HEADER UNKNOWN FUNCTION 18-DEC-18 6IZ2 TITLE CRYSTAL STRUCTURE OF DINB/YFIT PROTEIN DR0053 FROM D. RADIODURANS R1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DINB/YFIT FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 7 NCIMB 9279 / R1 / VKM B-1422; SOURCE 8 GENE: DR_0053; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DAMAGE RESPONSE, FOUR HELIX BUNDLE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.-K.KIM,J.ZHANG,L.ZHAO REVDAT 2 27-MAR-24 6IZ2 1 LINK REVDAT 1 15-MAY-19 6IZ2 0 JRNL AUTH J.ZHANG,L.ZHAO,H.S.SEO,J.H.JUNG,J.I.CHOI,M.K.KIM,S.LIM JRNL TITL CRYSTAL STRUCTURE OF THE HIGHLY RADIATION-INDUCIBLE JRNL TITL 2 DINB/YFIT SUPERFAMILY PROTEIN DR0053 FROM DEINOCOCCUS JRNL TITL 3 RADIODURANS R1. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 513 354 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 30961930 JRNL DOI 10.1016/J.BBRC.2019.03.209 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0300 - 3.9567 0.99 2527 146 0.1775 0.1862 REMARK 3 2 3.9567 - 3.1410 1.00 2525 124 0.1736 0.2236 REMARK 3 3 3.1410 - 2.7440 1.00 2544 98 0.1932 0.2917 REMARK 3 4 2.7440 - 2.4932 1.00 2489 165 0.1973 0.2446 REMARK 3 5 2.4932 - 2.3145 1.00 2474 153 0.1854 0.2170 REMARK 3 6 2.3145 - 2.1781 1.00 2526 133 0.1825 0.2325 REMARK 3 7 2.1781 - 2.0690 0.99 2458 128 0.1834 0.2767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 35.7393 45.0444 13.9118 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.1452 REMARK 3 T33: 0.1238 T12: 0.0007 REMARK 3 T13: -0.0017 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.1472 L22: 0.1471 REMARK 3 L33: 0.5313 L12: 0.0003 REMARK 3 L13: -0.0187 L23: 0.3008 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.0030 S13: -0.0012 REMARK 3 S21: 0.0080 S22: -0.0417 S23: -0.0194 REMARK 3 S31: -0.0164 S32: 0.2769 S33: 0.0020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28270 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.069 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 37.5330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PH 6.5, ZINC ACETATE, PEG REMARK 280 2000, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.42150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.50600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.42150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.50600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.84300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -270.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.85276 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.89400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 ASP A 75 REMARK 465 GLN A 76 REMARK 465 LYS A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 156 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 ASN A 159 REMARK 465 LEU A 160 REMARK 465 PRO A 161 REMARK 465 PRO A 162 REMARK 465 LEU A 163 REMARK 465 GLY A 164 REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 72 REMARK 465 GLU B 73 REMARK 465 ASN B 74 REMARK 465 ASP B 75 REMARK 465 GLN B 76 REMARK 465 LYS B 77 REMARK 465 LYS B 78 REMARK 465 GLU B 156 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 ASN B 159 REMARK 465 LEU B 160 REMARK 465 PRO B 161 REMARK 465 PRO B 162 REMARK 465 LEU B 163 REMARK 465 GLY B 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 TRP A 71 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 71 CZ3 CH2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 VAL A 104 CG1 CG2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 TYR A 155 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP B 71 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 71 CZ3 CH2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 VAL B 104 CG1 CG2 REMARK 470 SER B 105 OG REMARK 470 PHE B 117 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 TYR B 155 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 69 O HOH B 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 -18.30 -172.64 REMARK 500 PRO B 69 -75.98 -58.80 REMARK 500 THR B 70 104.08 92.67 REMARK 500 MET B 108 55.30 -90.01 REMARK 500 TRP B 109 -34.71 -145.29 REMARK 500 THR B 111 105.43 -59.