HEADER VIRAL PROTEIN/IMMUNE SYSTEM 04-DEC-18 6IW0 TITLE CRYSTAL STRUCTURE OF 5A SCFV IN COMPLEX WITH YFV-17D SE IN POSTFUSION TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF MONOCLONAL ANTIBODY 5A; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF MONOCLONAL ANTIBODY 5A; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YELLOW FEVER VIRUS (STRAIN 17D VACCINE); SOURCE 3 ORGANISM_COMMON: YFV; SOURCE 4 ORGANISM_TAXID: 11090; SOURCE 5 STRAIN: 17D VACCINE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YELLOW FEVER VIRUS, ENVELOPE PROTEIN, FLAVIVIRUS, NEUTRALIZING KEYWDS 2 MONOCLONAL ANTIBODY, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.S.LU,H.X.XIAO,S.H.LI,X.F.PANG REVDAT 2 27-FEB-19 6IW0 1 REMARK REVDAT 1 13-FEB-19 6IW0 0 JRNL AUTH X.LU,H.XIAO,S.LI,X.PANG,J.SONG,S.LIU,H.CHENG,Y.LI,X.WANG, JRNL AUTH 2 C.HUANG,T.GUO,J.TER MEULEN,S.DAFFIS,J.YAN,L.DAI,Z.RAO, JRNL AUTH 3 H.D.KLENK,J.QI,Y.SHI,G.F.GAO JRNL TITL DOUBLE LOCK OF A HUMAN NEUTRALIZING AND PROTECTIVE JRNL TITL 2 MONOCLONAL ANTIBODY TARGETING THE YELLOW FEVER VIRUS JRNL TITL 3 ENVELOPE. JRNL REF CELL REP V. 26 438 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 30625326 JRNL DOI 10.1016/J.CELREP.2018.12.065 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 8668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.336 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4677 - 5.1360 0.99 3110 157 0.2289 0.3051 REMARK 3 2 5.1360 - 4.0774 1.00 3001 147 0.2316 0.2668 REMARK 3 3 4.0774 - 3.5622 0.72 2158 95 0.4164 0.5295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.800 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4764 REMARK 3 ANGLE : 0.881 6461 REMARK 3 CHIRALITY : 0.036 727 REMARK 3 PLANARITY : 0.004 822 REMARK 3 DIHEDRAL : 15.862 1706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -12.8307 -52.3736 5.4093 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.1867 REMARK 3 T33: 0.0757 T12: -0.0358 REMARK 3 T13: 0.0656 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.2115 L22: 0.1665 REMARK 3 L33: 0.0888 L12: 0.0111 REMARK 3 L13: 0.0235 L23: 0.1509 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.0003 S13: -0.0963 REMARK 3 S21: -0.0206 S22: -0.0531 S23: 0.1884 REMARK 3 S31: -0.1270 S32: 0.0847 S33: 0.0779 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): -1.9372 -27.0862 -53.4843 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.2588 REMARK 3 T33: 0.3275 T12: -0.0863 REMARK 3 T13: -0.0364 T23: 0.1298 REMARK 3 L TENSOR REMARK 3 L11: 0.0140 L22: 0.1218 REMARK 3 L33: 0.0448 L12: 0.0228 REMARK 3 L13: 0.0039 L23: 0.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: 0.0468 S13: 0.0733 REMARK 3 S21: -0.3297 S22: -0.1327 S23: 0.0455 REMARK 3 S31: -0.2345 S32: 0.1144 S33: -0.1305 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): -5.0201 -17.6799 -34.5262 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0735 REMARK 3 T33: 0.1911 T12: -0.1675 REMARK 3 T13: -0.2601 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 0.0298 L22: -0.0050 REMARK 3 L33: -0.0015 L12: 0.0083 REMARK 3 L13: 0.0123 L23: 0.0187 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.0313 S13: -0.1656 REMARK 3 S21: -0.0322 S22: -0.0582 S23: 0.0846 REMARK 3 S31: -0.0057 S32: -0.0154 S33: -0.1018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8668 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 4.