HEADER HYDROLASE/HYDROLASE INHIBITOR 10-DEC-18 6IXD TITLE X-RAY CRYSTAL STRUCTURE OF BPI-11 HIV-1 PROTEASE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.23.16; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HIV-1 PROTEASE, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ADACHI,K.HIDAKA REVDAT 3 22-NOV-23 6IXD 1 REMARK REVDAT 2 31-JUL-19 6IXD 1 JRNL REVDAT 1 22-MAY-19 6IXD 0 JRNL AUTH K.HIDAKA,M.ADACHI,Y.TSUDA JRNL TITL ACQUIRED REMOVABILITY OF ASPARTIC PROTEASE INHIBITORS BY JRNL TITL 2 DIRECT BIOTINYLATION. JRNL REF BIOCONJUG.CHEM. V. 30 1979 2019 JRNL REFN ISSN 1043-1802 JRNL PMID 30990716 JRNL DOI 10.1021/ACS.BIOCONJCHEM.9B00195 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 126508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0448 - 3.1068 1.00 4304 227 0.1487 0.1816 REMARK 3 2 3.1068 - 2.4660 1.00 4143 218 0.1613 0.1823 REMARK 3 3 2.4660 - 2.1543 1.00 4082 216 0.1524 0.1739 REMARK 3 4 2.1543 - 1.9573 1.00 4055 212 0.1316 0.1324 REMARK 3 5 1.9573 - 1.8170 1.00 4069 215 0.1337 0.1439 REMARK 3 6 1.8170 - 1.7099 1.00 4046 213 0.1360 0.1681 REMARK 3 7 1.7099 - 1.6243 1.00 4004 210 0.1254 0.1454 REMARK 3 8 1.6243 - 1.5535 1.00 4033 213 0.1214 0.1336 REMARK 3 9 1.5535 - 1.4937 1.00 4030 211 0.1140 0.1522 REMARK 3 10 1.4937 - 1.4422 1.00 4015 212 0.1154 0.1229 REMARK 3 11 1.4422 - 1.3971 1.00 4017 212 0.1085 0.1171 REMARK 3 12 1.3971 - 1.3572 1.00 3975 209 0.1096 0.1293 REMARK 3 13 1.3572 - 1.3214 1.00 4014 211 0.1043 0.1163 REMARK 3 14 1.3214 - 1.2892 1.00 3991 210 0.1034 0.1161 REMARK 3 15 1.2892 - 1.2599 1.00 3994 210 0.1017 0.1057 REMARK 3 16 1.2599 - 1.2331 1.00 3993 211 0.0990 0.1209 REMARK 3 17 1.2331 - 1.2084 1.00 3970 208 0.0989 0.1156 REMARK 3 18 1.2084 - 1.1856 1.00 3995 210 0.0960 0.1050 REMARK 3 19 1.1856 - 1.1644 1.00 3936 208 0.0933 0.1142 REMARK 3 20 1.1644 - 1.1447 1.00 4030 211 0.0956 0.1050 REMARK 3 21 1.1447 - 1.1262 1.00 4001 211 0.0985 0.1070 REMARK 3 22 1.1262 - 1.1089 1.00 3941 208 0.1021 0.1097 REMARK 3 23 1.1089 - 1.0926 1.00 3989 210 0.1028 0.1063 REMARK 3 24 1.0926 - 1.0772 1.00 3967 209 0.1049 0.1225 REMARK 3 25 1.0772 - 1.0626 1.00 3953 208 0.1162 0.1162 REMARK 3 26 1.0626 - 1.0488 1.00 3955 207 0.1246 0.1436 REMARK 3 27 1.0488 - 1.0357 1.00 3957 209 0.1368 0.1605 REMARK 3 28 1.0357 - 1.0232 0.99 3989 210 0.1551 0.1732 REMARK 3 29 1.0232 - 1.0113 0.99 3895 205 0.1797 0.1813 REMARK 3 30 1.0113 - 1.0000 0.96 3839 202 0.2050 0.2110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2200 REMARK 3 ANGLE : 1.337 3011 REMARK 3 CHIRALITY : 0.075 346 REMARK 3 PLANARITY : 0.008 370 REMARK 3 DIHEDRAL : 12.146 844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126583 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3FX5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM ACETATE BUFFER (PH 5.0), REMARK 280 20% SATURATED AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.15100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.15100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 