HEADER APOPTOSIS 05-DEC-18 6IWB TITLE CRYSTAL STRUCTURE OF A COMPUTATIONALLY DESIGNED PROTEIN (LD3) IN TITLE 2 COMPLEX WITH BCL-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN E; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: APO-E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: APOPTOSIS REGULATOR BCL-2,APOPTOSIS REGULATOR BCL-2; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 1-34,UNP RESIDUES 92-207; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BCL2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.KIM,M.J.KWAK,B.-H.OH,B.E.CORREIA,P.GAINZA REVDAT 3 27-MAR-24 6IWB 1 REMARK REVDAT 2 24-JUN-20 6IWB 1 JRNL REVDAT 1 11-DEC-19 6IWB 0 JRNL AUTH G.GIORDANO-ATTIANESE,P.GAINZA,E.GRAY-GAILLARD,E.CRIBIOLI, JRNL AUTH 2 S.SHUI,S.KIM,M.J.KWAK,S.VOLLERS,A.J.CORRIA OSORIO, JRNL AUTH 3 P.REICHENBACH,J.BONET,B.H.OH,M.IRVING,G.COUKOS,B.E.CORREIA JRNL TITL A COMPUTATIONALLY DESIGNED CHIMERIC ANTIGEN RECEPTOR JRNL TITL 2 PROVIDES A SMALL-MOLECULE SAFETY SWITCH FOR T-CELL THERAPY. JRNL REF NAT.BIOTECHNOL. V. 38 426 2020 JRNL REFN ISSN 1087-0156 JRNL PMID 32015549 JRNL DOI 10.1038/S41587-019-0403-9 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.710 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 24082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0329 - 5.1981 0.99 2846 147 0.2091 0.2015 REMARK 3 2 5.1981 - 4.1267 0.99 2815 143 0.2099 0.2209 REMARK 3 3 4.1267 - 3.6053 0.98 2775 148 0.2307 0.2991 REMARK 3 4 3.6053 - 3.2758 0.96 2723 144 0.2429 0.3292 REMARK 3 5 3.2758 - 3.0411 0.94 2628 141 0.2938 0.3524 REMARK 3 6 3.0411 - 2.8618 0.92 2584 139 0.2841 0.3176 REMARK 3 7 2.8618 - 2.7185 0.83 2331 124 0.2894 0.3901 REMARK 3 8 2.7185 - 2.6002 0.79 2214 118 0.2893 0.3564 REMARK 3 9 2.6002 - 2.5001 0.70 1964 98 0.2898 0.3529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4535 REMARK 3 ANGLE : 0.768 6138 REMARK 3 CHIRALITY : 0.050 679 REMARK 3 PLANARITY : 0.004 794 REMARK 3 DIHEDRAL : 19.269 2687 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG2000, 0.1M SODIUM SUCCINATE (PH REMARK 280 5.5), 0.32M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.52733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.76367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.14550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.38183 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.90917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 GLY A 152 REMARK 465 ALA A 153 REMARK 465 ALA A 154 REMARK 465 GLU A 155 REMARK 465 GLN A 156 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 32 REMARK 465 GLY B 33 REMARK 465 ASP B 34 REMARK 465 ASP B 35 REMARK 465 VAL B 36 REMARK 465 GLU B 37 REMARK 465 GLU B 38 REMARK 465 ASN B 39 REMARK 465 ARG B 40 REMARK 465 THR B 41 REMARK 465 GLU B 42 REMARK 465 ALA B 43 REMARK 465 PRO B 44 REMARK 465 GLU B 45 REMARK 465 GLY B 46 REMARK 465 THR B 47 REMARK 465 GLU B 48 REMARK 465 MET B 165 REMARK 465 ARG B 166 REMARK 465 MET C 1 REMARK 465 HIS C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 GLY C 8 REMARK 465 SER C 9 REMARK 465 ALA C 153 REMARK 465 ALA C 154 REMARK 465 GLU