2280 REMARK 3 5 3.1133 - 2.8902 1.00 2823 133 0.1915 0.2306 REMARK 3 6 2.8902 - 2.7198 1.00 2788 127 0.1930 0.2114 REMARK 3 7 2.7198 - 2.5836 1.00 2773 157 0.1903 0.2304 REMARK 3 8 2.5836 - 2.4711 1.00 2775 132 0.1916 0.1999 REMARK 3 9 2.4711 - 2.3760 1.00 2758 163 0.1870 0.2312 REMARK 3 10 2.3760 - 2.2940 1.00 2760 153 0.1908 0.2581 REMARK 3 11 2.2940 - 2.2223 1.00 2732 162 0.1883 0.2400 REMARK 3 12 2.2223 - 2.1587 1.00 2741 137 0.1931 0.2338 REMARK 3 13 2.1587 - 2.1019 1.00 2748 143 0.1981 0.2473 REMARK 3 14 2.1019 - 2.0506 1.00 2779 123 0.2071 0.2514 REMARK 3 15 2.0506 - 2.0040 1.00 2789 127 0.2142 0.2820 REMARK 3 16 2.0040 - 1.9614 1.00 2747 124 0.2259 0.2532 REMARK 3 17 1.9614 - 1.9221 0.69 1886 90 0.2521 0.3453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4422 REMARK 3 ANGLE : 0.860 5953 REMARK 3 CHIRALITY : 0.058 682 REMARK 3 PLANARITY : 0.005 753 REMARK 3 DIHEDRAL : 3.143 2703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 30.1712 7.7428 -11.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.1947 REMARK 3 T33: 0.2156 T12: -0.0183 REMARK 3 T13: 0.0144 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.2885 L22: 0.2807 REMARK 3 L33: 0.6851 L12: -0.1068 REMARK 3 L13: -0.2657 L23: 0.1816 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.0084 S13: -0.0312 REMARK 3 S21: -0.0084 S22: 0.0178 S23: 0.0410 REMARK 3 S31: 0.0226 S32: -0.0291 S33: 0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AICHISR REMARK 200 BEAMLINE : BL2S1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.922 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 2.09200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DIAMON REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG2000MME(V/V), 0.3M REMARK 280 TRIMETHYMALINE N-OXIDEDEHYDRATE, 0.1M TRIS-HCL PH 8.5 BUFFER, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.51300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.57400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.42550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.57400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.51300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.42550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 64 REMARK 465 THR A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 MSE A 68 REMARK 465 ALA A 69 REMARK 465 ASP A 70 REMARK 465 ILE A 71 REMARK 465 GLY A 72 REMARK 465 SER A 73 REMARK 465 GLY A 74 REMARK 465 GLU A 75 REMARK 465 PHE A 76 REMARK 465 LYS A 77 REMARK 465 ILE A 78 REMARK 465 VAL A 79 REMARK 465 LYS A 80 REMARK 465 ARG A 81 REMARK 465 SER A 82 REMARK 465 ASP A 83 REMARK 465 ALA A 84 REMARK 465 ARG A 85 REMARK 465 ARG A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 ASN A 229 REMARK 465 GLY B 64 REMARK 465 THR B 65 REMARK 465 SER