8 O HOH A 301 1.48 REMARK 500 O HOH A 427 O HOH B 341 1.68 REMARK 500 O HOH A 415 O HOH A 457 1.80 REMARK 500 O3 GOL B 103 O HOH B 201 1.86 REMARK 500 O HOH A 346 O HOH A 419 1.94 REMARK 500 O HOH B 259 O HOH B 287 1.95 REMARK 500 O HOH B 330 O HOH B 359 1.98 REMARK 500 O HOH B 224 O HOH B 236 1.99 REMARK 500 O HOH A 304 O HOH A 425 2.04 REMARK 500 O HOH B 325 O HOH B 344 2.05 REMARK 500 O HOH A 347 O HOH A 402 2.06 REMARK 500 O HOH A 397 O HOH A 430 2.08 REMARK 500 O GLY B 48 O HOH B 202 2.09 REMARK 500 O GLY B 49 O HOH B 203 2.12 REMARK 500 O HOH A 314 O HOH A 407 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 440 O HOH B 300 3556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 35 129.19 -36.02 REMARK 500 PRO B 79 49.52 -78.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 477 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 479 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 373 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 374 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 375 DISTANCE = 6.94 ANGSTROMS REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (4R)-3-[(2S,3S)-3-[2-[4-[5-[(3AS,4S,6AR)-2- REMARK 630 OXIDANYLIDENE-1,3,3A,4,6,6A-HEXAHYDROTHIENO[3,4-D]IMIDAZOL-4-YL] REMARK 630 PENTANOYLAMINO]-2,6-DIMETHYL-PHENOXY]ETHANOYLAMINO]-2-OXIDANYL-4- REMARK 630 PHENYL-BUTANOYL]-5,5-DIMETHYL-N-[(1S,2R)-2-OXIDANYL-2,3-DIHYDRO-1H- REMARK 630 INDEN-1-YL]-1,3-THIAZOLIDINE-4-CARBOXAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 B0F B 101 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: BTN K0L 005 00B 00X REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B0F B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 105 DBREF 6IXD A 1 99 UNP Q5RZ08 Q5RZ08_9HIV1 1 99 DBREF 6IXD B 1 99 UNP Q5RZ08 Q5RZ08_9HIV1 1 99 SEQADV 6IXD LYS A 7 UNP Q5RZ08 GLN 7 ENGINEERED MUTATION SEQADV 6IXD ILE A 33 UNP Q5RZ08 LEU 33 ENGINEERED MUTATION SEQADV 6IXD ILE A 62 UNP Q5RZ08 LEU 63 ENGINEERED MUTATION SEQADV 6IXD ALA A 67 UNP Q5RZ08 CYS 67 ENGINEERED MUTATION SEQADV 6IXD ALA A 95 UNP Q5RZ08 CYS 95 ENGINEERED MUTATION SEQADV 6IXD LYS B 7 UNP Q5RZ08 GLN 7 ENGINEERED MUTATION SEQADV 6IXD ILE B 33 UNP Q5RZ08 LEU 33 ENGINEERED MUTATION SEQADV 6IXD ILE B 62 UNP Q5RZ08 LEU 63 ENGINEERED MUTATION SEQADV 6IXD ALA B 67 UNP Q5RZ08 CYS 67 ENGINEERED MUTATION SEQADV 6IXD ALA B 95 UNP Q5RZ08 CYS 95 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU SEQRES 6 A 99 ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY ALA THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 B 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO SEQRES 4 B 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU SEQRES 6 B 99 ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 B 99 GLN ILE GLY ALA THR LEU ASN PHE HET GOL A 201 6 HET SO4 A 202 5 HET B0F B 101 122 HET GOL B 102 6 