C 155 REMARK 465 GLN C 156 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 465 ARG D 6 REMARK 465 THR D 7 REMARK 465 GLY D 8 REMARK 465 ALA D 32 REMARK 465 GLY D 33 REMARK 465 ASP D 34 REMARK 465 ASP D 35 REMARK 465 VAL D 36 REMARK 465 GLU D 37 REMARK 465 GLU D 38 REMARK 465 ASN D 39 REMARK 465 ARG D 40 REMARK 465 THR D 41 REMARK 465 GLU D 42 REMARK 465 ALA D 43 REMARK 465 PRO D 44 REMARK 465 GLU D 45 REMARK 465 GLY D 46 REMARK 465 THR D 47 REMARK 465 GLU D 48 REMARK 465 MET D 165 REMARK 465 ARG D 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 9 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LEU B 23 CG CD1 CD2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 MET B 74 CG SD CE REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 HIS B 79 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 122 CG OD1 ND2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 11 CG CD OE1 NE2 REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 470 LYS C 144 CG CD CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 150 CG CD OE1 NE2 REMARK 470 TYR D 9 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 12 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 25 CG CD OE1 NE2 REMARK 470 ARG D 26 CG CD NE CZ NH1 NH2 REMARK 470 TRP D 30 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 30 CZ3 CH2 REMARK 470 GLU D 50 CG CD OE1 OE2 REMARK 470 ARG D 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 73 CG CD OE1 OE2 REMARK 470 GLN D 77 CG CD OE1 NE2 REMARK 470 HIS D 79 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 123 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 62 OE2 GLU A 66 2.15 REMARK 500 OG SER A 81 OH TYR A 149 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU C 142 CG LEU C 142 CD2 -0.230 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 19 CG1 - CB - CG2 ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU C 142 CB - CG - CD1 ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 11 56.88 -94.84 REMARK 500 ARG A 12 -48.12 -136.26 REMARK 500 GLU B 29 141.22 -174.89 REMARK 500 TYR B 67 -85.40 -60.48 REMARK 500 ARG B 68 1.30 -62.25 REMARK 500 ARG B 69 -73.93 -66.04 REMARK 500 ASP B 70 51.43 -109.26 REMARK 500 PHE B 71 -156.36 -144.53 REMARK 500 GLU B 73 -126.24 -66.53 REMARK 500 MET B 74 41.28 -73.69 REMARK 500 SER B 76 34.88 -81.04 REMARK 500 GLU B 124 37.45 74.59 REMARK 500 SER B 126 -36.03 -155.56 REMARK 500 THR B 137 -72.98 -57.61 REMARK 500 PRO B 163 16.68 -67.75 REMARK 500 GLU C 66 9.45 -67.24 REMARK 500 PRO C 71 48.86 -6.96 REMARK 500 ALA C 73 32.99 -86.19 REMARK 500 THR C 76 49.70 -104.98 REMARK 500 ASP C 138 2.79 -67.01 REMARK 500 TYR D 28 -148.53 -160.48 REMARK 500 ARG D 68 1.23 -67.65 REMARK 500 GLU D 73 -83.18 -144.59 REMARK 500 GLN D 77 84.26 -66.73 REMARK 500 ASP D 99 44.56 -102.78 REMARK 500 GLU D 124 31.86 70.73 REMARK 500 SER D 126 -46.02 -135.21 REMARK 500 ARG D 142 -60.71 -96.48 REMARK 500 PRO D 163 5.88 -65.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 70 PRO C 71 141.96 REMARK 500 ARG C 77 ALA C 78 148.