HEADER TRANSFERASE 14-DEC-18 6IY9 TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 7"-PHOSHOTRANSFERASE-IA (APH(7")- TITLE 2 IA/HYG) FROM STREPTOMYCES HYGROSCOPICUS COMPLEXED WITH HYGROMYCIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYGROMYCIN-B 7''-O-KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMINOGLYCOSIDE PHOSPHOTRANSFERASE 7"-IA, APH(7''),HYGROMYCIN COMPND 5 B PHOSPHOTRANSFERASE,HYGROMYCIN-B KINASE; COMPND 6 EC: 2.7.1.119; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HYGROSCOPICUS; SOURCE 3 ORGANISM_TAXID: 1912; SOURCE 4 GENE: HYG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS KINASE, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.TAKENOYA,T.SHIMAMURA,R.YAMANAKA,Y.ADACHI,S.ITO,Y.SASAKI,A.NAKAMURA, AUTHOR 2 S.YAJIMA REVDAT 2 20-NOV-19 6IY9 1 JRNL REVDAT 1 11-SEP-19 6IY9 0 JRNL AUTH M.TAKENOYA,T.SHIMAMURA,R.YAMANAKA,Y.ADACHI,S.ITO,Y.SASAKI, JRNL AUTH 2 A.NAKAMURA,S.YAJIMA JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE RECOGNITION OF JRNL TITL 2 AMINOGLYCOSIDE 7''-PHOSPHOTRANSFERASE-IA FROM STREPTOMYCES JRNL TITL 3 HYGROSCOPICUS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 75 599 2019 JRNL REFN ESSN 2053-230X JRNL PMID 31475927 JRNL DOI 10.1107/S2053230X19011105 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.4500 - 2.4000 1.00 0 0 0.3290 0.3720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8397 -13.2618 30.3660 REMARK 3 T TENSOR REMARK 3 T11: 1.2455 T22: 0.6335 REMARK 3 T33: 0.7583 T12: -0.0289 REMARK 3 T13: 0.1453 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 5.0676 L22: 6.8976 REMARK 3 L33: 7.7483 L12: 1.1551 REMARK 3 L13: -3.2660 L23: 6.3092 REMARK 3 S TENSOR REMARK 3 S11: -0.8208 S12: 0.7735 S13: -1.0639 REMARK 3 S21: -0.5443 S22: 0.6878 S23: -0.2554 REMARK 3 S31: 0.8663 S32: 0.7675 S33: 0.0990 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5847 -4.4838 46.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.6709 T22: 1.1181 REMARK 3 T33: 0.5458 T12: 0.2059 REMARK 3 T13: 0.2544 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 2.7398 L22: 3.6844 REMARK 3 L33: 5.9554 L12: 0.0536 REMARK 3 L13: 0.6130 L23: -1.4042 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: 0.4326 S13: -0.2557 REMARK 3 S21: -0.4831 S22: -0.3861 S23: -0.6763 REMARK 3 S31: 0.5874 S32: 1.9255 S33: 0.1648 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6743 37.5332 64.4016 REMARK 3 T TENSOR REMARK 3 T11: 2.1664 T22: 1.0462 REMARK 3 T33: 0.6663 T12: 0.3167 REMARK 3 T13: 0.0472 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 9.5196 L22: 6.0958 REMARK 3 L33: 3.3576 L12: 3.0527 REMARK 3 L13: 0.3979 L23: -0.7017 REMARK 3 S TENSOR REMARK 3 S11: 0.4033 S12: 0.1558 S13: 1.5584 REMARK 3 S21: 0.7226 S22: 0.0020 S23: 0.2562 REMARK 3 S31: -1.8323 S32: -0.7656 S33: -0.3520 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3009 27.1269 59.7107 REMARK 3 T TENSOR REMARK 3 