HEADER HYDROLASE/INIHBITOR 12-DEC-18 6IXX TITLE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PSYCHROPHILIC MARINE PROTEASE TITLE 2 MP AND ITS INHIBITOR LUPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE METALLOPROTEASE; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LUPI; COMPND 6 CHAIN: I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM SP. YS-80-122; SOURCE 3 ORGANISM_COMMON: MARINE BACTERIUM FLAVOBACTERIUM SP. YS-80-122; SOURCE 4 ORGANISM_TAXID: 686394; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM SP. YS-80-122; SOURCE 7 ORGANISM_COMMON: MARINE BACTERIUM FLAVOBACTERIUM SP. YS-80-122; SOURCE 8 ORGANISM_TAXID: 686394 KEYWDS PSYCHROPHILIC MARINE PROTEASE, PROTEIN-PROTEIN COMPLEX, HYDROLASE- KEYWDS 2 INIHBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HAO,L.H.ZHANG REVDAT 2 22-NOV-23 6IXX 1 LINK REVDAT 1 18-DEC-19 6IXX 0 JRNL AUTH J.H.HAO JRNL TITL CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PSYCHROPHILIC MARINE JRNL TITL 2 PROTEASE MP AND ITS INHIBITOR LUPI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 34563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6796 - 4.6981 0.98 2708 138 0.1452 0.1701 REMARK 3 2 4.6981 - 3.7300 0.98 2639 136 0.1442 0.1943 REMARK 3 3 3.7300 - 3.2588 0.98 2650 132 0.1808 0.2235 REMARK 3 4 3.2588 - 2.9609 0.99 2666 130 0.2051 0.2439 REMARK 3 5 2.9609 - 2.7488 1.00 2631 155 0.2063 0.2762 REMARK 3 6 2.7488 - 2.5867 0.97 2576 148 0.2115 0.2438 REMARK 3 7 2.5867 - 2.4572 0.98 2615 120 0.2002 0.2535 REMARK 3 8 2.4572 - 2.3503 0.98 2599 154 0.2058 0.2448 REMARK 3 9 2.3503 - 2.2598 0.98 2611 143 0.2100 0.2416 REMARK 3 10 2.2598 - 2.1818 0.96 2566 117 0.2158 0.2613 REMARK 3 11 2.1818 - 2.1136 0.95 2516 146 0.2109 0.2849 REMARK 3 12 2.1136 - 2.0532 0.86 2255 141 0.2163 0.2821 REMARK 3 13 2.0532 - 1.9991 0.67 1771 100 0.2029 0.2550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.5939 14.2576 24.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.2267 REMARK 3 T33: 0.1854 T12: 0.0548 REMARK 3 T13: -0.0273 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.1979 L22: 1.5198 REMARK 3 L33: 0.2499 L12: 0.2014 REMARK 3 L13: -0.0605 L23: -0.0683 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0138 S13: 0.0387 REMARK 3 S21: -0.4893 S22: -0.0563 S23: 0.0903 REMARK 3 S31: 0.0052 S32: 0.0091 S33: 0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300009319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 17.8130 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U1R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL 0.1M MES 10% PEG 4000, PH REMARK 280 6.