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.99550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.01962 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 122.89167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.99550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.01962 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 122.89167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.99550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.01962 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 122.89167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.99550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.01962 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 122.89167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.99550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.01962 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 122.89167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.99550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.01962 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 122.89167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.03923 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 245.78333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.03923 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 245.78333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.03923 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 245.78333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.03923 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 245.78333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.03923 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 245.78333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.03923 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 245.78333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -51.99550 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -90.05885 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.99550 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -90.05885 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 HIS A 2 REMARK 465 VAL A 145 REMARK 465 GLY A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 465 GLN A 149 REMARK 465 GLU A 150 REMARK 465 ASN A 151 REMARK 465 TRP A 152 REMARK 465 ASN A 153 REMARK 465 THR A 154 REMARK 465 ASP A 339 REMARK 465 LEU A 340 REMARK 465 THR A 341 REMARK 465 GLY A 393 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 465 MET H 1 REMARK 465 VAL H 122 REMARK 465 SER H 123 REMARK 465 SER H 124 REMARK 465 GLY H 125 REMARK 465 GLY H 126 REMARK 465 GLY H 127 REMARK 465 GLY H 128 REMARK 465 SER H 129 REMARK 465 GLY H 130 REMARK 465 GLY H 131 REMARK 465 GLY H 132 REMARK 465 GLY H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 465 GLY H 136 REMARK 465 GLY H 137 REMARK 465 GLY H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 GLY H 141 REMARK 465 GLY H 142 REMARK 465 GLY H 143 REMARK 465 SER H 144 REMARK 465 GLN H 145 REMARK 465 ARG L 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 11 CG CD NE CZ NH1 NH2 REMARK 470 THR H 76 CG2 REMARK 470 LYS L 39 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO L 8 OG1 THR L 102 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 111 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 18.77 59.84 REMARK 500 HIS A 67 83.55 53.71 REMARK 500 ASN A 103 50.74 -119.14 REMARK 500 CYS A 105 -159.36 -104.75 REMARK 500 ASP A 189 104.33 -56.80 REMARK 500 GLU A 199 -122.82 55.12 REMARK 500 THR A 214 46.57 -97.65 REMARK 500 HIS A 238 -126.70 -113.18 REMARK 500 ALA A 240 33.56 -141.51 REMARK 500 ASN A 269 -74.64 -89.89 REMARK 500 ASN A 271 18.25 59.24 REMARK 500 THR A 301 -53.93 -132.88 REMARK 500 ASP A 302 -147.34 -80.98 REMARK 500 SER A 325 -65.85 -102.65 REMARK 500 ALA A 328 -154.90 -69.28 REMARK 500 ALA A 343 -163.13 -77.26 REMARK 500 ASN A 353 66.34 35.36 REMARK 500 PRO H 15 158.48 -49.12 REMARK 500 GLU H 17 -155.04 -103.30 REMARK 500 HIS H 33 -175.36 57.50 REMARK 500 PRO H 42 132.99 -38.73 REMARK 500 LEU H 64 -17.27 -141.28 REMARK 500 THR H 87 -167.95 -126.64 REMARK 500 ALA H 92 -170.59 -171.68 REMARK 500 GLU H 99 -142.13 -89.49 REMARK 500 ARG H 101 118.13 -160.95 REMARK 500 ASP H 103 -57.60 65.89 REMARK 500 TYR H 108 -72.96 -115.97 REMARK 500 SER H 110 160.70 178.65 REMARK 500 VAL L 15 88.79 -58.93 REMARK 500 ALA L 51 -69.69 60.51 REMARK 500 ASN L 92 -14.51 64.28 REMARK 500 TYR L 94 -78.39 -160.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 6IW0 A 1 395 UNP P03314 POLG_YEFV1 286 680 DBREF 6IW0 H 1 145 PDB 6IW0 6IW0 1 145 DBREF 6IW0 L 2 108 PDB 6IW0 6IW0 2 108 SEQRES 1 A 395 ALA HIS CYS ILE GLY ILE THR ASP ARG ASP PHE ILE GLU SEQRES 2 A 395 GLY VAL HIS GLY GLY THR TRP VAL SER ALA THR LEU GLU SEQRES 3 A 395 GLN ASP LYS CYS VAL THR VAL MET ALA PRO ASP LYS PRO SEQRES 4 A 395 SER LEU ASP ILE SER LEU GLU THR VAL ALA ILE ASP ARG SEQRES 5 A 395 PRO ALA GLU VAL ARG LYS VAL CYS TYR ASN ALA VAL LEU SEQRES 6 A 395 THR HIS VAL LYS ILE ASN ASP LYS CYS PRO SER THR GLY SEQRES 7 A 395 GLU ALA HIS LEU ALA GLU GLU ASN GLU GLY ASP ASN ALA SEQRES 8 A 395 CYS LYS ARG THR TYR SER ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 395 CYS GLY LEU PHE GLY LYS GLY SER ILE VAL ALA CYS ALA SEQRES 10 A 395 LYS PHE THR CYS ALA LYS SER MET SER LEU PHE GLU VAL SEQRES 11 A 395 ASP GLN THR LYS ILE GLN TYR VAL ILE ARG ALA GLN LEU SEQRES 12 A 395 HIS VAL GLY ALA LYS GLN GLU ASN TRP ASN THR ASP ILE SEQRES 13 A 395 LYS THR LEU LYS PHE ASP ALA LEU SER GLY SER GLN GLU SEQRES 14 A 395 VAL GLU PHE ILE GLY TYR GLY LYS ALA THR LEU GLU CYS SEQRES 15 A 395 GLN VAL GLN THR ALA VAL ASP PHE GLY ASN SER TYR ILE SEQRES 16 A 395 ALA GLU MET GLU THR GLU SER TRP