HEADER TRANSPORT PROTEIN 20-DEC-18 6IZS TITLE CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE BAMA POTRA4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 80 KDA D15 ANTIGEN,D-15-AG,OUTER MEMBRANE PROTEIN D15, COMPND 5 PROTECTIVE SURFACE ANTIGEN D15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: BAMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL ASSEMBLY MACHINERY, POLY-POTRAS, OMP RECRUITMENT, LIPO- KEYWDS 2 PARTNERS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.MA,Q.WANG,Y.LI,P.TAN,H.WU,P.WANG,X.DONG,L.HONG,G.MENG REVDAT 4 22-NOV-23 6IZS 1 REMARK REVDAT 3 18-DEC-19 6IZS 1 JRNL REVDAT 2 27-NOV-19 6IZS 1 JRNL REVDAT 1 30-OCT-19 6IZS 0 JRNL AUTH X.MA,Q.WANG,Y.LI,P.TAN,H.WU,P.WANG,X.DONG,L.HONG,G.MENG JRNL TITL HOW BAMA RECRUITS OMP SUBSTRATESVIAPOLY-POTRAS DOMAIN. JRNL REF FASEB J. V. 33 14690 2019 JRNL REFN ESSN 1530-6860 JRNL PMID 31702961 JRNL DOI 10.1096/FJ.201900681RR REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 915 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 662 ; 0.032 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 640 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 893 ; 2.909 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1473 ; 1.374 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 86 ; 6.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ;29.629 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 116 ;17.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 105 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 747 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 132 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 347 ; 3.709 ; 3.710 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 346 ; 3.713 ; 3.695 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 432 ; 5.144 ; 5.513 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 433 ; 5.138 ; 5.532 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 315 ; 5.551 ; 4.348 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 316 ; 5.543 ; 4.363 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 462 ; 8.251 ; 6.243 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 758 ;10.552 ;47.092 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 742 ;10.463 ;46.468 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8037 31.9762 19.0368 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.0899 REMARK 3 T33: 0.0247 T12: -0.0055 REMARK 3 T13: 0.0035 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.5020 L22: 1.2656 REMARK 3 L33: 2.3124 L12: -0.8575 REMARK 3 L13: 0.4562 L23: -1.1494 REMARK 3 S TENSOR REMARK 3 S11: -0.1831 S12: -0.0133 S13: 0.0147 REMARK 3 S21: -0.0984 S22: 0.0785 S23: 0.0270 REMARK 3 S31: 0.2665 S32: 0.0691 S33: 0.1046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6IZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 35.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.77000 REMARK 200 R SYM FOR SHELL (I) : 1.77000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QDF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.09400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.04700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.57050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.52350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.61750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.09400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 35.04700 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 17.52350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.57050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.61750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 SER A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 VAL A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 GLY A 117 REMARK 465 VAL A 118 REMARK 465 GLY A 119 REMARK 465 TYR A 120 REMARK 465 GLN A 121 REMARK 465 TRP A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 271 O HOH A 284 1.17 REMARK 500 O HOH A 261 O HOH A 289 1.41 REMARK 500 O HOH A 247 O HOH A 289 1.48 REMARK 500 O HOH A 261 O HOH A 281 1.69 REMARK 500 O HOH A 260 O HOH A 281 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 39 CB SER A 39 OG -0.092 REMARK 500 ARG A 57 CG ARG A 57 CD 0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 21 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 57 CB - CG - CD ANGL. DEV. = 19.2 DEGREES REMARK 500 ARG A 57 CG - CD - NE ANGL. DEV. = 14.0 DEGREES REMARK 500 GLU A 64 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ILE A 96 CG1 - CB - CG2 ANGL. DEV. = -16.1 DEGREES REMARK 500 LEU A 98 CB - CG - CD2 ANGL. DEV. = -15.0 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 22 108.17 -57.42 REMARK 500 LEU A 106 -70.79 62.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 298 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 299 DISTANCE = 7.36 ANGSTROMS DBREF 6IZS A 22 106 UNP P46024 BAMA1_HAEIF 260 344 SEQADV 6IZS MET A 1 UNP P46024 INITIATING METHIONINE SEQADV 6IZS GLY A 2 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 3 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 4 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 5 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 6 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 7 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 8 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 9 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 10 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 11 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 12 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 13 UNP P46024 EXPRESSION TAG SEQADV 6IZS LEU A 14 UNP P46024 EXPRESSION TAG SEQADV 6IZS VAL A 15 UNP P46024 EXPRESSION TAG SEQADV 6IZS PRO A 16 UNP P46024 EXPRESSION TAG SEQADV 6IZS ARG A 17 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 18 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 19 UNP P46024 EXPRESSION TAG SEQADV 6IZS HIS A 20 UNP P46024 EXPRESSION TAG SEQADV 6IZS MET A 21 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 107 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 108 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 109 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 110 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 111 UNP P46024 EXPRESSION TAG SEQADV 6IZS SER A 112 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 113 UNP P46024 EXPRESSION TAG SEQADV 6IZS VAL A 114 UNP P46024 EXPRESSION TAG SEQADV 6IZS ALA A 115 UNP P46024 EXPRESSION TAG SEQADV 6IZS ALA A 116 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 117 UNP P46024 EXPRESSION TAG SEQADV 6IZS VAL A 118 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLY A 119 UNP P46024 EXPRESSION TAG SEQADV 6IZS TYR A 120 UNP P46024 EXPRESSION TAG SEQADV 6IZS GLN A 121 UNP P46024 EXPRESSION TAG SEQADV 6IZS TRP A 122 UNP P46024 EXPRESSION TAG SEQRES 1 A 122 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 122 LEU VAL PRO ARG GLY SER HIS MET LEU GLN TYR ASP LEU SEQRES 3 A 122 ARG SER ALA ARG ILE ILE GLY ASN LEU GLY GLY MET SER SEQRES 4 A 122 ALA GLU LEU GLU PRO LEU LEU SER ALA LEU HIS LEU ASN SEQRES 5 A 122 ASP THR PHE ARG ARG SER ASP ILE ALA ASP VAL GLU ASN SEQRES 6 A 122 ALA ILE LYS ALA LYS LEU GLY GLU ARG GLY TYR GLY SER SEQRES 7 A 122 ALA THR VAL ASN SER VAL PRO ASP PHE ASP ASP ALA ASN SEQRES 8 A 122 LYS THR LEU ALA ILE THR LEU VAL VAL ASP ALA GLY ARG SEQRES 9 A 122 ARG LEU GLY SER GLY SER GLY SER GLY VAL ALA ALA GLY SEQRES 10 A 122 VAL GLY TYR GLN TRP FORMUL 2 HOH *97(H2 O) HELIX 1 AA1 MET A 38 GLU A 43 1 6 HELIX 2 AA2 PRO A 44 LEU A 49 5 6 HELIX 3 AA3 ARG A 56 GLU A 73 1 18 SHEET 1 AA1 3 ASP A 25 ASN A 34 0 SHEET 2 AA1 3 THR A 93 ASP A 101 1 O LEU A 98 N ARG A 30 SHEET 3 AA1 3 THR A 80 ASP A 88 -1 N VAL A 84 O THR A 97 CRYST1 80.530 80.530 105.141 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012418 0.007169 0.000000 0.00000 SCALE2 0.000000 0.014339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009511 0.00000