HEADER VIRAL PROTEIN/IMMUNE SYSTEM 04-DEC-18 6IVZ TITLE CRYSTAL STRUCTURE OF 5A SCFV COMPLEXED WITH YFV-CHINA SE IN POSTFUSION TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF MONOCLONAL ANTIBODY 5A; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF MONOCLONAL ANTIBODY 5A; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YELLOW FEVER VIRUS; SOURCE 3 ORGANISM_TAXID: 11089; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YELLOW FEVER VIRUS, NEUTRALIZING MONOCLONAL ANTIBODY, ENVELOPE KEYWDS 2 PROTEIN, FLAVIVIRUS, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.S.LU,H.X.XIAO,S.H.LI,X.F.PANG REVDAT 2 27-FEB-19 6IVZ 1 REMARK REVDAT 1 13-FEB-19 6IVZ 0 JRNL AUTH X.LU,H.XIAO,S.LI,X.PANG,J.SONG,S.LIU,H.CHENG,Y.LI,X.WANG, JRNL AUTH 2 C.HUANG,T.GUO,J.TER MEULEN,S.DAFFIS,J.YAN,L.DAI,Z.RAO, JRNL AUTH 3 H.D.KLENK,J.QI,Y.SHI,G.F.GAO JRNL TITL DOUBLE LOCK OF A HUMAN NEUTRALIZING AND PROTECTIVE JRNL TITL 2 MONOCLONAL ANTIBODY TARGETING THE YELLOW FEVER VIRUS JRNL TITL 3 ENVELOPE. JRNL REF CELL REP V. 26 438 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 30625326 JRNL DOI 10.1016/J.CELREP.2018.12.065 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 25919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3998 - 5.1683 1.00 2980 159 0.1797 0.1999 REMARK 3 2 5.1683 - 4.1029 1.00 2849 148 0.1532 0.1978 REMARK 3 3 4.1029 - 3.5845 1.00 2833 156 0.1882 0.2401 REMARK 3 4 3.5845 - 3.2569 1.00 2802 150 0.2227 0.2773 REMARK 3 5 3.2569 - 3.0235 1.00 2813 136 0.2474 0.2863 REMARK 3 6 3.0235 - 2.8452 1.00 2790 152 0.2579 0.3292 REMARK 3 7 2.8452 - 2.7028 1.00 2759 162 0.2766 0.3221 REMARK 3 8 2.7028 - 2.5851 0.86 2413 117 0.2907 0.3698 REMARK 3 9 2.5851 - 2.4856 0.51 1413 91 0.2990 0.3279 REMARK 3 10 2.4856 - 2.3998 0.34 934 62 0.2755 0.3301 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4859 REMARK 3 ANGLE : 0.850 6590 REMARK 3 CHIRALITY : 0.037 738 REMARK 3 PLANARITY : 0.003 842 REMARK 3 DIHEDRAL : 14.416 1745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -13.0197 -51.5442 6.6375 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.1208 REMARK 3 T33: 0.1064 T12: 0.0082 REMARK 3 T13: 0.0240 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.0826 L22: 0.2051 REMARK 3 L33: 0.2397 L12: -0.0064 REMARK 3 L13: 0.0579 L23: -0.3144 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.0221 S13: 0.0454 REMARK 3 S21: 0.0307 S22: 0.0292 S23: 0.1046 REMARK 3 S31: -0.0662 S32: -0.0752 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): -1.8603 -26.1846 -52.3541 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.2660 REMARK 3 T33: 0.2673 T12: -0.0403 REMARK 3 T13: 0.0138 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 0.1396 L22: 0.0486 REMARK 3 L33: 0.1023 L12: 0.0211 REMARK 3 L13: 0.1060 L23: 0.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.1794 S13: 0.1368 REMARK 3 S21: -0.3217 S22: -0.0527 S23: -0.0410 REMARK 3 S31: -0.2277 S32: 0.3187 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): -5.2233 -17.4148 -33.0771 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.1580 REMARK 3 T33: 0.4507 T12: 0.0411 REMARK 3 T13: -0.0791 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.1624 L22: 0.0589 REMARK 3 L33: 0.3119 L12: -0.0089 REMARK 3 L13: -0.1641 L23: -0.0574 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.0503 S13: 0.4836 REMARK 3 S21: 0.0750 S22: 0.0413 S23: 0.0727 REMARK 3 S31: -0.3104 S32: 0.0680 S33: 0.0190 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 4.