ILE VAL ASP ARG GLN SEQRES 17 A 395 TRP ALA GLN ASP LEU THR LEU PRO TRP GLN SER GLY SER SEQRES 18 A 395 GLY GLY VAL TRP ARG GLU MET HIS HIS LEU VAL GLU PHE SEQRES 19 A 395 GLU PRO PRO HIS ALA ALA THR ILE ARG VAL LEU ALA LEU SEQRES 20 A 395 GLY ASN GLN GLU GLY SER LEU LYS THR ALA LEU THR GLY SEQRES 21 A 395 ALA MET ARG VAL THR LYS ASP THR ASN ASP ASN ASN LEU SEQRES 22 A 395 TYR LYS LEU HIS GLY GLY HIS VAL SER CYS ARG VAL LYS SEQRES 23 A 395 LEU SER ALA LEU THR LEU LYS GLY THR SER TYR LYS ILE SEQRES 24 A 395 CYS THR ASP LYS MET PHE PHE VAL LYS ASN PRO THR ASP SEQRES 25 A 395 THR GLY HIS GLY THR VAL VAL MET GLN VAL LYS VAL SER SEQRES 26 A 395 LYS GLY ALA PRO CYS ARG ILE PRO VAL ILE VAL ALA ASP SEQRES 27 A 395 ASP LEU THR ALA ALA ILE ASN LYS GLY ILE LEU VAL THR SEQRES 28 A 395 VAL ASN PRO ILE ALA SER THR ASN ASP ASP GLU VAL LEU SEQRES 29 A 395 ILE GLU VAL ASN PRO PRO PHE GLY ASP SER TYR ILE ILE SEQRES 30 A 395 VAL GLY ARG GLY ASP SER ARG LEU THR TYR GLN TRP HIS SEQRES 31 A 395 LYS GLU GLY SER SER SEQRES 1 H 145 MET GLU VAL GLN LEU VAL GLU SER GLY PRO ARG LEU VAL SEQRES 2 H 145 LYS PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER SEQRES 3 H 145 GLY GLY SER THR TYR ASN HIS HIS TRP SER TRP ILE ARG SEQRES 4 H 145 GLN PRO PRO GLY ARG GLY LEU GLU TRP ILE GLY TYR ILE SEQRES 5 H 145 SER TYR SER GLY LYS SER ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 145 SER ARG VAL THR ILE SER LEU GLU PRO SER THR THR GLN SEQRES 7 H 145 PHE SER LEU LYS LEU ASN SER LEU THR ALA ALA ASP THR SEQRES 8 H 145 ALA VAL TYR TYR CYS ALA ARG GLU TYR ARG ASP ASP THR SEQRES 9 H 145 ASN TYR TYR TYR TYR SER LEU ASP VAL TRP GLY PRO GLY SEQRES 10 H 145 THR MET VAL THR VAL SER SER GLY GLY GLY GLY SER GLY SEQRES 11 H 145 GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 12 H 145 SER GLN SEQRES 1 L 107 ILE VAL MET THR GLN SER PRO SER THR LEU SER ALA SER SEQRES 2 L 107 VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER GLN SEQRES 3 L 107 SER ILE GLY SER TRP LEU ALA TRP TYR GLN GLN LYS PRO SEQRES 4 L 107 GLY LYS ALA PRO LYS LEU LEU ILE TYR LYS ALA SER SER SEQRES 5 L 107 LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 107 SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU GLN SEQRES 7 L 107 PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR ASN SEQRES 8 L 107 ASN TYR SER TYR THR PHE GLY PRO GLY THR LYS LEU GLU SEQRES 9 L 107 ILE LYS ARG HELIX 1 AA1 THR A 7 ARG A 9 5 3 HELIX 2 AA2 LEU A 82 ASN A 86 5 5 HELIX 3 AA3 ASP A 131 LYS A 134 5 4 HELIX 4 AA4 ARG A 207 ASP A 212 1 6 HELIX 5 AA5 GLU A 227 HIS A 230 5 4 HELIX 6 AA6 GLN A 250 LEU A 258 1 9 HELIX 7 AA7 LEU H 64 SER H 66 5 3 HELIX 8 AA8 GLN L 79 PHE L 83 5 5 SHEET 1 AA1 5 ILE A 4 GLY A 5 0 SHEET 2 AA1 5 CYS A 30 ALA A 35 1 O CYS A 30 N ILE A 4 SHEET 3 AA1 5 LYS A 38 ASP A 51 -1 O ILE A 43 N VAL A 31 SHEET 4 AA1 5 GLN A 136 GLN A 142 -1 O VAL A 138 N THR A 47 SHEET 5 AA1 5 LYS A 157 ASP A 162 -1 O LYS A 157 N ALA A 141 SHEET 1 AA2 4 ILE A 4 GLY A 5 0 SHEET 2 AA2 4 CYS A 30 ALA A 35 1 O CYS A 30 N ILE A 4 SHEET 3 AA2 4 LYS A 38 