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE L21, E22, S25, S28, I129, A130, Q132, L133 REMARK 999 I136 G137, F140 AND A154 RESIDUES ARE MUTATED REGIONS BASED ON THE REMARK 999 RESULT OF COMPUTATIONAL DESIGN. DBREF 6IWB A 10 155 UNP P02649 APOE_HUMAN 41 186 DBREF 6IWB B 1 34 UNP P10415 BCL2_HUMAN 1 34 DBREF 6IWB B 51 166 UNP P10415 BCL2_HUMAN 92 207 DBREF 6IWB C 10 155 UNP P02649 APOE_HUMAN 41 186 DBREF 6IWB D 1 34 UNP P10415 BCL2_HUMAN 1 34 DBREF 6IWB D 51 166 UNP P10415 BCL2_HUMAN 92 207 SEQADV 6IWB MET A 1 UNP P02649 INITIATING METHIONINE SEQADV 6IWB HIS A 2 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS A 3 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS A 4 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS A 5 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS A 6 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS A 7 UNP P02649 EXPRESSION TAG SEQADV 6IWB GLY A 8 UNP P02649 EXPRESSION TAG SEQADV 6IWB SER A 9 UNP P02649 EXPRESSION TAG SEQADV 6IWB LEU A 21 UNP P02649 TRP 52 SEE SEQUENCE DETAILS SEQADV 6IWB GLU A 22 UNP P02649 ASP 53 SEE SEQUENCE DETAILS SEQADV 6IWB SER A 25 UNP P02649 ARG 56 SEE SEQUENCE DETAILS SEQADV 6IWB SER A 28 UNP P02649 GLN 59 SEE SEQUENCE DETAILS SEQADV 6IWB ARG A 99 UNP P02649 CYS 130 VARIANT SEQADV 6IWB ILE A 129 UNP P02649 ARG 160 SEE SEQUENCE DETAILS SEQADV 6IWB ALA A 130 UNP P02649 LYS 161 SEE SEQUENCE DETAILS SEQADV 6IWB GLN A 132 UNP P02649 ARG 163 SEE SEQUENCE DETAILS SEQADV 6IWB LEU A 133 UNP P02649 LYS 164 SEE SEQUENCE DETAILS SEQADV 6IWB ILE A 136 UNP P02649 LEU 167 SEE SEQUENCE DETAILS SEQADV 6IWB GLY A 137 UNP P02649 ARG 168 SEE SEQUENCE DETAILS SEQADV 6IWB PHE A 140 UNP P02649 ASP 171 SEE SEQUENCE DETAILS SEQADV 6IWB ALA A 154 UNP P02649 ARG 185 SEE SEQUENCE DETAILS SEQADV 6IWB GLN A 156 UNP P02649 CLONING ARTIFACT SEQADV 6IWB ASP B 35 UNP P10415 LINKER SEQADV 6IWB VAL B 36 UNP P10415 LINKER SEQADV 6IWB GLU B 37 UNP P10415 LINKER SEQADV 6IWB GLU B 38 UNP P10415 LINKER SEQADV 6IWB ASN B 39 UNP P10415 LINKER SEQADV 6IWB ARG B 40 UNP P10415 LINKER SEQADV 6IWB THR B 41 UNP P10415 LINKER SEQADV 6IWB GLU B 42 UNP P10415 LINKER SEQADV 6IWB ALA B 43 UNP P10415 LINKER SEQADV 6IWB PRO B 44 UNP P10415 LINKER SEQADV 6IWB GLU B 45 UNP P10415 LINKER SEQADV 6IWB GLY B 46 UNP P10415 LINKER SEQADV 6IWB THR B 47 UNP P10415 LINKER SEQADV 6IWB GLU B 48 UNP P10415 LINKER SEQADV 6IWB SER B 49 UNP P10415 LINKER SEQADV 6IWB GLU B 50 UNP P10415 LINKER SEQADV 6IWB MET C 1 UNP P02649 INITIATING METHIONINE SEQADV 6IWB HIS C 2 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS C 3 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS C 4 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS C 5 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS C 6 UNP P02649 EXPRESSION TAG SEQADV 6IWB HIS C 7 UNP P02649 EXPRESSION TAG SEQADV 6IWB GLY C 8 UNP P02649 EXPRESSION TAG SEQADV 6IWB SER C 9 UNP P02649 EXPRESSION TAG SEQADV 6IWB LEU C 21 UNP P02649 TRP 52 SEE SEQUENCE DETAILS SEQADV 6IWB GLU C 22 UNP P02649 ASP 53 SEE SEQUENCE DETAILS SEQADV 6IWB SER C 25 UNP P02649 ARG 56 SEE SEQUENCE DETAILS SEQADV 6IWB SER C 28 UNP P02649 GLN 59 SEE SEQUENCE DETAILS SEQADV 6IWB