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.45750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.70900 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 121.62467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.45750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.70900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 121.62467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.45750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.70900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 121.62467 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.45750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.70900 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 121.62467 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.45750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.70900 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.62467 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.45750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.70900 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 121.62467 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.41800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 243.24933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 59.41800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 243.24933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 59.41800 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 243.24933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 59.41800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 243.24933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 59.41800 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 243.24933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 59.41800 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 243.24933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -51.45750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.12700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.45750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -89.12700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 505 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 217 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 393 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 465 MET H 1 REMARK 465 VAL L -22 REMARK 465 SER L -21 REMARK 465 SER L -20 REMARK 465 GLY L -19 REMARK 465 GLY L -18 REMARK 465 GLY L -17 REMARK 465 GLY L -16 REMARK 465 SER L -15 REMARK 465 GLY L -14 REMARK 465 GLY L -13 REMARK 465 GLY L -12 REMARK 465 GLY L -11 REMARK 465 SER L -10 REMARK 465 GLY L -9 REMARK 465 GLY L -8 REMARK 465 GLY L -7 REMARK 465 GLY L -6 REMARK 465 SER L -5 REMARK 465 GLY L -4 REMARK 465 GLY L -3 REMARK 465 GLY L -2 REMARK 465 GLY L -1 REMARK 465 SER L 0 REMARK 465 GLN L 1 REMARK 465 ARG L 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 