HET GOL B 103 12 HET SO4 B 104 5 HET CL B 105 1 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM B0F (4R)-3-[(2S,3S)-3-[2-[4-[5-[(3AS,4S,6AR)-2- HETNAM 2 B0F OXIDANYLIDENE-1,3,3A,4,6,6A-HEXAHYDROTHIENO[3,4- HETNAM 3 B0F D]IMIDAZOL-4-YL]PENTANOYLAMINO]-2,6-DIMETHYL- HETNAM 4 B0F PHENOXY]ETHANOYLAMINO]-2-OXIDANYL-4-PHENYL-BUTANOYL]- HETNAM 5 B0F 5,5-DIMETHYL-N-[(1S,2R)-2-OXIDANYL-2,3-DIHYDRO-1H- HETNAM 6 B0F INDEN-1-YL]-1,3-THIAZOLIDINE-4-CARBOXAMIDE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 B0F C45 H56 N6 O8 S2 FORMUL 9 CL CL 1- FORMUL 10 HOH *354(H2 O) HELIX 1 AA1 GLY A 86 THR A 91 1 6 HELIX 2 AA2 GLY B 86 THR B 91 1 6 SHEET 1 AA1 4 GLN A 2 ILE A 3 0 SHEET 2 AA1 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 AA1 4 THR A 96 ASN A 98 -1 N ASN A 98 O THR B 96 SHEET 4 AA1 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 AA2 8 TRP A 42 GLY A 49 0 SHEET 2 AA2 8 GLY A 52 ILE A 66 -1 O GLN A 58 N LYS A 43 SHEET 3 AA2 8 HIS A 69 VAL A 77 -1 O HIS A 69 N ILE A 66 SHEET 4 AA2 8 VAL A 32 ILE A 33 1 N ILE A 33 O LEU A 76 SHEET 5 AA2 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 AA2 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 AA2 8 LEU A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 AA2 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 AA3 8 LYS B 43 GLY B 49 0 SHEET 2 AA3 8 GLY B 52 ILE B 66 -1 O GLY B 52 N GLY B 49 SHEET 3 AA3 8 HIS B 69 VAL B 77 -1 O HIS B 69 N ILE B 66 SHEET 4 AA3 8 VAL B 32 ILE B 33 1 N ILE B 33 O LEU B 76 SHEET 5 AA3 8 ILE B 84 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 6 AA3 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 AA3 8 LEU B 10 ILE B 15 -1 N ILE B 13 O LYS B 20 SHEET 8 AA3 8 GLY B 52 ILE B 66 -1 O GLU B 65 N LYS B 14 SITE 1 AC1 6 MET A 46 PHE A 53 B0F B 101 HOH B 206 SITE 2 AC1 6 HOH B 269 HOH B 355 SITE 1 AC2 4 PRO A 1 HIS A 69 HOH A 305 HOH A 326 SITE 1 AC3 42 ARG A 8 LEU A 23 ASP A 25 GLY A 27 SITE 2 AC3 42 ALA A 28 ASP A 29 ASP A 30 VAL A 32 SITE 3 AC3 42 LYS A 45 ILE A 47 GLY A 48 GLY A 49 SITE 4 AC3 42 ILE A 50 PRO A 81 VAL A 82 ILE A 84 SITE 5 AC3 42 GOL A 201 HOH A 302 HOH A 374 HOH A 411 SITE 6 AC3 42 HOH A 412 HOH A 421 LEU B 23 ASP B 25 SITE 7 AC3 42 GLY B 27 ALA B 28 ASP B 29 ASP B 30 SITE 8 AC3 42 VAL B 32 ILE B 47 GLY B 48 GLY B 49 SITE 9 AC3 42 ILE B 50 PRO B 81 VAL B 82 ILE B 84 SITE 10 AC3 42 HOH B 205 HOH B 206 HOH B 225 HOH B 247 SITE 11 AC3 42 HOH B 251 HOH B 275 SITE 1 AC4 9 HOH A 466 GLU B 35 LYS B 55 ARG B 57 SITE 2 AC4 9 VAL B 77 GLY B 78 PRO B 79 HOH B 253 SITE 3 AC4 9 HOH B 300 SITE 1 AC5 11 GLN A 18 MET A 36 SER A 37 THR B 12 SITE 2 AC5 11 ILE B 13 LYS B 14 GLU B 65 ILE B 66 SITE 3 AC5 11 ALA B 67 GLY B 68 HOH B 201 SITE 1 AC6 7 HOH A 337 HOH A 382 HOH A 434 LYS B 14 SITE 2 AC6 7 GLY B 17 HOH B 241 HOH B 252 SITE 1 AC7 4 THR B 4 TRP B 6 LYS B 7 HOH B 351 CRYST1 58.302 86.010 46.549 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021483 0.00000