ARG C 99 UNP P02649 CYS 130 VARIANT SEQADV 6IWB ILE C 129 UNP P02649 ARG 160 SEE SEQUENCE DETAILS SEQADV 6IWB ALA C 130 UNP P02649 LYS 161 SEE SEQUENCE DETAILS SEQADV 6IWB GLN C 132 UNP P02649 ARG 163 SEE SEQUENCE DETAILS SEQADV 6IWB LEU C 133 UNP P02649 LYS 164 SEE SEQUENCE DETAILS SEQADV 6IWB ILE C 136 UNP P02649 LEU 167 SEE SEQUENCE DETAILS SEQADV 6IWB GLY C 137 UNP P02649 ARG 168 SEE SEQUENCE DETAILS SEQADV 6IWB PHE C 140 UNP P02649 ASP 171 SEE SEQUENCE DETAILS SEQADV 6IWB ALA C 154 UNP P02649 ARG 185 SEE SEQUENCE DETAILS SEQADV 6IWB GLN C 156 UNP P02649 CLONING ARTIFACT SEQADV 6IWB ASP D 35 UNP P10415 LINKER SEQADV 6IWB VAL D 36 UNP P10415 LINKER SEQADV 6IWB GLU D 37 UNP P10415 LINKER SEQADV 6IWB GLU D 38 UNP P10415 LINKER SEQADV 6IWB ASN D 39 UNP P10415 LINKER SEQADV 6IWB ARG D 40 UNP P10415 LINKER SEQADV 6IWB THR D 41 UNP P10415 LINKER SEQADV 6IWB GLU D 42 UNP P10415 LINKER SEQADV 6IWB ALA D 43 UNP P10415 LINKER SEQADV 6IWB PRO D 44 UNP P10415 LINKER SEQADV 6IWB GLU D 45 UNP P10415 LINKER SEQADV 6IWB GLY D 46 UNP P10415 LINKER SEQADV 6IWB THR D 47 UNP P10415 LINKER SEQADV 6IWB GLU D 48 UNP P10415 LINKER SEQADV 6IWB SER D 49 UNP P10415 LINKER SEQADV 6IWB GLU D 50 UNP P10415 LINKER SEQRES 1 A 156 MET HIS HIS HIS HIS HIS HIS GLY SER GLY GLN ARG TRP SEQRES 2 A 156 GLU LEU ALA LEU GLY ARG PHE LEU GLU TYR LEU SER TRP SEQRES 3 A 156 VAL SER THR LEU SER GLU GLN VAL GLN GLU GLU LEU LEU SEQRES 4 A 156 SER SER GLN VAL THR GLN GLU LEU ARG ALA LEU MET ASP SEQRES 5 A 156 GLU THR MET LYS GLU LEU LYS ALA TYR LYS SER GLU LEU SEQRES 6 A 156 GLU GLU GLN LEU THR PRO VAL ALA GLU GLU THR ARG ALA SEQRES 7 A 156 ARG LEU SER LYS GLU LEU GLN ALA ALA GLN ALA ARG LEU SEQRES 8 A 156 GLY ALA ASP MET GLU ASP VAL ARG GLY ARG LEU VAL GLN SEQRES 9 A 156 TYR ARG GLY GLU VAL GLN ALA MET LEU GLY GLN SER THR SEQRES 10 A 156 GLU GLU LEU ARG VAL ARG LEU ALA SER HIS LEU ILE ALA SEQRES 11 A 156 LEU GLN LEU ARG LEU ILE GLY ASP ALA PHE ASP LEU GLN SEQRES 12 A 156 LYS ARG LEU ALA VAL TYR GLN ALA GLY ALA ALA GLU GLN SEQRES 1 B 166 MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN ARG GLU SEQRES 2 B 166 ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER GLN ARG SEQRES 3 B 166 GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU GLU ASN SEQRES 4 B 166 ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU VAL VAL SEQRES 5 B 166 HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SER ARG SEQRES 6 B 166 ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER GLN LEU SEQRES 7 B 166 HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE ALA THR SEQRES 8 B 166 VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY SEQRES 9 B 166 ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL MET CYS SEQRES 10 B 166 VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU VAL ASP SEQRES 11 B 166 ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN ARG HIS SEQRES 12 B 166 LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP ASP ALA SEQRES 13 B 166 PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 C 156 MET HIS HIS HIS HIS HIS HIS GLY SER GLY GLN ARG TRP SEQRES 2 C 156 GLU