B 66 REMARK 465 SER B 67 REMARK 465 MSE B 68 REMARK 465 ALA B 69 REMARK 465 ASP B 70 REMARK 465 ILE B 71 REMARK 465 GLY B 72 REMARK 465 SER B 73 REMARK 465 GLY B 74 REMARK 465 GLU B 75 REMARK 465 PHE B 76 REMARK 465 LYS B 77 REMARK 465 ILE B 78 REMARK 465 VAL B 79 REMARK 465 LYS B 80 REMARK 465 ARG B 81 REMARK 465 SER B 82 REMARK 465 ASP B 83 REMARK 465 ALA B 84 REMARK 465 ARG B 85 REMARK 465 GLN B 86 REMARK 465 ILE B 87 REMARK 465 VAL B 88 REMARK 465 ASN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 ARG B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 204 REMARK 465 SER B 205 REMARK 465 SER B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 ASN B 209 REMARK 465 ASN B 229 REMARK 465 GLY C 64 REMARK 465 THR C 65 REMARK 465 SER C 66 REMARK 465 SER C 67 REMARK 465 MSE C 68 REMARK 465 ALA C 69 REMARK 465 ASP C 70 REMARK 465 ILE C 71 REMARK 465 GLY C 72 REMARK 465 SER C 73 REMARK 465 GLY C 74 REMARK 465 GLU C 75 REMARK 465 PHE C 76 REMARK 465 LYS C 77 REMARK 465 ILE C 78 REMARK 465 VAL C 79 REMARK 465 LYS C 80 REMARK 465 ARG C 81 REMARK 465 SER C 82 REMARK 465 ASP C 83 REMARK 465 ALA C 84 REMARK 465 ARG C 85 REMARK 465 GLN C 86 REMARK 465 ILE C 87 REMARK 465 VAL C 88 REMARK 465 ASN C 89 REMARK 465 SER C 90 REMARK 465 ARG C 202 REMARK 465 GLY C 203 REMARK 465 ASN C 204 REMARK 465 SER C 205 REMARK 465 SER C 206 REMARK 465 GLN C 207 REMARK 465 GLU C 208 REMARK 465 ASN C 209 REMARK 465 ASN C 229 REMARK 465 GLY D 64 REMARK 465 THR D 65 REMARK 465 SER D 66 REMARK 465 SER D 67 REMARK 465 MSE D 68 REMARK 465 ALA D 69 REMARK 465 ASP D 70 REMARK 465 ILE D 71 REMARK 465 GLY D 72 REMARK 465 SER D 73 REMARK 465 GLY D 74 REMARK 465 GLU D 75 REMARK 465 PHE D 76 REMARK 465 LYS D 77 REMARK 465 ILE D 78 REMARK 465 VAL D 79 REMARK 465 LYS D 80 REMARK 465 ARG D 81 REMARK 465 SER D 82 REMARK 465 ASP D 83 REMARK 465 ALA D 84 REMARK 465 ARG D 85 REMARK 465 GLN D 86 REMARK 465 ILE D 87 REMARK 465 ARG D 202 REMARK 465 GLY D 203 REMARK 465 ASN D 204 REMARK 465 SER D 205 REMARK 465 SER D 206 REMARK 465 GLN D 207 REMARK 465 GLU D 208 REMARK 465 ASN D 209 REMARK 465 ASN D 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 369 O HOH A 375 1.96 REMARK 500 OD1 ASP C 118 O HOH C 301 1.96 REMARK 500 O HOH B 357 O HOH B 366 1.99 REMARK 500 O HOH A 376 O HOH A 378 1.99 REMARK 500 OE1 GLU B 138 O HOH B 301 2.06 REMARK 500 O HOH D 335 O HOH D 377 2.07 REMARK 500 OD1 ASP D 118 O HOH D 301 2.07 REMARK 500 OD1 ASN A 156 O HOH A 301 2.11 REMARK 500 O HOH D 302 O HOH D 387 2.11 REMARK 500 N LEU D 210 O HOH D 302 2.12 REMARK 500 NH1 ARG A 148 O HOH A 302 2.12 REMARK 500 O HOH C 309 O HOH C 360 2.13 REMARK 500 O ALA B 201 O HOH B 302 2.17 REMARK 500 O HOH D 352 O HOH D 369 2.18 REMARK 500 N GLU C 91 O HOH C 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLN A 86 O ASP D 145 4455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 -59.13 151.62 REMARK 500 VAL A 144 -134.66 36.88 REMARK 500 THR A 182 54.92 -96.94 REMARK 500 MSE A 183 -126.35 -166.14 REMARK 500 GLU A 184 -22.85 -169.40 REMARK 500 ASN A 185 62.34 -167.63 REMARK 500 ILE A 212 -47.48 -132.44 REMARK 500 ASP B 145 -125.75 64.84 REMARK 500 VAL C 144 -87.80 59.92 REMARK 500 ASP C 145 -82.18 -145.18 REMARK 500 LYS C 146 77.48 -100.34 REMARK 500 ASN C 185 -150.28 -175.80 REMARK 500 GLU C 187 80.23 -150.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 378 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH C 367 DISTANCE = 6.23 ANGSTROMS DBREF 6IQT A 74 229 UNP O25265 O25265_HELPY 74 229 DBREF 6IQT B 74 229 UNP O25265 O25265_HELPY 74 229 DBREF 6IQT C 74 229 UNP O25265 O25265_HELPY 74 229 DBREF 6IQT D 74 229 UNP O25265 O25265_HELPY 74 229 SEQADV 6IQT GLY A 64 UNP O25265 EXPRESSION TAG SEQADV 6IQT THR A 65 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER A 66 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER A 67 UNP O25265 EXPRESSION TAG SEQADV 6IQT MSE A 68 UNP O25265 EXPRESSION TAG SEQADV 6IQT ALA A 69 UNP O25265 EXPRESSION TAG SEQADV 6IQT ASP A 70 UNP O25265 EXPRESSION TAG SEQADV 6IQT ILE A 71 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY A 72 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER A 73 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY B 64 UNP O25265 EXPRESSION TAG SEQADV 6IQT THR B 65 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER B 66 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER B 67 UNP O25265 EXPRESSION TAG SEQADV 6IQT MSE B 68 UNP O25265 EXPRESSION TAG SEQADV 6IQT ALA B 69 UNP O25265 EXPRESSION TAG SEQADV 6IQT ASP B 70 UNP O25265 EXPRESSION TAG SEQADV 6IQT ILE B 71 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY B 72 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER B 73 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY C 64 UNP O25265 EXPRESSION TAG SEQADV 6IQT THR C 65 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER C 66 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER C 67 UNP O25265 EXPRESSION TAG SEQADV 6IQT MSE C 68 UNP O25265 EXPRESSION TAG SEQADV 6IQT ALA C 69 UNP O25265 EXPRESSION TAG SEQADV 6IQT ASP C 70 UNP O25265 EXPRESSION TAG SEQADV 6IQT ILE C 71 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY C 72 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER C 73 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY D 64 UNP O25265 EXPRESSION TAG SEQADV 6IQT THR D 65 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER D 66 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER D 67 UNP O25265 EXPRESSION TAG SEQADV 6IQT MSE D 68 UNP O25265 EXPRESSION TAG SEQADV 6IQT