ASP A 51 -1 O ILE A 43 N VAL A 31 SHEET 4 AA2 4 LEU A 273 LYS A 275 -1 O TYR A 274 N ILE A 50 SHEET 1 AA3 5 PHE A 11 GLU A 13 0 SHEET 2 AA3 5 THR A 19 GLU A 26 -1 O TRP A 20 N ILE A 12 SHEET 3 AA3 5 HIS A 280 LEU A 287 -1 O VAL A 281 N LEU A 25 SHEET 4 AA3 5 ALA A 178 GLN A 185 -1 N THR A 179 O LYS A 286 SHEET 5 AA3 5 SER A 167 VAL A 170 -1 N VAL A 170 O ALA A 178 SHEET 1 AA4 4 ASN A 90 ARG A 99 0 SHEET 2 AA4 4 GLY A 109 PHE A 128 -1 O ILE A 113 N THR A 95 SHEET 3 AA4 4 SER A 193 MET A 198 -1 O ILE A 195 N PHE A 128 SHEET 4 AA4 4 GLU A 201 ASP A 206 -1 O VAL A 205 N TYR A 194 SHEET 1 AA5 4 ASN A 90 ARG A 99 0 SHEET 2 AA5 4 GLY A 109 PHE A 128 -1 O ILE A 113 N THR A 95 SHEET 3 AA5 4 ARG A 57 ASP A 72 -1 N VAL A 64 O THR A 120 SHEET 4 AA5 4 TRP A 217 SER A 219 -1 O GLN A 218 N LYS A 58 SHEET 1 AA6 2 VAL A 232 PHE A 234 0 SHEET 2 AA6 2 VAL A 244 ALA A 246 -1 O LEU A 245 N GLU A 233 SHEET 1 AA7 3 LYS A 298 ILE A 299 0 SHEET 2 AA7 3 CYS A 330 ARG A 331 1 O ARG A 331 N LYS A 298 SHEET 3 AA7 3 ILE A 355 ALA A 356 -1 O ALA A 356 N CYS A 330 SHEET 1 AA8 4 MET A 304 ASP A 312 0 SHEET 2 AA8 4 VAL A 318 VAL A 324 -1 O GLN A 321 N LYS A 308 SHEET 3 AA8 4 GLU A 362 ASN A 368 -1 O ILE A 365 N MET A 320 SHEET 4 AA8 4 ILE A 348 LEU A 349 -1 N ILE A 348 O ASN A 368 SHEET 1 AA9 3 VAL A 334 ALA A 337 0 SHEET 2 AA9 3 GLY A 372 VAL A 378 -1 O ILE A 377 N ILE A 335 SHEET 3 AA9 3 LEU A 385 LYS A 391 -1 O TRP A 389 N SER A 374 SHEET 1 AB1 4 GLN H 4 SER H 8 0 SHEET 2 AB1 4 SER H 20 SER H 26 -1 O THR H 24 N VAL H 6 SHEET 3 AB1 4 GLN H 78 LEU H 83 -1 O PHE H 79 N CYS H 23 SHEET 4 AB1 4 VAL H 68 SER H 71 -1 N THR H 69 O LYS H 82 SHEET 1 AB2 5 ASN H 59 TYR H 60 0 SHEET 2 AB2 5 GLU H 47 ILE H 52 -1 N TYR H 51 O ASN H 59 SHEET 3 AB2 5 TRP H 35 GLN H 40 -1 N TRP H 35 O ILE H 52 SHEET 4 AB2 5 ALA H 92 ARG H 98 -1 O TYR H 95 N ILE H 38 SHEET 5 AB2 5 THR H 118 VAL H 120 -1 O VAL H 120 N ALA H 92 SHEET 1 AB3 3 MET L 4 SER L 7 0 SHEET 2 AB3 3 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB3 3 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 1 AB4 5 THR L 10 ALA L 13 0 SHEET 2 AB4 5 THR L 102 ILE L 106 1 O GLU L 105 N ALA L 13 SHEET 3 AB4 5 THR L 85 CYS L 88 -1 N TYR L 86 O THR L 102 SHEET 4 AB4 5 TRP L 35 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB4 5 LYS L 45 LEU L 46 -1 O LYS L 45 N GLN L 37 SHEET 1 AB5 2 ILE L 48 TYR L 49 0 SHEET 2 AB5 2 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.03 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.03 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.03 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.03 SSBOND 5 CYS A 182 CYS A 283 1555 1555 2.03 SSBOND 6 CYS A 300 CYS A 330 1555 1555 2.03 SSBOND 7 CYS H 23 CYS H 96 1555 1555 2.03 SSBOND 8 CYS L 23 CYS L 88 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 2.30 CRYST1 103.991 103.991 368.675 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009616 0.005552 0.000000 0.00000 SCALE2 0.000000 0.011104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002712 0.00000