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.92600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH I 140 O HOH I 141 1.92 REMARK 500 O HOH I 108 O HOH I 141 1.96 REMARK 500 O HOH I 124 O HOH I 139 1.98 REMARK 500 O HOH A 689 O HOH A 694 2.01 REMARK 500 O HOH A 655 O HOH A 790 2.06 REMARK 500 O HOH A 790 O HOH A 791 2.10 REMARK 500 O HOH I 122 O HOH I 132 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 777 O HOH I 139 1545 1.74 REMARK 500 O ASP A 70 OG SER A 155 2545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 398 89.51 -160.82 REMARK 500 ASP A 408 35.10 -143.90 REMARK 500 LEU A 413 -58.29 -135.15 REMARK 500 ASP I 25 69.44 -110.32 REMARK 500 SER I 70 -46.97 -132.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 ASN A 68 OD1 77.4 REMARK 620 3 ASP A 70 OD1 71.9 74.8 REMARK 620 4 VAL A 72 O 84.9 155.6 83.8 REMARK 620 5 ASN A 74 OD1 169.2 92.0 103.6 104.5 REMARK 620 6 ASP A 131 OD1 99.0 82.6 157.0 117.0 81.5 REMARK 620 7 ASP A 131 OD2 111.1 125.8 159.3 76.2 76.7 43.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 509 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 NE2 REMARK 620 2 HIS A 190 NE2 101.4 REMARK 620 3 HIS A 196 NE2 104.7 101.7 REMARK 620 4 HOH A 628 O 119.7 107.4 119.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 267 O REMARK 620 2 GLY A 269 O 92.0 REMARK 620 3 THR A 271 OG1 87.0 79.2 REMARK 620 4 ASP A 299 OD1 81.5 148.0 131.1 REMARK 620 5 ASP A 299 OD2 86.3 159.0 79.8 52.3 REMARK 620 6 GLY A 301 O 83.9 78.3 155.4 69.9 122.2 REMARK 620 7 ASP A 304 OD1 172.3 90.2 86.2 100.4 89.0 103.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 302 O REMARK 620 2 ASP A 304 OD2 79.1 REMARK 620 3 THR A 341 O 170.1 100.4 REMARK 620 4 GLU A 343 OE1 85.8 86.1 84.3 REMARK 620 5 GLU A 343 OE2 91.1 137.4 82.6 51.6 REMARK 620 6 HOH A 708 O 108.3 77.7 81.1 155.8 143.6 REMARK 620 7 HOH A 776 O 87.3 141.7 98.8 128.7 77.8 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 348 O REMARK 620 2 GLY A 350 O 99.4 REMARK 620 3 ASP A 352 OD2 82.8 84.3 REMARK 620 4 GLY A 365 O 83.2 176.9 94.3 REMARK 620 5 ALA A 367 O 84.3 82.0 159.3 100.1 REMARK 620 6 ASP A 370 OD1 166.5 82.6 84.2 94.4 109.2 REMARK 620 7 ASP A 370 OD2 141.7 110.2 122.9 68.2 76.6 46.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 357 O REMARK 620 2 ALA A 359 O 87.1 REMARK 620 3 ASN A 361 OD1 86.6 77.6 REMARK 620 4 GLY A 374 O 86.8 161.2 84.3 REMARK 620 5 GLY A 376 O 86.8 89.6 165.8 107.9 REMARK 620 6 ASP A 379 OD1 166.1 81.3 83.5 101.7 100.6 REMARK 620 7 ASP A 379 OD2 145.3 125.7 109.3 65.3 83.0 48.