ALA D 69 UNP O25265 EXPRESSION TAG SEQADV 6IQT ASP D 70 UNP O25265 EXPRESSION TAG SEQADV 6IQT ILE D 71 UNP O25265 EXPRESSION TAG SEQADV 6IQT GLY D 72 UNP O25265 EXPRESSION TAG SEQADV 6IQT SER D 73 UNP O25265 EXPRESSION TAG SEQRES 1 A 166 GLY THR SER SER MSE ALA ASP ILE GLY SER GLY GLU PHE SEQRES 2 A 166 LYS ILE VAL LYS ARG SER ASP ALA ARG GLN ILE VAL ASN SEQRES 3 A 166 SER GLU ALA VAL VAL ASP SER ALA THR SER LYS PHE VAL SEQRES 4 A 166 SER LEU LEU PHE GLY TYR SER LYS ASN SER LEU ARG ASP SEQRES 5 A 166 ARG LYS ASP GLN LEU MSE GLN TYR CYS ASP VAL SER PHE SEQRES 6 A 166 GLN THR GLN ALA MSE ARG MSE PHE ASN GLU ASN ILE ARG SEQRES 7 A 166 GLN PHE VAL ASP LYS VAL ARG ALA GLU ALA ILE ILE SER SEQRES 8 A 166 SER ASN ILE GLN ARG GLU LYS VAL LYS ASN SER PRO LEU SEQRES 9 A 166 THR ARG LEU THR PHE PHE ILE THR ILE LYS ILE THR PRO SEQRES 10 A 166 ASP THR MSE GLU ASN TYR GLU TYR ILE THR LYS LYS GLN SEQRES 11 A 166 VAL THR ILE TYR TYR ASP PHE ALA ARG GLY ASN SER SER SEQRES 12 A 166 GLN GLU ASN LEU ILE ILE ASN PRO PHE GLY PHE LYS VAL SEQRES 13 A 166 PHE ASP ILE GLN ILE THR ASP LEU GLN ASN SEQRES 1 B 166 GLY THR SER SER MSE ALA ASP ILE GLY SER GLY GLU PHE SEQRES 2 B 166 LYS ILE VAL LYS ARG SER ASP ALA ARG GLN ILE VAL ASN SEQRES 3 B 166 SER GLU ALA VAL VAL ASP SER ALA THR SER LYS PHE VAL SEQRES 4 B 166 SER LEU LEU PHE GLY TYR SER LYS ASN SER LEU ARG ASP SEQRES 5 B 166 ARG LYS ASP GLN LEU MSE GLN TYR CYS ASP VAL SER PHE SEQRES 6 B 166 GLN THR GLN ALA MSE ARG MSE PHE ASN GLU ASN ILE ARG SEQRES 7 B 166 GLN PHE VAL ASP LYS VAL ARG ALA GLU ALA ILE ILE SER SEQRES 8 B 166 SER ASN ILE GLN ARG GLU LYS VAL LYS ASN SER PRO LEU SEQRES 9 B 166 THR ARG LEU THR PHE PHE ILE THR ILE LYS ILE THR PRO SEQRES 10 B 166 ASP THR MSE GLU ASN TYR GLU TYR ILE THR LYS LYS GLN SEQRES 11 B 166 VAL THR ILE TYR TYR ASP PHE ALA ARG GLY ASN SER SER SEQRES 12 B 166 GLN GLU ASN LEU ILE ILE ASN PRO PHE GLY PHE LYS VAL SEQRES 13 B 166 PHE ASP ILE GLN ILE THR ASP LEU GLN ASN SEQRES 1 C 166 GLY THR SER SER MSE ALA ASP ILE GLY SER GLY GLU PHE SEQRES 2 C 166 LYS ILE VAL LYS ARG SER ASP ALA ARG GLN ILE VAL ASN SEQRES 3 C 166 SER GLU ALA VAL VAL ASP SER ALA THR SER LYS PHE VAL SEQRES 4 C 166 SER LEU LEU PHE GLY TYR SER LYS ASN SER LEU ARG ASP SEQRES 5 C 166 ARG LYS ASP GLN LEU MSE GLN TYR CYS ASP VAL SER PHE SEQRES 6 C 166 GLN THR GLN ALA MSE ARG MSE PHE ASN GLU ASN ILE ARG SEQRES 7 C 166 GLN PHE VAL ASP LYS VAL ARG ALA GLU ALA ILE ILE SER SEQRES 8 C 166 SER ASN ILE GLN ARG GLU LYS VAL LYS ASN SER PRO LEU SEQRES 9 C 166 THR ARG LEU THR PHE PHE ILE THR ILE LYS ILE THR PRO SEQRES 10 C 166 ASP THR MSE GLU ASN TYR GLU TYR ILE THR LYS LYS GLN SEQRES 11 C 166 VAL THR ILE TYR TYR ASP PHE ALA ARG GLY ASN SER SER SEQRES 12 C 166 GLN GLU ASN LEU ILE ILE ASN PRO PHE GLY PHE LYS VAL SEQRES 