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 399 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 400 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 401 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH B 500 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 19 NE2 98.2 REMARK 620 3 ASP A 131 OD2 64.9 66.6 REMARK 620 4 HOH A 370 O 124.2 106.8 170.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 ND1 REMARK 620 2 HOH A 368 O 94.6 REMARK 620 3 HOH A 371 O 95.8 149.6 REMARK 620 4 HOH A 375 O 101.4 77.3 72.6 REMARK 620 5 HOH A 378 O 120.9 96.5 102.4 137.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HOH A 348 O 70.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 52 OE2 51.9 REMARK 620 3 HIS A 136 NE2 105.0 90.4 REMARK 620 4 HOH A 303 O 100.1 152.0 100.6 REMARK 620 5 HOH A 359 O 138.5 98.6 103.3 103.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 19 NE2 REMARK 620 2 ASP B 131 OD2 63.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 38 ND1 REMARK 620 2 HOH B 471 O 101.8 REMARK 620 3 HOH B 481 O 123.3 110.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 NE2 REMARK 620 2 HOH B 485 O 113.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE2 REMARK 620 2 HIS B 136 NE2 97.5 REMARK 620 3 HOH B 407 O 99.9 100.3 REMARK 620 4 HOH B 453 O 132.6 111.1 110.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 306 DBREF 6IZ2 A 2 164 UNP Q9RY97 Q9RY97_DEIRA 2 164 DBREF 6IZ2 B 2 164 UNP Q9RY97 Q9RY97_DEIRA 2 164 SEQADV 6IZ2 MET A -5 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS A -4 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS A -3 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS A -2 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS A -1 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS A 0 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS A 1 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 MET B -5 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS B -4 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS B -3 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS B -2 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS B -1 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS B 0 UNP Q9RY97 EXPRESSION TAG SEQADV 6IZ2 HIS B 1 UNP Q9RY97 EXPRESSION TAG SEQRES 1 A 170 MET HIS HIS HIS HIS HIS HIS SER ASP LYS LEU LEU LEU SEQRES 2 A 170 SER PRO ALA GLU LEU LEU ALA HIS TRP GLN GLY HIS ARG SEQRES 3 A 170 ASP LEU THR ARG ARG VAL ILE GLU ALA PHE PRO GLU GLU SEQRES 4 A 170 GLY PHE ALA ALA HIS HIS ALA PRO ASP MET ARG PRO PHE SEQRES 5 A 170 GLN ALA MET ALA CYS GLU LEU ALA GLY MET VAL GLU TYR SEQRES 6 A 170 GLN LEU ASP TRP PHE ARG ARG GLY GLN PRO THR TRP ASP SEQRES 7 A 170 GLU ASN ASP GLN LYS LYS GLU LEU PRO GLY ARG ALA GLU SEQRES 8 A 170 LEU LEU ALA TRP TRP ASP LYS LEU THR ALA GLU LEU GLY SEQRES 9 A 170 ALA GLU VAL PRO GLN VAL SER THR GLU MET TRP ALA THR SEQRES 10 A 170 PRO ALA THR THR PRO PHE GLY LYS MET SER PRO LEU MET SEQRES 11 A 170 SER VAL MET TYR LEU ILE ASP ASN GLU VAL HIS HIS ARG SEQRES 12 A 170 GLY GLN GLY TYR VAL TYR LEU ARG GLU LEU GLY VAL THR SEQRES 13 A 170 PRO PRO ALA PHE TYR GLU ARG ARG ASN LEU PRO PRO LEU SEQRES 14 A 170 GLY SEQRES 1 B 170 MET HIS HIS HIS HIS HIS HIS SER ASP LYS LEU LEU LEU SEQRES 2 B 170 SER PRO ALA GLU LEU LEU ALA HIS TRP GLN GLY HIS ARG SEQRES 3 B 170 ASP LEU THR ARG ARG VAL