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 366 O REMARK 620 2 GLY A 368 O 108.4 REMARK 620 3 ASP A 370 OD2 84.7 78.7 REMARK 620 4 GLY A 383 O 82.3 165.2 92.5 REMARK 620 5 SER A 385 O 92.9 79.0 155.5 111.4 REMARK 620 6 ASP A 388 OD1 159.1 84.4 81.8 82.5 105.9 REMARK 620 7 ASP A 388 OD2 134.7 111.9 122.4 62.8 75.8 46.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 375 O REMARK 620 2 GLY A 377 O 102.1 REMARK 620 3 ASP A 379 OD2 90.3 87.9 REMARK 620 4 ASP A 397 O 85.3 82.7 168.5 REMARK 620 5 ASP A 404 OD1 171.6 86.3 91.1 94.8 REMARK 620 6 HOH A 605 O 83.4 174.1 89.8 100.1 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 384 O REMARK 620 2 GLY A 386 O 112.2 REMARK 620 3 ASP A 388 OD2 82.4 84.3 REMARK 620 4 GLN A 410 OE1 90.8 93.5 171.4 REMARK 620 5 ASP A 414 OD1 161.5 83.2 89.5 98.5 REMARK 620 6 HOH A 610 O 84.4 161.1 89.5 95.1 78.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 509 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT THE SEQUENCE G3MEU6 MAY HAVE ERRORS IN REMARK 999 SEQUENCING, AND THIS TIME THE SEQUENCE IS RE-SEQUENCE VERIFIED TO REMARK 999 BE LEU. DBREF 6IXX A 18 480 UNP D0VMS8 D0VMS8_9FLAO 18 480 DBREF 6IXX I 2 98 UNP G3MEU6 G3MEU6_9FLAO 19 115 SEQADV 6IXX LEU I 31 UNP G3MEU6 SER 48 SEE SEQUENCE DETAILS SEQRES 1 A 463 ALA ASN GLY THR SER SER ALA PHE THR GLN VAL ASP ASN SEQRES 2 A 463 PHE SER HIS PHE TYR ASP ARG GLY ASN HIS LEU VAL ASN SEQRES 3 A 463 GLY LYS PRO SER PHE THR VAL ASP GLN ALA ALA ASP GLN SEQRES 4 A 463 LEU THR ARG SER GLY ALA SER TRP TYR ASP LEU ASN GLY SEQRES 5 A 463 ASP GLY VAL ILE ASN LEU SER TYR THR PHE LEU THR SER SEQRES 6 A 463 PRO PRO PRO GLY TYR ALA SER ARG GLY LEU GLY THR PHE SEQRES 7 A 463 SER SER PHE SER GLY LEU GLN LYS GLU GLN ALA LYS LEU SEQRES 8 A 463 SER LEU GLU SER TRP ALA ASP VAL ALA LYS VAL THR PHE SEQRES 9 A 463 THR GLU GLY PRO ALA ALA ARG GLY ASP ASP GLY HIS MET SEQRES 10 A 463 THR PHE ALA ASN PHE SER ALA SER ASN GLY GLY ALA ALA SEQRES 11 A 463 PHE ALA TYR LEU PRO ASN SER SER ARG LYS GLY GLU SER SEQRES 12 A 463 TRP TYR LEU ILE ASN LYS ASP TYR ASP VAL ASN LYS THR SEQRES 13 A 463 PRO GLY GLU GLY ASN TYR GLY ARG GLN THR LEU THR HIS SEQRES 14 A 463 GLU ILE GLY HIS THR LEU GLY LEU SER HIS PRO GLY ASP SEQRES 15 A 463 TYR ASN ALA GLY ASN GLY ASN PRO SER TYR ARG ASP ALA SEQRES 16 A 463 VAL TYR GLY GLU ASP THR ARG ALA TYR SER VAL MET SER SEQRES 17 A 463 TYR TRP SER GLU LYS ASN THR GLY GLN VAL PHE THR LYS SEQRES 18 A 463 THR GLY GLU GLY ALA TYR ALA SER ALA PRO LEU LEU ASP SEQRES 19 A 463 ASP ILE ALA ALA VAL GLN LYS LEU TYR GLY ALA ASN MET SEQRES 20 A 463 GLU THR ARG ALA GLY ASP THR VAL TYR GLY PHE ASN