T11: 1.5604 T22: 0.6547 REMARK 3 T33: 0.4680 T12: -0.0434 REMARK 3 T13: -0.1344 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.8618 L22: 3.8828 REMARK 3 L33: 1.9435 L12: -0.8989 REMARK 3 L13: -2.3039 L23: -0.7540 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.4063 S13: 0.3931 REMARK 3 S21: 0.0091 S22: -0.0644 S23: 0.0299 REMARK 3 S31: -1.4489 S32: -0.0239 S33: -0.0142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9024 21.1551 67.2464 REMARK 3 T TENSOR REMARK 3 T11: 1.0727 T22: 0.9907 REMARK 3 T33: 0.4721 T12: -0.4145 REMARK 3 T13: -0.1000 T23: 0.0926 REMARK 3 L TENSOR REMARK 3 L11: 3.4443 L22: 2.7877 REMARK 3 L33: 5.3899 L12: 0.2778 REMARK 3 L13: -0.3333 L23: 0.6673 REMARK 3 S TENSOR REMARK 3 S11: -0.1784 S12: -0.4525 S13: 0.2923 REMARK 3 S21: 0.1808 S22: 0.0397 S23: -0.4966 REMARK 3 S31: -1.2967 S32: 1.5422 S33: 0.1319 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 6IY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 62.70 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 64.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES, PH 8.8, 1.38-1.40 M SODIUM REMARK 280 CITRATE TRIBASIC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 THR A 328 REMARK 465 ALA A 329 REMARK 465 PRO A 330 REMARK 465 GLY A 331 REMARK 465 ALA A 332 REMARK 465 LEU A 333 REMARK 465 GLU A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 THR B 328 REMARK 465 ALA B 329 REMARK 465 PRO B 330 REMARK 465 GLY B 331 REMARK 465 ALA B 332 REMARK 465 LEU B 333 REMARK 465 GLU B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 72 -63.21 -92.44 REMARK 500 PRO A 93 46.80 -77.98 REMARK 500 THR A 109 -60.51 -104.63 REMARK 500 ASP A 223 46.23 -140.80 REMARK 500 ASP A 243 81.20 58.71 REMARK 500 PRO A 306 46.84 -77.61 REMARK 500 ASP A 314 78.18 60.44 REMARK 500 PRO A 315 -19.20 -45.80 REMARK 500 ARG B 11 4.35 -69.64 REMARK 500 GLU B 52 -7.87 73.69 REMARK 500 HIS B 72 -60.88 -100.25 REMARK 500 CYS B 74 16.89 -142.75 REMARK 500 THR B 109 -168.78 -104.07 REMARK 500 TRP B 114 72.55 52.77 REMARK 500 LEU B 165 62.91 -100.19 REMARK 500 ASP B 223 45.06 -140.51 REMARK 500 PRO B 306 47.48 -79.07 REMARK 500 ASP B 314 78.45 60.22 REMARK 500 PRO B 315 -18.38 -45.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HY0 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HY0 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE B 403 DBREF 6IY9 A 1 332 UNP P09979 KHYB_STRHY 1 332 DBREF 6IY9 B 1 332 UNP P09979 KHYB_STRHY 1 332 SEQADV 6IY9 GLY A 63 UNP P09979 ASP 63 ENGINEERED MUTATION SEQADV 6IY9 LEU A 333 UNP P09979 EXPRESSION TAG SEQADV 6IY9 GLU A 334 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS A 335 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS A 336 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS A 337 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS A 338 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS A 