101 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 101 CH2 REMARK 470 THR A 380 CG2 REMARK 470 THR H 76 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 502 1.81 REMARK 500 O HOH A 500 O HOH H 220 2.02 REMARK 500 O HOH A 457 O HOH L 218 2.03 REMARK 500 NZ LYS A 29 O HOH A 401 2.03 REMARK 500 OE1 GLN A 132 O HOH A 402 2.04 REMARK 500 O HOH H 221 O HOH H 225 2.05 REMARK 500 OD1 ASP A 162 O HOH A 403 2.08 REMARK 500 OG1 THR A 66 O HOH A 404 2.09 REMARK 500 O GLU A 129 O HOH A 405 2.10 REMARK 500 O ALA A 246 O HOH A 406 2.14 REMARK 500 O TYR H 31 O HOH H 201 2.15 REMARK 500 O HOH A 490 O HOH A 502 2.16 REMARK 500 O HOH H 211 O HOH H 224 2.18 REMARK 500 OG SER A 126 O HOH A 407 2.19 REMARK 500 NZ LYS A 38 O HOH A 408 2.19 REMARK 500 O VAL A 130 O HOH A 409 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 303 OE2 GLU L 81 5445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 103 46.46 -141.76 REMARK 500 SER A 165 69.12 -102.46 REMARK 500 GLU A 199 -118.42 49.82 REMARK 500 ALA A 239 -112.84 56.11 REMARK 500 HIS A 315 57.78 -93.93 REMARK 500 ALA A 328 -153.98 78.45 REMARK 500 THR A 341 -78.37 -82.34 REMARK 500 ASN A 353 81.21 53.21 REMARK 500 PRO A 354 96.04 -69.59 REMARK 500 SER H 16 -4.10 66.12 REMARK 500 HIS H 33 167.48 70.52 REMARK 500 THR H 87 -168.64 -128.42 REMARK 500 SER H 110 -137.05 54.84 REMARK 500 ALA L 51 -47.56 67.93 REMARK 500 TYR L 91 44.85 -143.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 508 DISTANCE = 6.13 ANGSTROMS DBREF 6IVZ A 1 395 UNP Q89292 Q89292_9FLAV 1 395 DBREF 6IVZ H 1 121 PDB 6IVZ 6IVZ 1 121 DBREF 6IVZ L -22 108 PDB 6IVZ 6IVZ -22 108 SEQRES 1 A 395 ALA HIS CYS ILE GLY ILE THR ASP ARG ASP PHE ILE GLU SEQRES 2 A 395 GLY VAL HIS GLY GLY THR TRP VAL SER ALA THR LEU GLU SEQRES 3 A 395 GLN ASP LYS CYS VAL THR VAL MET ALA PRO ASP LYS PRO SEQRES 4 A 395 SER LEU ASP ILE SER LEU GLN THR VAL ALA ILE ASP GLY SEQRES 5 A 395 PRO ALA GLU ALA ARG LYS VAL CYS TYR SER ALA VAL LEU SEQRES 6 A 395 THR HIS VAL LYS ILE ASN ASP LYS CYS PRO SER THR GLY SEQRES 7 A 395 GLU ALA HIS LEU ALA GLU GLU ASN ASP GLY ASP ASN ALA SEQRES 8 A 395 CYS LYS ARG THR TYR SER ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 395 CYS GLY LEU PHE GLY LYS GLY SER ILE VAL ALA CYS ALA SEQRES 10 A 395 LYS PHE THR CYS ALA LYS SER MET SER LEU PHE GLU VAL SEQRES 11 A 395 ASP GLN THR LYS ILE GLN TYR VAL ILE ARG ALA GLN LEU SEQRES 12 A 395 HIS VAL GLY ALA LYS GLN GLU ASN TRP ASN THR ASP ILE SEQRES 13 A 395 LYS THR LEU LYS PHE ASP ALA LEU SER GLY SER GLN GLU SEQRES 14 A 395 ALA GLU PHE THR GLY TYR GLY LYS ALA THR LEU GLU CYS SEQRES 15 A 395 GLN VAL GLN THR ALA VAL ASP PHE GLY ASN SER TYR ILE SEQRES 16 A 395 ALA GLU MET GLU LYS ASP SER TRP ILE VAL ASP ARG GLN SEQRES 17 A 395 TRP ALA GLN ASP LEU THR LEU PRO TRP GLN SER GLY SER SEQRES 18 A 395 GLY GLY ILE TRP ARG GLU MET HIS HIS LEU VAL GLU PHE SEQRES 19 A 395 GLU PRO PRO HIS ALA ALA THR ILE ARG VAL LEU ALA LEU SEQRES 20 A 395 GLY ASN GLN GLU GLY SER LEU LYS THR ALA LEU THR GLY SEQRES 21 A 395 ALA MET ARG VAL THR LYS ASP GLU ASN ASP ASN ASN LEU SEQRES 22 A 395 TYR LYS LEU HIS GLY GLY HIS VAL SER CYS ARG VAL LYS SEQRES 23 A 395 LEU SER ALA LEU THR LEU LYS GLY THR