SER SEQRES 21 A 463 THR ALA ASP ARG ASP TYR TYR SER ALA THR SER ALA THR SEQRES 22 A 463 ASP LYS LEU ILE PHE SER VAL TRP ASP GLY GLY GLY ASN SEQRES 23 A 463 ASP THR LEU ASP PHE SER GLY PHE SER GLN ASN GLN LYS SEQRES 24 A 463 ILE ASN LEU ALA ALA GLY SER PHE SER ASP VAL GLY GLY SEQRES 25 A 463 MET THR GLY ASN VAL SER ILE ALA GLN GLY VAL THR ILE SEQRES 26 A 463 GLU ASN ALA ILE GLY GLY SER GLY ASN ASP LEU LEU LEU SEQRES 27 A 463 GLY ASN ALA ALA SER ASN ILE LEU LYS GLY GLY ALA GLY SEQRES 28 A 463 ASN ASP ILE ILE TYR GLY GLY GLY GLY ALA ASP LYS LEU SEQRES 29 A 463 TRP GLY GLY SER GLY SER ASP THR PHE VAL TYR ARG GLU SEQRES 30 A 463 VAL SER ASP SER THR PRO LYS ALA ALA ASP THR LEU MET SEQRES 31 A 463 ASP PHE GLN THR GLY LEU ASP LYS ILE ASP LEU THR GLY SEQRES 32 A 463 ILE THR HIS LEU SER GLY LEU ASN PHE VAL ASN ALA PHE SEQRES 33 A 463 THR GLY GLN ALA GLY ASP ALA VAL VAL SER TYR ASN GLN SEQRES 34 A 463 ALA SER ASN ALA GLY SER LEU GLN VAL ASP PHE SER GLY SEQRES 35 A 463 HIS GLY VAL ALA ASP PHE LEU ILE THR THR VAL GLY GLN SEQRES 36 A 463 VAL ALA THR TYR ASP ILE VAL ALA SEQRES 1 I 97 SER LEU MET LEU LEU SER PRO ALA GLN VAL ALA GLY SER SEQRES 2 I 97 TRP THR PHE TYR VAL GLN GLY ALA GLU GLN ASP ALA CYS SEQRES 3 I 97 THR VAL THR LEU LYS LYS ASP ARG THR PHE SER ALA GLN SEQRES 4 I 97 VAL SER CYS LEU GLN ALA TRP LEU GLY ARG THR PRO THR SEQRES 5 I 97 THR TRP SER PRO THR PRO ASP GLY LEU LEU LEU ILE GLY SEQRES 6 I 97 LYS ASP GLY SER GLN SER LEU PHE LEU GLU LEU ARG GLU SEQRES 7 I 97 ALA GLY ARG TYR GLU GLY SER VAL GLU GLY SER LYS THR SEQRES 8 I 97 LEU VAL MET GLN ARG ALA HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HET ZN A 509 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 3 CA 8(CA 2+) FORMUL 11 ZN ZN 2+ FORMUL 12 HOH *244(H2 O) HELIX 1 AA1 SER A 22 PHE A 34 1 13 HELIX 2 AA2 THR A 49 THR A 58 1 10 HELIX 3 AA3 TYR A 87 GLY A 91 5 5 HELIX 4 AA4 SER A 99 ASP A 115 1 17 HELIX 5 AA5 ASP A 169 THR A 173 5 5 HELIX 6 AA6 ASN A 178 GLY A 193 1 16 HELIX 7 AA7 SER A 208 ALA A 212 5 5 HELIX 8 AA8 SER A 228 GLY A 233 5 6 HELIX 9 AA9 LEU A 249 GLY A 261 1 13 HELIX 10 AB1 ARG A 281 SER A 285 5 5 HELIX 11 AB2 GLU A 394 SER A 398 5 5 HELIX 12 AB3 LEU A 418 HIS A 423 1 6 HELIX 13 AB4 GLN A 446 SER A 448 5 3 HELIX 14 AB5 ALA A 474 TYR A 476 5 3 HELIX 15 AB6 SER I 7 ALA I 12 1 6 HELIX 16 AB7 SER I 38 CYS I 43 5 6 HELIX 17 AB8 LEU I 44 GLY I 49 1 6 SHEET 1 AA1 2 LEU A 41 VAL A 42 0 SHEET 2 AA1 2 LYS A 45 PRO A 46 -1 O LYS A 45 N VAL A 42 SHEET 1 AA2 5 VAL A 119 GLU A 123 0 SHEET 2 AA2 5 ILE A 73 PHE A 79 1 N ILE A 73 O THR A 120 SHEET 3 AA2 5 GLY A 132 PHE A 139 1 O