339 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS A 340 UNP P09979 EXPRESSION TAG SEQADV 6IY9 GLY B 63 UNP P09979 ASP 63 ENGINEERED MUTATION SEQADV 6IY9 LEU B 333 UNP P09979 EXPRESSION TAG SEQADV 6IY9 GLU B 334 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS B 335 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS B 336 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS B 337 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS B 338 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS B 339 UNP P09979 EXPRESSION TAG SEQADV 6IY9 HIS B 340 UNP P09979 EXPRESSION TAG SEQRES 1 A 340 MSE THR GLN GLU SER LEU LEU LEU LEU ASP ARG ILE ASP SEQRES 2 A 340 SER ASP ASP SER TYR ALA SER LEU ARG ASN ASP GLN GLU SEQRES 3 A 340 PHE TRP GLU PRO LEU ALA ARG ARG ALA LEU GLU GLU LEU SEQRES 4 A 340 GLY LEU PRO VAL PRO PRO VAL LEU ARG VAL PRO GLY GLU SEQRES 5 A 340 SER THR ASN PRO VAL LEU VAL GLY GLU PRO GLY PRO VAL SEQRES 6 A 340 ILE LYS LEU PHE GLY GLU HIS TRP CYS GLY PRO GLU SER SEQRES 7 A 340 LEU ALA SER GLU SER GLU ALA TYR ALA VAL LEU ALA ASP SEQRES 8 A 340 ALA PRO VAL PRO VAL PRO ARG LEU LEU GLY ARG GLY GLU SEQRES 9 A 340 LEU ARG PRO GLY THR GLY ALA TRP PRO TRP PRO TYR LEU SEQRES 10 A 340 VAL MSE SER ARG MSE THR GLY THR THR TRP ARG SER ALA SEQRES 11 A 340 MSE ASP GLY THR THR ASP ARG ASN ALA LEU LEU ALA LEU SEQRES 12 A 340 ALA ARG GLU LEU GLY ARG VAL LEU GLY ARG LEU HIS ARG SEQRES 13 A 340 VAL PRO LEU THR GLY ASN THR VAL LEU THR PRO HIS SER SEQRES 14 A 340 GLU VAL PHE PRO GLU LEU LEU ARG GLU ARG ARG ALA ALA SEQRES 15 A 340 THR VAL GLU ASP HIS ARG GLY TRP GLY TYR LEU SER PRO SEQRES 16 A 340 ARG LEU LEU ASP ARG LEU GLU ASP TRP LEU PRO ASP VAL SEQRES 17 A 340 ASP THR LEU LEU ALA GLY ARG GLU PRO ARG PHE VAL HIS SEQRES 18 A 340 GLY ASP LEU HIS GLY THR ASN ILE PHE VAL ASP LEU ALA SEQRES 19 A 340 ALA THR GLU VAL THR GLY ILE VAL ASP PHE THR ASP VAL SEQRES 20 A 340 TYR ALA GLY ASP SER ARG TYR SER LEU VAL GLN LEU HIS SEQRES 21 A 340 LEU ASN ALA PHE ARG GLY ASP ARG GLU ILE LEU ALA ALA SEQRES 22 A 340 LEU LEU ASP GLY ALA GLN TRP LYS ARG THR GLU ASP PHE SEQRES 23 A 340 ALA ARG GLU LEU LEU ALA PHE THR PHE LEU HIS ASP PHE SEQRES 24 A 340 GLU VAL PHE GLU GLU THR PRO LEU ASP LEU SER GLY PHE SEQRES 25 A 340 THR ASP PRO GLU GLU LEU ALA GLN PHE LEU TRP GLY PRO SEQRES 26 A 340 PRO ASP THR ALA PRO GLY ALA LEU GLU HIS HIS HIS HIS SEQRES 27 A 340 HIS HIS SEQRES 1 B 340 MSE THR GLN GLU SER LEU LEU LEU LEU ASP ARG ILE ASP SEQRES 2 B 340 SER ASP ASP SER TYR ALA SER LEU ARG ASN ASP GLN GLU SEQRES 3 B 340 PHE TRP GLU PRO LEU ALA ARG ARG ALA LEU GLU GLU LEU SEQRES 4 B 340 GLY LEU PRO VAL PRO PRO VAL LEU ARG VAL PRO GLY GLU SEQRES 5 B 340 SER THR ASN PRO VAL LEU VAL GLY GLU PRO GLY PRO VAL SEQRES 6 B 340 ILE LYS LEU PHE GLY GLU HIS TRP CYS GLY PRO GLU SER SEQRES 7 B 340 LEU ALA SER GLU SER GLU ALA TYR ALA VAL LEU ALA ASP SEQRES 8 B 340 ALA PRO VAL PRO VAL PRO