13 C 166 PHE ASP ILE GLN ILE THR ASP LEU GLN ASN SEQRES 1 D 166 GLY THR SER SER MSE ALA ASP ILE GLY SER GLY GLU PHE SEQRES 2 D 166 LYS ILE VAL LYS ARG SER ASP ALA ARG GLN ILE VAL ASN SEQRES 3 D 166 SER GLU ALA VAL VAL ASP SER ALA THR SER LYS PHE VAL SEQRES 4 D 166 SER LEU LEU PHE GLY TYR SER LYS ASN SER LEU ARG ASP SEQRES 5 D 166 ARG LYS ASP GLN LEU MSE GLN TYR CYS ASP VAL SER PHE SEQRES 6 D 166 GLN THR GLN ALA MSE ARG MSE PHE ASN GLU ASN ILE ARG SEQRES 7 D 166 GLN PHE VAL ASP LYS VAL ARG ALA GLU ALA ILE ILE SER SEQRES 8 D 166 SER ASN ILE GLN ARG GLU LYS VAL LYS ASN SER PRO LEU SEQRES 9 D 166 THR ARG LEU THR PHE PHE ILE THR ILE LYS ILE THR PRO SEQRES 10 D 166 ASP THR MSE GLU ASN TYR GLU TYR ILE THR LYS LYS GLN SEQRES 11 D 166 VAL THR ILE TYR TYR ASP PHE ALA ARG GLY ASN SER SER SEQRES 12 D 166 GLN GLU ASN LEU ILE ILE ASN PRO PHE GLY PHE LYS VAL SEQRES 13 D 166 PHE ASP ILE GLN ILE THR ASP LEU GLN ASN MODRES 6IQT MSE A 121 MET MODIFIED RESIDUE MODRES 6IQT MSE A 133 MET MODIFIED RESIDUE MODRES 6IQT MSE A 135 MET MODIFIED RESIDUE MODRES 6IQT MSE A 183 MET MODIFIED RESIDUE MODRES 6IQT MSE B 121 MET MODIFIED RESIDUE MODRES 6IQT MSE B 133 MET MODIFIED RESIDUE MODRES 6IQT MSE B 135 MET MODIFIED RESIDUE MODRES 6IQT MSE B 183 MET MODIFIED RESIDUE MODRES 6IQT MSE C 121 MET MODIFIED RESIDUE MODRES 6IQT MSE C 133 MET MODIFIED RESIDUE MODRES 6IQT MSE C 135 MET MODIFIED RESIDUE MODRES 6IQT MSE C 183 MET MODIFIED RESIDUE MODRES 6IQT MSE D 121 MET MODIFIED RESIDUE MODRES 6IQT MSE D 133 MET MODIFIED RESIDUE MODRES 6IQT MSE D 135 MET MODIFIED RESIDUE MODRES 6IQT MSE D 183 MET MODIFIED RESIDUE HET MSE A 121 8 HET MSE A 133 8 HET MSE A 135 8 HET MSE A 183 8 HET MSE B 121 8 HET MSE B 133 8 HET MSE B 135 8 HET MSE B 183 8 HET MSE C 121 8 HET MSE C 133 8 HET MSE C 135 8 HET MSE C 183 8 HET MSE D 121 8 HET MSE D 133 8 HET MSE D 135 8 HET MSE D 183 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *319(H2 O) HELIX 1 AA1 ALA A 92 GLY A 107 1 16 HELIX 2 AA2 SER A 112 TYR A 123 1 12 HELIX 3 AA3 CYS A 124 SER A 127 5 4 HELIX 4 AA4 PHE A 128 VAL A 144 1 17 HELIX 5 AA5 VAL B 93 GLY B 107 1 15 HELIX 6 AA6 SER B 112 TYR B 123 1 12 HELIX 7 AA7 ASP B 125 ILE B 140 1 16 HELIX 8 AA8 ARG B 141 PHE B 143 5 3 HELIX 9 AA9 ALA C 92 GLY C 107 1 16 HELIX 10 AB1 SER C 112 TYR C 123 1 12 HELIX 11 AB2 CYS C 124 SER C 127 5 4 HELIX 12 AB3 PHE C 128 ARG C 141 1 14 HELIX 13 AB4 SER D 90 GLY D 107 1 18 HELIX 14 AB5 SER D 112 TYR D 123 1 12 HELIX 15 AB6 ASP D 125 ARG D 141 1 17 SHEET 1 AA1 3 VAL A 147 ILE A 153 0 SHEET 2 AA1 3 THR A 168 PRO A 180 -1 O LYS A 177 N GLU A 150 SHEET 3 AA1 3 GLN A 158 LYS A 161 -1 N GLU A 160 O ARG A 169 SHEET 1 AA2 4 VAL A 147 ILE A 153 0 SHEET 2 AA2 4 THR A 168 PRO A 180 -1 O LYS A 177 N GLU A 150 SHEET 3 AA2 4 TYR A 188 PHE A 200 -1 O