GLY A 132 N SER A 76 SHEET 4 AA2 5 GLU A 159 LEU A 163 1 O SER A 160 N THR A 135 SHEET 5 AA2 5 ALA A 147 ALA A 149 -1 N PHE A 148 O TRP A 161 SHEET 1 AA3 7 VAL A 272 GLY A 274 0 SHEET 2 AA3 7 THR A 305 ASP A 307 1 O ASP A 307 N TYR A 273 SHEET 3 AA3 7 ASN A 344 ILE A 346 1 O ILE A 346 N LEU A 306 SHEET 4 AA3 7 ILE A 362 LYS A 364 1 O LYS A 364 N ALA A 345 SHEET 5 AA3 7 LYS A 380 TRP A 382 1 O TRP A 382 N LEU A 363 SHEET 6 AA3 7 ASP A 404 LEU A 406 1 O THR A 405 N LEU A 381 SHEET 7 AA3 7 PHE A 465 VAL A 470 1 O VAL A 470 N LEU A 406 SHEET 1 AA4 3 PHE A 295 VAL A 297 0 SHEET 2 AA4 3 VAL A 334 ILE A 336 1 O SER A 335 N VAL A 297 SHEET 3 AA4 3 PHE A 324 SER A 325 -1 N SER A 325 O VAL A 334 SHEET 1 AA5 6 LYS A 316 ASN A 318 0 SHEET 2 AA5 6 LEU A 353 LEU A 355 1 O LEU A 353 N ILE A 317 SHEET 3 AA5 6 ILE A 371 TYR A 373 1 O ILE A 371 N LEU A 354 SHEET 4 AA5 6 THR A 389 VAL A 391 1 O VAL A 391 N ILE A 372 SHEET 5 AA5 6 LYS A 415 ASP A 417 1 O ASP A 417 N PHE A 390 SHEET 6 AA5 6 ILE A 478 VAL A 479 1 O VAL A 479 N ILE A 416 SHEET 1 AA6 3 ASN A 428 PHE A 429 0 SHEET 2 AA6 3 ASP A 439 ASN A 445 1 O ALA A 440 N ASN A 428 SHEET 3 AA6 3 ALA A 450 ASP A 456 -1 O ALA A 450 N ASN A 445 SHEET 1 AA7 7 CYS I 27 LEU I 31 0 SHEET 2 AA7 7 GLY I 13 VAL I 19 -1 N PHE I 17 O CYS I 27 SHEET 3 AA7 7 LYS I 91 ARG I 97 -1 O VAL I 94 N TYR I 18 SHEET 4 AA7 7 ARG I 82 VAL I 87 -1 N GLY I 85 O LEU I 93 SHEET 5 AA7 7 SER I 72 GLU I 79 -1 N ARG I 78 O ARG I 82 SHEET 6 AA7 7 GLY I 61 ILE I 65 -1 N LEU I 62 O LEU I 75 SHEET 7 AA7 7 THR I 54 THR I 58 -1 N THR I 54 O ILE I 65 SSBOND 1 CYS I 27 CYS I 43 1555 1555 2.06 LINK OD1 ASP A 66 CA CA A 508 1555 1555 2.43 LINK OD1 ASN A 68 CA CA A 508 1555 1555 2.26 LINK OD1 ASP A 70 CA CA A 508 1555 1555 2.47 LINK O VAL A 72 CA CA A 508 1555 1555 2.30 LINK OD1 ASN A 74 CA CA A 508 1555 1555 2.59 LINK OD1 ASP A 131 CA CA A 508 1555 1555 3.18 LINK OD2 ASP A 131 CA CA A 508 1555 1555 2.36 LINK NE2 HIS A 186 ZN ZN A 509 1555 1555 2.03 LINK NE2 HIS A 190 ZN ZN A 509 1555 1555 2.00 LINK NE2 HIS A 196 ZN ZN A 509 1555 1555 2.04 LINK O ARG A 267 CA CA A 506 1555 1555 2.35 LINK O GLY A 269 CA CA A 506 1555 1555 2.29 LINK OG1 THR A 271 CA CA A 506 1555 1555 2.61 LINK OD1 ASP A 299 CA CA A 506 1555 1555 2.61 LINK OD2 ASP A 299 CA CA A 506 1555 1555 2.40 LINK O GLY A 301 CA CA A 506 1555 1555 2.28 LINK O GLY A 302 CA CA A 507 1555 1555 2.23 LINK OD1 ASP A 304 CA CA A 506 1555 1555 2.25 LINK OD2 ASP A 304 CA CA A 507 1555 1555 2.48 LINK O THR A 341 CA CA A 507 1555 1555 2.42 LINK OE1 GLU A 343 CA CA A 507 1555 1555 2.60 LINK OE2 GLU A 343 CA CA A 