SER TYR LYS MET SEQRES 24 A 395 CYS THR ASP LYS MET SER PHE VAL LYS ASN PRO THR ASP SEQRES 25 A 395 THR GLY HIS GLY THR VAL VAL MET GLN VAL LYS VAL PRO SEQRES 26 A 395 LYS GLY ALA PRO CYS LYS ILE PRO VAL ILE VAL ALA ASP SEQRES 27 A 395 ASP LEU THR ALA ALA VAL ASN LYS GLY ILE LEU VAL THR SEQRES 28 A 395 VAL ASN PRO ILE ALA SER THR ASN ASP ASP GLU VAL LEU SEQRES 29 A 395 ILE GLU VAL ASN PRO PRO PHE GLY ASP SER TYR ILE ILE SEQRES 30 A 395 VAL GLY THR GLY ASP SER ARG LEU THR TYR GLN TRP HIS SEQRES 31 A 395 LYS GLU GLY SER SER SEQRES 1 H 121 MET GLU VAL GLN LEU VAL GLU SER GLY PRO ARG LEU VAL SEQRES 2 H 121 LYS PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER SEQRES 3 H 121 GLY GLY SER THR TYR ASN HIS HIS TRP SER TRP ILE ARG SEQRES 4 H 121 GLN PRO PRO GLY ARG GLY LEU GLU TRP ILE GLY TYR ILE SEQRES 5 H 121 SER TYR SER GLY LYS SER ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 121 SER ARG VAL THR ILE SER LEU GLU PRO SER THR THR GLN SEQRES 7 H 121 PHE SER LEU LYS LEU ASN SER LEU THR ALA ALA ASP THR SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG GLU TYR ARG ASP ASP THR SEQRES 9 H 121 ASN TYR TYR TYR TYR SER LEU ASP VAL TRP GLY PRO GLY SEQRES 10 H 121 THR MET VAL THR SEQRES 1 L 131 VAL SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 2 L 131 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLN ILE VAL SEQRES 3 L 131 MET THR GLN SER PRO SER THR LEU SER ALA SER VAL GLY SEQRES 4 L 131 ASP ARG VAL THR ILE THR CYS ARG ALA SER GLN SER ILE SEQRES 5 L 131 GLY SER TRP LEU ALA TRP TYR GLN GLN LYS PRO GLY LYS SEQRES 6 L 131 ALA PRO LYS LEU LEU ILE TYR LYS ALA SER SER LEU GLU SEQRES 7 L 131 SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SER GLY SEQRES 8 L 131 THR GLU PHE THR LEU THR ILE SER SER LEU GLN PRO GLU SEQRES 9 L 131 ASP PHE ALA THR TYR TYR CYS GLN GLN TYR ASN ASN TYR SEQRES 10 L 131 SER TYR THR PHE GLY PRO GLY THR LYS LEU GLU ILE LYS SEQRES 11 L 131 ARG FORMUL 4 HOH *155(H2 O) HELIX 1 AA1 THR A 7 ARG A 9 5 3 HELIX 2 AA2 LEU A 82 ASP A 87 5 6 HELIX 3 AA3 GLY A 100 GLY A 104 5 5 HELIX 4 AA4 ASP A 131 LYS A 134 5 4 HELIX 5 AA5 ASP A 189 GLY A 191 5 3 HELIX 6 AA6 ARG A 207 ASP A 212 1 6 HELIX 7 AA7 GLU A 227 HIS A 230 5 4 HELIX 8 AA8 GLN A 250 LEU A 258 1 9 HELIX 9 AA9 THR A 259 ALA A 261 5 3 HELIX 10 AB1 GLN L 79 PHE L 83 5 5 SHEET 1 AA1 5 ILE A 4 GLY A 5 0 SHEET 2 AA1 5 CYS A 30 VAL A 33 1 O CYS A 30 N ILE A 4 SHEET 3 AA1 5 LEU A 41 ASP A 51 -1 O ILE A 43 N VAL A 31 SHEET 4 AA1 5 GLN A 136 LEU A 143 -1 O GLN A 136 N ALA A 49 SHEET 5 AA1 5 LYS A 157 ASP A 162 -1 O LEU A 159 N ILE A 139 SHEET 1 AA2 5 ILE A 4 GLY A 5 0 SHEET 2 AA2 5 CYS A 30 VAL A 33 1 O CYS A 30 N ILE A 4 SHEET 3 AA2 5 LEU A 41 ASP A 51 -1 O ILE A 43 N VAL A 31 SHEET 4 AA2 5 LEU A 273 LYS A 275 -1 O TYR A 274 N ILE A 50 SHEET 5 AA2 5 THR A 265 LYS A 266 -1 N THR A 265 O LYS A 275 SHEET 1 AA3 5 PHE A 11 GLU A 13 0 SHEET 2 AA3 5 GLY A 18 GLU A 26 -1 O TRP A 20 N ILE A 12 SHEET 3 AA3 5 HIS A 280 SER A 288 -1 O CYS A 283 N ALA A 23 SHEET 4 AA3 5 GLY A 176 GLN A 185 -1 N GLN A 185 O HIS A 280 SHEET 5 AA3 5 SER A 167 PHE A 172 -1 N ALA A 170 O ALA A 178 SHEET 1 AA4 5 ASN A 90 ARG A 99 0 SHEET 2 AA4 5 GLY A 109 GLU A 129 -1 O GLY A 109 