LEU ALA LEU GLY ARG PHE LEU GLU TYR LEU SER TRP SEQRES 3 C 156 VAL SER THR LEU SER GLU GLN VAL GLN GLU GLU LEU LEU SEQRES 4 C 156 SER SER GLN VAL THR GLN GLU LEU ARG ALA LEU MET ASP SEQRES 5 C 156 GLU THR MET LYS GLU LEU LYS ALA TYR LYS SER GLU LEU SEQRES 6 C 156 GLU GLU GLN LEU THR PRO VAL ALA GLU GLU THR ARG ALA SEQRES 7 C 156 ARG LEU SER LYS GLU LEU GLN ALA ALA GLN ALA ARG LEU SEQRES 8 C 156 GLY ALA ASP MET GLU ASP VAL ARG GLY ARG LEU VAL GLN SEQRES 9 C 156 TYR ARG GLY GLU VAL GLN ALA MET LEU GLY GLN SER THR SEQRES 10 C 156 GLU GLU LEU ARG VAL ARG LEU ALA SER HIS LEU ILE ALA SEQRES 11 C 156 LEU GLN LEU ARG LEU ILE GLY ASP ALA PHE ASP LEU GLN SEQRES 12 C 156 LYS ARG LEU ALA VAL TYR GLN ALA GLY ALA ALA GLU GLN SEQRES 1 D 166 MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN ARG GLU SEQRES 2 D 166 ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER GLN ARG SEQRES 3 D 166 GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU GLU ASN SEQRES 4 D 166 ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU VAL VAL SEQRES 5 D 166 HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SER ARG SEQRES 6 D 166 ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER GLN LEU SEQRES 7 D 166 HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE ALA THR SEQRES 8 D 166 VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY SEQRES 9 D 166 ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL MET CYS SEQRES 10 D 166 VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU VAL ASP SEQRES 11 D 166 ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN ARG HIS SEQRES 12 D 166 LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP ASP ALA SEQRES 13 D 166 PHE VAL GLU LEU TYR GLY PRO SER MET ARG HET SO4 A 201 5 HET SO4 A 202 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *9(H2 O) HELIX 1 AA1 ARG A 12 THR A 29 1 18 HELIX 2 AA2 SER A 31 LEU A 39 1 9 HELIX 3 AA3 SER A 41 LEU A 69 1 29 HELIX 4 AA4 THR A 76 ALA A 111 1 36 HELIX 5 AA5 THR A 117 TYR A 149 1 33 HELIX 6 AA6 ASP B 10 GLN B 25 1 16 HELIX 7 AA7 GLU B 50 ARG B 68 1 19 HELIX 8 AA8 THR B 84 PHE B 97 1 14 HELIX 9 AA9 ASN B 102 ARG B 123 1 22 HELIX 10 AB1 SER B 126 HIS B 143 1 18 HELIX 11 AB2 LEU B 144 ASN B 151 1 8 HELIX 12 AB3 GLY B 153 GLY B 162 1 10 HELIX 13 AB4 GLN C 11 THR C 29 1 19 HELIX 14 AB5 SER C 31 LEU C 39 1 9 HELIX 15 AB6 SER C 41 LEU C 69 1 29 HELIX 16 AB7 GLU C 74 ALA C 78 5 5 HELIX 17 AB8 ARG C 79 MET C 112 1 34 HELIX 18 AB9 THR C 117 ASP C 138 1 22 HELIX 19 AC1 PHE C 140 ALA C 147 1 8 HELIX 20 AC2 ASP D 10 ARG D 26 1 17 HELIX 21 AC3 GLU D 50 PHE D 71 1 22 HELIX 22 AC4 THR D 84 PHE D 97 1 14 HELIX 23 AC5 ASN D 102 ARG D 123 1 22 HELIX 24 AC6 PRO D 127 HIS D 143 1 17 HELIX 25 AC7 LEU D 144 ASN D 151 1 8 HELIX 26 AC8 GLY D 153 GLY D 162 1 10 SITE 1 AC1 8 ARG A 101 ARG A 123 HIS A 127 HOH A 301 SITE 2 AC1 8 HOH A 303 ARG C 101 ARG C 123 HIS C 127 SITE 1 AC2 3 ARG A 48 ARG A 99 ARG C 12 CRYST1 129.718 129.718 80.291 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007709 0.004451 0.000000 0.00000 SCALE2 0.000000 0.008902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012455 0.00000