VAL A 194 N PHE A 172 SHEET 4 AA2 4 PHE A 217 ASP A 226 -1 O PHE A 220 N TYR A 197 SHEET 1 AA3 6 GLN B 158 LYS B 161 0 SHEET 2 AA3 6 THR B 168 PRO B 180 -1 O ARG B 169 N GLU B 160 SHEET 3 AA3 6 GLU B 187 PHE B 200 -1 O VAL B 194 N PHE B 172 SHEET 4 AA3 6 GLU D 187 PHE D 200 -1 O ILE D 189 N GLU B 187 SHEET 5 AA3 6 THR D 168 PRO D 180 -1 N ILE D 178 O TYR D 188 SHEET 6 AA3 6 VAL D 147 ILE D 153 -1 N GLU D 150 O LYS D 177 SHEET 1 AA4 4 GLN D 158 LYS D 161 0 SHEET 2 AA4 4 THR D 168 PRO D 180 -1 O ARG D 169 N GLU D 160 SHEET 3 AA4 4 GLU D 187 PHE D 200 -1 O TYR D 188 N ILE D 178 SHEET 4 AA4 4 PHE D 217 ASP D 226 -1 O PHE D 220 N TYR D 197 SHEET 1 AA5 4 PHE B 217 ASP B 226 0 SHEET 2 AA5 4 GLU B 187 PHE B 200 -1 N TYR B 197 O PHE B 220 SHEET 3 AA5 4 THR B 168 PRO B 180 -1 N PHE B 172 O VAL B 194 SHEET 4 AA5 4 VAL B 147 ILE B 153 -1 N GLU B 150 O LYS B 177 SHEET 1 AA6 3 VAL C 147 ILE C 153 0 SHEET 2 AA6 3 THR C 168 PRO C 180 -1 O THR C 179 N ARG C 148 SHEET 3 AA6 3 GLN C 158 LYS C 161 -1 N GLU C 160 O ARG C 169 SHEET 1 AA7 4 VAL C 147 ILE C 153 0 SHEET 2 AA7 4 THR C 168 PRO C 180 -1 O THR C 179 N ARG C 148 SHEET 3 AA7 4 TYR C 188 PHE C 200 -1 O THR C 190 N ILE C 176 SHEET 4 AA7 4 PHE C 217 ASP C 226 -1 O PHE C 220 N TYR C 197 LINK C LEU A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N GLN A 122 1555 1555 1.34 LINK C ALA A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N ARG A 134 1555 1555 1.34 LINK C ARG A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N PHE A 136 1555 1555 1.33 LINK C THR A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N GLU A 184 1555 1555 1.33 LINK C LEU B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N GLN B 122 1555 1555 1.33 LINK C ALA B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N ARG B 134 1555 1555 1.33 LINK C ARG B 134 N MSE B 135 1555 1555 1.32 LINK C MSE B 135 N PHE B 136 1555 1555 1.33 LINK C THR B 182 N MSE B 183 1555 1555 1.33 LINK C MSE B 183 N GLU B 184 1555 1555 1.33 LINK C LEU C 120 N MSE C 121 1555 1555 1.33 LINK C MSE C 121 N GLN C 122 1555 1555 1.34 LINK C ALA C 132 N MSE C 133 1555 1555 1.33 LINK C MSE C 133 N ARG C 134 1555 1555 1.34 LINK C ARG C 134 N MSE C 135 1555 1555 1.33 LINK C MSE C 135 N PHE C 136 1555 1555 1.33 LINK C THR C 182 N MSE C 183 1555 1555 1.33 LINK C MSE C 183 N GLU C 184 1555 1555 1.33 LINK C LEU D 120 N MSE D 121 1555 1555 1.33 LINK C MSE D 121 N GLN D 122 1555 1555 1.34 LINK C ALA D 132 N MSE D 133 1555 1555 1.33 LINK C MSE D 133 N ARG D 134 1555 1555 1.33 LINK C ARG D 134 N MSE D 135 1555 1555 1.33 LINK C MSE D 135 N PHE D 136 1555 1555 1.33 LINK C THR D 182 N MSE D 183 1555 1555 1.33 LINK C MSE D 183 N GLU D 184 1555 1555 1.33 CRYST1 67.026 96.851 99.148 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010086 0.00000