ARG LEU LEU GLY ARG GLY GLU SEQRES 9 B 340 LEU ARG PRO GLY THR GLY ALA TRP PRO TRP PRO TYR LEU SEQRES 10 B 340 VAL MSE SER ARG MSE THR GLY THR THR TRP ARG SER ALA SEQRES 11 B 340 MSE ASP GLY THR THR ASP ARG ASN ALA LEU LEU ALA LEU SEQRES 12 B 340 ALA ARG GLU LEU GLY ARG VAL LEU GLY ARG LEU HIS ARG SEQRES 13 B 340 VAL PRO LEU THR GLY ASN THR VAL LEU THR PRO HIS SER SEQRES 14 B 340 GLU VAL PHE PRO GLU LEU LEU ARG GLU ARG ARG ALA ALA SEQRES 15 B 340 THR VAL GLU ASP HIS ARG GLY TRP GLY TYR LEU SER PRO SEQRES 16 B 340 ARG LEU LEU ASP ARG LEU GLU ASP TRP LEU PRO ASP VAL SEQRES 17 B 340 ASP THR LEU LEU ALA GLY ARG GLU PRO ARG PHE VAL HIS SEQRES 18 B 340 GLY ASP LEU HIS GLY THR ASN ILE PHE VAL ASP LEU ALA SEQRES 19 B 340 ALA THR GLU VAL THR GLY ILE VAL ASP PHE THR ASP VAL SEQRES 20 B 340 TYR ALA GLY ASP SER ARG TYR SER LEU VAL GLN LEU HIS SEQRES 21 B 340 LEU ASN ALA PHE ARG GLY ASP ARG GLU ILE LEU ALA ALA SEQRES 22 B 340 LEU LEU ASP GLY ALA GLN TRP LYS ARG THR GLU ASP PHE SEQRES 23 B 340 ALA ARG GLU LEU LEU ALA PHE THR PHE LEU HIS ASP PHE SEQRES 24 B 340 GLU VAL PHE GLU GLU THR PRO LEU ASP LEU SER GLY PHE SEQRES 25 B 340 THR ASP PRO GLU GLU LEU ALA GLN PHE LEU TRP GLY PRO SEQRES 26 B 340 PRO ASP THR ALA PRO GLY ALA LEU GLU HIS HIS HIS HIS SEQRES 27 B 340 HIS HIS MODRES 6IY9 MSE A 119 MET MODIFIED RESIDUE MODRES 6IY9 MSE A 122 MET MODIFIED RESIDUE MODRES 6IY9 MSE A 131 MET MODIFIED RESIDUE MODRES 6IY9 MSE B 119 MET MODIFIED RESIDUE MODRES 6IY9 MSE B 122 MET MODIFIED RESIDUE MODRES 6IY9 MSE B 131 MET MODIFIED RESIDUE HET MSE A 119 8 HET MSE A 122 8 HET MSE A 131 8 HET MSE B 119 8 HET MSE B 122 8 HET MSE B 131 8 HET HY0 A 401 36 HET NHE A 402 13 HET FLC A 403 13 HET HY0 B 401 36 HET FLC B 402 13 HET NHE B 403 13 HETNAM MSE SELENOMETHIONINE HETNAM HY0 HYGROMYCIN B VARIANT HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM FLC CITRATE ANION HETSYN HY0 (2R,3'R,3AS,4S,4'S,5'R,6R,6'R,7S,7AS)-4-[(1R,2S,3R,5S, HETSYN 2 HY0 6R)-3-AZANYL-2,6-DIHYDROXY-5-(METHYLAMINO) HETSYN 3 HY0 CYCLOHEXYL]OXY-6'-[(1S)-1-AZANYL-2-HYDROXY-ETHYL]-6- HETSYN 4 HY0 (HYDROXYMETHYL)SPIRO[4,6,7,7A-TETRAHYDRO-3AH-[1, HETSYN 5 HY0 3]DIOXOLO[4,5-C]PYRAN-2,2'-OXANE]-3',4',5',7-TETROL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HY0 2(C20 H37 N3 O13) FORMUL 4 NHE 2(C8 H17 N O3 S) FORMUL 5 FLC 2(C6 H5 O7 3-) FORMUL 9 HOH *21(H2 O) HELIX 1 AA1 GLN A 3 ARG A 11 1 9 HELIX 2 AA2 SER A 14 ARG A 22 1 9 HELIX 3 AA3 ASP A 24 LEU A 39 1 16 HELIX 4 AA4 CYS A 74 LEU A 89 1 16 HELIX 5 AA5 TRP A 127 GLY A 133 1 7 HELIX 6 AA6 ASP A 136 ARG A 156 1 21 HELIX 7 AA7 GLU A 170 GLY A 191 1 22 HELIX 8 AA8 SER A 194 LEU A 205 1 12 HELIX 9 AA9 ASP A 207 LEU A 212 1 6 HELIX 10 AB1 ASP A 251 ASN A 262 1 12 HELIX 11 AB2 ASP A 267 ALA A 278 1 12 HELIX 12 AB3 ASP A 285 LEU A 296 1 12 HELIX 13 AB4 GLU A 300 THR A 305 5 6 HELIX 14 AB5 ASP A 314 GLY A 324 1 11 HELIX 15 AB6 SER B 5 ARG B 11 1 7 HELIX 16 