HEADER MEMBRANE PROTEIN 23-NOV-18 6ITH TITLE STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF SYNDECAN 2 IN MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNDECAN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SYND2,FIBROGLYCAN,HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN, COMPND 5 HSPG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SDC2, HSPG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS MEMBRANE PROTEIN, DPC, MICELLES EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Q.LI,H.Q.NG,C.KANG REVDAT 3 14-JUN-23 6ITH 1 REMARK REVDAT 2 27-MAR-19 6ITH 1 JRNL REVDAT 1 27-FEB-19 6ITH 0 JRNL AUTH Q.LI,H.Q.NG,C.KANG JRNL TITL SECONDARY STRUCTURE AND TOPOLOGY OF THE TRANSMEMBRANE DOMAIN JRNL TITL 2 OF SYNDECAN-2 IN DETERGENT MICELLES. JRNL REF FEBS LETT. V. 593 554 2019 JRNL REFN ISSN 1873-3468 JRNL PMID 30742705 JRNL DOI 10.1002/1873-3468.13335 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ITH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300009906. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 5 % W/V REMARK 210 DPC, 1 MM DTT, 0.5 MM [U-100% REMARK 210 13C; U-100% 15N] SCN2, 90% H2O/ REMARK 210 10% D2O; 20 MM SODIUM PHOSPHATE, REMARK 210 5 % DPC, 1 MM DTT, 0.5 MM [U-99% REMARK 210 15N] SCN2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 3D HNCACB; 2D 1H-15N REMARK 210 HSQC; 3D HNCO; HNCOCACB; 3D REMARK 210 HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 3.97, AUREMOL, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 SER A 4 72.69 51.88 REMARK 500 4 GLU A 2 69.67 -117.39 REMARK 500 4 SER A 4 81.23 53.30 REMARK 500 5 GLN A 3 -170.19 55.18 REMARK 500 6 GLU A 2 62.33 -117.43 REMARK 500 7 GLU A 2 -74.83 -129.96 REMARK 500 7 GLN A 3 -169.69 65.61 REMARK 500 8 GLU A 2 40.35 -101.01 REMARK 500 10 SER A 4 33.14 -153.51 REMARK 500 11 GLU A 2 82.93 58.67 REMARK 500 12 SER A 4 71.70 51.99 REMARK 500 13 GLU A 2 -75.09 -130.48 REMARK 500 13 GLN A 3 -179.13 57.56 REMARK 500 14 GLU A 2 -75.20 -106.03 REMARK 500 14 GLN A 3 -178.26 58.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36219 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF SYNDECAN 2 IN MICELLES DBREF 6ITH A 5 35 UNP P34741 SDC2_HUMAN 143 173 SEQADV 6ITH MET A 1 UNP P34741 INITIATING METHIONINE SEQADV 6ITH GLU A 2 UNP P34741 EXPRESSION TAG SEQADV 6ITH GLN A 3 UNP P34741 EXPRESSION TAG SEQADV 6ITH SER A 4 UNP P34741 EXPRESSION TAG SEQADV 6ITH HIS A 36 UNP P34741 EXPRESSION TAG SEQADV 6ITH HIS A 37 UNP P34741 EXPRESSION TAG SEQADV 6ITH HIS A 38 UNP P34741 EXPRESSION TAG SEQADV 6ITH HIS A 39 UNP P34741 EXPRESSION TAG SEQADV 6ITH HIS A 40 UNP P34741 EXPRESSION TAG SEQADV 6ITH HIS A 41 UNP P34741 EXPRESSION TAG SEQRES 1 A 41 MET GLU GLN SER THR GLU VAL LEU ALA ALA VAL ILE ALA SEQRES 2 A 41 GLY GLY VAL ILE GLY PHE LEU PHE ALA ILE PHE LEU ILE SEQRES 3 A 41 LEU LEU LEU VAL TYR ARG MET ARG LYS HIS HIS HIS HIS SEQRES 4 A 41 HIS HIS HELIX 1 AA1 SER A 4 ARG A 34 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1