N ARG A 99 SHEET 3 AA4 5 ALA A 54 ASP A 72 -1 N VAL A 59 O MET A 125 SHEET 4 AA4 5 TRP A 217 SER A 219 -1 O GLN A 218 N LYS A 58 SHEET 5 AA4 5 GLY A 222 ARG A 226 -1 O ARG A 226 N TRP A 217 SHEET 1 AA5 5 ASN A 90 ARG A 99 0 SHEET 2 AA5 5 GLY A 109 GLU A 129 -1 O GLY A 109 N ARG A 99 SHEET 3 AA5 5 SER A 193 MET A 198 -1 O GLU A 197 N SER A 126 SHEET 4 AA5 5 ASP A 201 ASP A 206 -1 O ASP A 201 N MET A 198 SHEET 5 AA5 5 MET A 262 ARG A 263 -1 O MET A 262 N ILE A 204 SHEET 1 AA6 2 VAL A 232 PHE A 234 0 SHEET 2 AA6 2 VAL A 244 ALA A 246 -1 O LEU A 245 N GLU A 233 SHEET 1 AA7 4 SER A 305 ASP A 312 0 SHEET 2 AA7 4 VAL A 318 VAL A 324 -1 O LYS A 323 N SER A 305 SHEET 3 AA7 4 ASP A 361 ASN A 368 -1 O VAL A 363 N VAL A 322 SHEET 4 AA7 4 ILE A 348 LEU A 349 -1 N ILE A 348 O ASN A 368 SHEET 1 AA8 2 CYS A 330 LYS A 331 0 SHEET 2 AA8 2 ILE A 355 ALA A 356 -1 O ALA A 356 N CYS A 330 SHEET 1 AA9 3 VAL A 334 ALA A 337 0 SHEET 2 AA9 3 GLY A 372 VAL A 378 -1 O ILE A 377 N ILE A 335 SHEET 3 AA9 3 LEU A 385 LYS A 391 -1 O TYR A 387 N ILE A 376 SHEET 1 AB1 4 GLN H 4 SER H 8 0 SHEET 2 AB1 4 THR H 18 SER H 26 -1 O THR H 24 N VAL H 6 SHEET 3 AB1 4 GLN H 78 ASN H 84 -1 O PHE H 79 N CYS H 23 SHEET 4 AB1 4 VAL H 68 GLU H 73 -1 N THR H 69 O LYS H 82 SHEET 1 AB2 5 SER H 58 TYR H 60 0 SHEET 2 AB2 5 GLU H 47 ILE H 52 -1 N TYR H 51 O ASN H 59 SHEET 3 AB2 5 HIS H 34 GLN H 40 -1 N ARG H 39 O GLU H 47 SHEET 4 AB2 5 ALA H 92 ASP H 102 -1 O TYR H 95 N ILE H 38 SHEET 5 AB2 5 TYR H 107 TRP H 114 -1 O VAL H 113 N ARG H 98 SHEET 1 AB3 5 SER H 58 TYR H 60 0 SHEET 2 AB3 5 GLU H 47 ILE H 52 -1 N TYR H 51 O ASN H 59 SHEET 3 AB3 5 HIS H 34 GLN H 40 -1 N ARG H 39 O GLU H 47 SHEET 4 AB3 5 ALA H 92 ASP H 102 -1 O TYR H 95 N ILE H 38 SHEET 5 AB3 5 THR H 118 VAL H 120 -1 O THR H 118 N TYR H 94 SHEET 1 AB4 4 MET L 4 SER L 7 0 SHEET 2 AB4 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AB4 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AB4 4 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 AB5 6 THR L 10 ALA L 13 0 SHEET 2 AB5 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB5 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB5 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB5 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB5 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AB6 4 THR L 10 ALA L 13 0 SHEET 2 AB6 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB6 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB6 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.03 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.04 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.03 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.04 SSBOND 5 CYS A 182 CYS A 283 1555 1555 2.03 SSBOND 6 CYS A 300 CYS A 330 1555 1555 2.03 SSBOND 7 CYS H 23 CYS H 96 1555 1555 2.04 SSBOND 8 CYS L 23 CYS L 88 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 -0.46 CISPEP 2 SER L 56 GLY L 57 0 -0.26 CISPEP 3 TYR L 94 SER L 95 0 3.15 CRYST1 102.915 102.915 364.874 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009717 0.005610 0.000000 0.00000 SCALE2 0.000000 0.011220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002741 0.00000