AB7 ASP B 15 LEU B 21 5 7 HELIX 17 AB8 ASP B 24 LEU B 39 1 16 HELIX 18 AB9 CYS B 74 LEU B 89 1 16 HELIX 19 AC1 TRP B 127 THR B 134 1 8 HELIX 20 AC2 ASP B 136 ARG B 156 1 21 HELIX 21 AC3 GLU B 170 GLY B 191 1 22 HELIX 22 AC4 SER B 194 LEU B 205 1 12 HELIX 23 AC5 ASP B 207 LEU B 212 1 6 HELIX 24 AC6 ASP B 251 ASN B 262 1 12 HELIX 25 AC7 ASP B 267 ALA B 278 1 12 HELIX 26 AC8 ASP B 285 LEU B 296 1 12 HELIX 27 AC9 ASP B 314 GLY B 324 1 11 SHEET 1 AA1 5 LEU A 47 ARG A 48 0 SHEET 2 AA1 5 VAL A 57 GLY A 60 -1 O VAL A 59 N ARG A 48 SHEET 3 AA1 5 VAL A 65 LEU A 68 -1 O ILE A 66 N LEU A 58 SHEET 4 AA1 5 PRO A 115 MSE A 119 -1 O LEU A 117 N LYS A 67 SHEET 5 AA1 5 LEU A 99 GLU A 104 -1 N LEU A 100 O VAL A 118 SHEET 1 AA2 3 THR A 125 THR A 126 0 SHEET 2 AA2 3 ILE A 229 ASP A 232 -1 O VAL A 231 N THR A 125 SHEET 3 AA2 3 GLU A 237 ILE A 241 -1 O GLU A 237 N ASP A 232 SHEET 1 AA3 2 ARG A 218 HIS A 221 0 SHEET 2 AA3 2 VAL A 247 GLY A 250 -1 O TYR A 248 N VAL A 220 SHEET 1 AA4 5 LEU B 47 ARG B 48 0 SHEET 2 AA4 5 VAL B 57 GLY B 60 -1 O VAL B 59 N ARG B 48 SHEET 3 AA4 5 VAL B 65 LEU B 68 -1 O ILE B 66 N LEU B 58 SHEET 4 AA4 5 PRO B 115 MSE B 119 -1 O LEU B 117 N LYS B 67 SHEET 5 AA4 5 LEU B 99 GLU B 104 -1 N LEU B 100 O VAL B 118 SHEET 1 AA5 3 THR B 125 THR B 126 0 SHEET 2 AA5 3 ILE B 229 ASP B 232 -1 O VAL B 231 N THR B 125 SHEET 3 AA5 3 GLU B 237 ILE B 241 -1 O GLU B 237 N ASP B 232 SHEET 1 AA6 2 ARG B 218 HIS B 221 0 SHEET 2 AA6 2 VAL B 247 GLY B 250 -1 O TYR B 248 N VAL B 220 LINK C VAL A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N SER A 120 1555 1555 1.33 LINK C ARG A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N THR A 123 1555 1555 1.33 LINK C ALA A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ASP A 132 1555 1555 1.34 LINK C VAL B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N SER B 120 1555 1555 1.33 LINK C ARG B 121 N MSE B 122 1555 1555 1.32 LINK C MSE B 122 N THR B 123 1555 1555 1.33 LINK C ALA B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N ASP B 132 1555 1555 1.33 SITE 1 AC1 12 THR A 54 TRP A 73 CYS A 74 GLU A 77 SITE 2 AC1 12 SER A 78 ASP A 223 THR A 245 ASP A 246 SITE 3 AC1 12 ASP A 298 PHE A 299 GLU A 300 GLU A 303 SITE 1 AC2 8 SER A 53 THR A 54 ASN A 55 VAL A 57 SITE 2 AC2 8 LYS A 67 VAL A 242 ASP A 243 THR A 245 SITE 1 AC3 8 HIS A 155 ARG A 156 ARG A 215 ARG A 218 SITE 2 AC3 8 SER A 252 HOH A 507 GLN B 279 LYS B 281 SITE 1 AC4 12 THR B 54 CYS B 74 GLU B 77 SER B 78 SITE 2 AC4 12 ASP B 223 HIS B 225 THR B 245 ASP B 246 SITE 3 AC4 12 ASP B 298 PHE B 299 GLU B 300 GLU B 303 SITE 1 AC5 9 ARG A 156 GLN A 279 LYS A 281 HIS B 155 SITE 2 AC5 9 ARG B 156 ARG B 215 ARG B 218 SER B 252 SITE 3 AC5 9 TRP B 280 SITE 1 AC6 7 LEU B 89 ALA B 90 ALA B 92 PRO B 93 SITE 2 AC6 7 VAL B 94 PRO B 95 VAL B 96 CRYST1 151.590 151.590 151.590 90.00 90.00 90.00 P 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006597 0.00000