ILE GLU ALA PHE PRO GLU GLU SEQRES 4 B 170 GLY PHE ALA ALA HIS HIS ALA PRO ASP MET ARG PRO PHE SEQRES 5 B 170 GLN ALA MET ALA CYS GLU LEU ALA GLY MET VAL GLU TYR SEQRES 6 B 170 GLN LEU ASP TRP PHE ARG ARG GLY GLN PRO THR TRP ASP SEQRES 7 B 170 GLU ASN ASP GLN LYS LYS GLU LEU PRO GLY ARG ALA GLU SEQRES 8 B 170 LEU LEU ALA TRP TRP ASP LYS LEU THR ALA GLU LEU GLY SEQRES 9 B 170 ALA GLU VAL PRO GLN VAL SER THR GLU MET TRP ALA THR SEQRES 10 B 170 PRO ALA THR THR PRO PHE GLY LYS MET SER PRO LEU MET SEQRES 11 B 170 SER VAL MET TYR LEU ILE ASP ASN GLU VAL HIS HIS ARG SEQRES 12 B 170 GLY GLN GLY TYR VAL TYR LEU ARG GLU LEU GLY VAL THR SEQRES 13 B 170 PRO PRO ALA PHE TYR GLU ARG ARG ASN LEU PRO PRO LEU SEQRES 14 B 170 GLY HET ACT A 201 4 HET ACT A 202 4 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET ZN A 206 1 HET ACT B 301 4 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 5 ZN 9(ZN 2+) FORMUL 15 HOH *202(H2 O) HELIX 1 AA1 SER A 8 PHE A 30 1 23 HELIX 2 AA2 PRO A 31 HIS A 38 1 8 HELIX 3 AA3 PRO A 45 GLY A 67 1 23 HELIX 4 AA4 GLY A 82 VAL A 101 1 20 HELIX 5 AA5 PRO A 102 VAL A 104 5 3 HELIX 6 AA6 GLU A 107 THR A 111 5 5 HELIX 7 AA7 SER A 121 LEU A 147 1 27 HELIX 8 AA8 SER B 8 PHE B 30 1 23 HELIX 9 AA9 PRO B 31 HIS B 38 1 8 HELIX 10 AB1 PRO B 45 GLY B 67 1 23 HELIX 11 AB2 GLY B 82 VAL B 101 1 20 HELIX 12 AB3 PRO B 102 VAL B 104 5 3 HELIX 13 AB4 THR B 106 THR B 111 1 6 HELIX 14 AB5 SER B 121 LEU B 147 1 27 SHEET 1 AA1 2 ALA A 113 THR A 114 0 SHEET 2 AA1 2 LYS A 119 MET A 120 -1 O MET A 120 N ALA A 113 SHEET 1 AA2 2 ALA B 113 THR B 114 0 SHEET 2 AA2 2 LYS B 119 MET B 120 -1 O MET B 120 N ALA B 113 LINK NE2 HIS A 15 ZN ZN A 205 1555 1555 2.54 LINK NE2 HIS A 19 ZN ZN A 205 1555 1555 2.18 LINK ND1 HIS A 38 ZN ZN A 206 1555 1555 2.23 LINK NE2 HIS A 39 ZN ZN A 203 1555 1555 2.46 LINK OE1 GLU A 52 ZN ZN A 204 1555 1555 2.32 LINK OE2 GLU A 52 ZN ZN A 204 1555 1555 2.64 LINK OD2 ASP A 131 ZN ZN A 205 1555 2655 2.07 LINK NE2 HIS A 136 ZN ZN A 204 1555 1555 2.12 LINK ZN ZN A 203 O HOH A 348 1555 1555 2.62 LINK ZN ZN A 204 O HOH A 303 1555 1555 2.00 LINK ZN ZN A 204 O HOH A 359 1555 1555 2.17 LINK ZN ZN A 205 O HOH A 370 1555 1555 2.26 LINK ZN ZN A 206 O HOH A 368 1555 1555 2.33 LINK ZN ZN A 206 O HOH A 371 1555 1555 2.65 LINK ZN ZN A 206 O HOH A 375 1555 1555 2.63 LINK ZN ZN A 206 O HOH A 378 1555 1555 2.45 LINK NE2 HIS B 19 ZN ZN B 302 1555 1555 2.21 LINK ND1 HIS B 38 ZN ZN B 303 1555 1555 2.21 LINK NE2 HIS B 39 ZN ZN B 304 1555 1555 2.52 LINK OE2 GLU B 52 ZN ZN B 306 1555 1555 2.29 LINK OD2 ASP B 131 ZN ZN B 302 1555 2656 2.10 LINK NE2 HIS B 136 ZN ZN B 306 1555 1555 2.10 LINK ZN ZN B 303 O HOH B 471 1555 1555 2.14 LINK ZN ZN B 303 O HOH B 481 1555 1555 2.46 LINK ZN ZN B 304 O HOH B 485 1555 1555 2.42 LINK ZN ZN B 305 O HOH B 432 1555 1555 2.65 LINK ZN ZN B 306 O HOH B 407 1555 1555 2.03 LINK ZN ZN B 306 O HOH B 453 1555 1555 2.18 SITE 1 AC1 2 PHE A 154 TYR A 155 SITE 1 AC2 3 GLU A 85 ALA A 88 TRP A 89 SITE 1 AC3 3 HIS A 39 HOH A 348 HOH A 351 SITE 1 AC4 6 ARG A 44 GLU A 52 ASN A 132 HIS A 136 SITE 2 AC4 6 HOH A 303 HOH A 359 SITE 1 AC5 4 HIS A 15 HIS A 19 ASP A 131 HOH A 370 SITE 1 AC6 5 HIS A 38 HOH A 368 HOH A 371 HOH A 375 SITE 2 AC6 5 HOH A 378 SITE 1 AC7 4 HIS B 15 MET B 127 ILE B 130 ASP B 131 SITE 1 AC8 3 HIS B 15 HIS B 19 ASP B 131 SITE 1 AC9 4 HIS B 38 HOH B 471 HOH B 480 HOH B 481 SITE 1 AD1 4 HIS B 39 HOH B 435 HOH B 477 HOH B 485 SITE 1 AD2 2 CYS B 51 HOH B 432 SITE 1 AD3 6 ARG B 44 GLU B 52 ASN B 132 HIS B 136 SITE 2 AD3 6 HOH B 407 HOH B 453 CRYST1 50.843 109.012 55.894 90.00 89.99 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019668 0.000000 -0.000005 0.00000 SCALE2 0.000000 0.009173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017891 0.00000