507 1555 1555 2.42 LINK O GLY A 348 CA CA A 503 1555 1555 2.32 LINK O GLY A 350 CA CA A 503 1555 1555 2.37 LINK OD2 ASP A 352 CA CA A 503 1555 1555 2.38 LINK O ASN A 357 CA CA A 502 1555 1555 2.47 LINK O ALA A 359 CA CA A 502 1555 1555 2.42 LINK OD1 ASN A 361 CA CA A 502 1555 1555 2.40 LINK O GLY A 365 CA CA A 503 1555 1555 2.41 LINK O GLY A 366 CA CA A 501 1555 1555 2.30 LINK O ALA A 367 CA CA A 503 1555 1555 2.37 LINK O GLY A 368 CA CA A 501 1555 1555 2.32 LINK OD2 ASP A 370 CA CA A 501 1555 1555 2.35 LINK OD1 ASP A 370 CA CA A 503 1555 1555 2.32 LINK OD2 ASP A 370 CA CA A 503 1555 1555 3.02 LINK O GLY A 374 CA CA A 502 1555 1555 2.41 LINK O GLY A 375 CA CA A 504 1555 1555 2.37 LINK O GLY A 376 CA CA A 502 1555 1555 2.36 LINK O GLY A 377 CA CA A 504 1555 1555 2.37 LINK OD1 ASP A 379 CA CA A 502 1555 1555 2.39 LINK OD2 ASP A 379 CA CA A 502 1555 1555 2.88 LINK OD2 ASP A 379 CA CA A 504 1555 1555 2.43 LINK O GLY A 383 CA CA A 501 1555 1555 2.44 LINK O GLY A 384 CA CA A 505 1555 1555 2.35 LINK O SER A 385 CA CA A 501 1555 1555 2.40 LINK O GLY A 386 CA CA A 505 1555 1555 2.36 LINK OD1 ASP A 388 CA CA A 501 1555 1555 2.38 LINK OD2 ASP A 388 CA CA A 501 1555 1555 3.01 LINK OD2 ASP A 388 CA CA A 505 1555 1555 2.34 LINK O ASP A 397 CA CA A 504 1555 1555 2.27 LINK OD1 ASP A 404 CA CA A 504 1555 1555 2.47 LINK OE1 GLN A 410 CA CA A 505 1555 1555 2.16 LINK OD1 ASP A 414 CA CA A 505 1555 1555 2.62 LINK CA CA A 504 O HOH A 605 1555 1555 2.39 LINK CA CA A 505 O HOH A 610 1555 1555 2.46 LINK CA CA A 507 O HOH A 708 1555 1555 2.40 LINK CA CA A 507 O HOH A 776 1555 1555 2.49 LINK ZN ZN A 509 O HOH A 628 1555 1555 2.09 SITE 1 AC1 6 GLY A 366 GLY A 368 ASP A 370 GLY A 383 SITE 2 AC1 6 SER A 385 ASP A 388 SITE 1 AC2 6 ASN A 357 ALA A 359 ASN A 361 GLY A 374 SITE 2 AC2 6 GLY A 376 ASP A 379 SITE 1 AC3 6 GLY A 348 GLY A 350 ASP A 352 GLY A 365 SITE 2 AC3 6 ALA A 367 ASP A 370 SITE 1 AC4 6 GLY A 375 GLY A 377 ASP A 379 ASP A 397 SITE 2 AC4 6 ASP A 404 HOH A 605 SITE 1 AC5 6 GLY A 384 GLY A 386 ASP A 388 GLN A 410 SITE 2 AC5 6 ASP A 414 HOH A 610 SITE 1 AC6 6 ARG A 267 GLY A 269 THR A 271 ASP A 299 SITE 2 AC6 6 GLY A 301 ASP A 304 SITE 1 AC7 6 GLY A 302 ASP A 304 THR A 341 GLU A 343 SITE 2 AC7 6 HOH A 708 HOH A 776 SITE 1 AC8 6 ASP A 66 ASN A 68 ASP A 70 VAL A 72 SITE 2 AC8 6 ASN A 74 ASP A 131 SITE 1 AC9 4 HIS A 186 HIS A 190 HIS A 196 HOH A 628 CRYST1 51.664 51.852 102.142 90.00 97.68 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019356 0.000000 0.002612 0.00000 SCALE2 0.000000 0.019286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009879 0.00000