HEADER SIGNALING PROTEIN 20-DEC-18 6IZW TITLE MYXOCOCCUS XANTHUS MGLA BOUND TO GTP-GAMMA-S AND MGLB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTUAL GLIDING-MOTILITY PROTEIN MGLA; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.5.2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLIDING MOTILITY PROTEIN MGLB; COMPND 8 CHAIN: B, C; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS (STRAIN DK 1622); SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: MGLA, MXAN_1925; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS17; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS (STRAIN DK 1622); SOURCE 13 ORGANISM_TAXID: 246197; SOURCE 14 STRAIN: DK 1622; SOURCE 15 GENE: MGLB, MXAN_1926; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PHIS17 KEYWDS SMALL RAS-LIKE GTPASE, CYTOSOLIC, MYXOCOCCUS MOTILITY PROTEIN, KEYWDS 2 SPATIAL OSCILLATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BARANWAL,P.GAYATHRI REVDAT 2 22-NOV-23 6IZW 1 REMARK REVDAT 1 16-OCT-19 6IZW 0 JRNL AUTH J.BARANWAL,S.LHOSPICE,M.KANADE,S.CHAKRABORTY,P.R.GADE, JRNL AUTH 2 S.HARNE,J.HERROU,T.MIGNOT,P.GAYATHRI JRNL TITL ALLOSTERIC REGULATION OF A PROKARYOTIC SMALL RAS-LIKE GTPASE JRNL TITL 2 CONTRIBUTES TO CELL POLARITY OSCILLATIONS IN BACTERIAL JRNL TITL 3 MOTILITY. JRNL REF PLOS BIOL. V. 17 00459 2019 JRNL REFN ESSN 1545-7885 JRNL PMID 31560685 JRNL DOI 10.1371/JOURNAL.PBIO.3000459 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2485 - 4.9902 1.00 2688 127 0.2049 0.2290 REMARK 3 2 4.9902 - 3.9617 1.00 2509 164 0.1745 0.2298 REMARK 3 3 3.9617 - 3.4611 1.00 2522 142 0.1853 0.2326 REMARK 3 4 3.4611 - 3.1448 1.00 2520 104 0.2007 0.2433 REMARK 3 5 3.1448 - 2.9194 1.00 2484 142 0.2105 0.2516 REMARK 3 6 2.9194 - 2.7473 1.00 2461 160 0.2174 0.2553 REMARK 3 7 2.7473 - 2.6097 1.00 2484 128 0.2232 0.2814 REMARK 3 8 2.6097 - 2.4961 1.00 2475 134 0.2141 0.2769 REMARK 3 9 2.4961 - 2.4001 1.00 2473 108 0.2708 0.3308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3541 REMARK 3 ANGLE : 1.016 4815 REMARK 3 CHIRALITY : 0.057 583 REMARK 3 PLANARITY : 0.005 610 REMARK 3 DIHEDRAL : 6.083 2104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979150 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23862 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.241 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T12 REMARK 200 REMARK 200 REMARK: HEXAGONAL, ROD-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 4000, 200MM AMMONIUM SULPHATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.77333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.54667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.54667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.77333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 MSE B 1 REMARK 465 LEU B 132 REMARK 465 VAL B 133 REMARK 465 LYS B 134 REMARK 465 LYS B 135 REMARK 465 THR B 136 REMARK 465 ASP B 137 REMARK 465 SER B 138 REMARK 465 PRO B 139 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 GLY B 142 REMARK 465 SER B 158 REMARK 465 GLU B 159 REMARK 465 GLY B 160 REMARK 465 SER B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 MSE C 1 REMARK 465 GLY C 2 REMARK 465 THR C 3 REMARK 465 GLN C 4 REMARK 465 LEU C 5 REMARK 465 SER C 131 REMARK 465 LEU C 132 REMARK 465 VAL C 133 REMARK 465 LYS C 134 REMARK 465 LYS C 135 REMARK 465 THR C 136 REMARK 465 ASP C 137 REMARK 465 SER C 138 REMARK 465 PRO C 139 REMARK 465 GLY C 140 REMARK 465 ALA C 141 REMARK 465 GLY C 142 REMARK 465 SER C 143 REMARK 465 PRO C 144 REMARK 465 PHE C 145 REMARK 465 ALA C 146 REMARK 465 GLU C 147 REMARK 465 MSE C 148 REMARK 465 SER C 149 REMARK 465 ASP C 150 REMARK 465 ASP C 151 REMARK 465 ASP C 152 REMARK 465 ILE C 153 REMARK 465 ASP C 154 REMARK 465 ASN C 155 REMARK 465 LEU C 156 REMARK 465 PHE C 157 REMARK 465 SER C 158 REMARK 465 GLU C 159 REMARK 465 GLY C 160 REMARK 465 SER C 161 REMARK 465 HIS C 162 REMARK 465 HIS C 163 REMARK 465 HIS C 164 REMARK 465 HIS C 165 REMARK 465 HIS C 166 REMARK 465 HIS C 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLN B 46 CG CD OE1 NE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 SER B 131 OG REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 MSE C 7 CG SE CE REMARK 470 TYR C 8 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 9 CG CD OE1 OE2 REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 GLU C 11 CG CD OE1 OE2 REMARK 470 LYS C 14 CG CD CE NZ REMARK 470 ARG C 21 NE CZ NH1 NH2 REMARK 470 GLN C 48 CG CD OE1 NE2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 LYS C 119 CG CD CE NZ REMARK 470 GLU C 124 CG CD OE1 OE2 REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -64.53 -132.22 REMARK 500 ASN A 162 54.41 39.58 REMARK 500 GLU B 9 -9.75 -59.67 REMARK 500 ALA B 44 128.61 -171.25 REMARK 500 LYS B 87 -75.82 -85.76 REMARK 500 ARG B 98 13.33 -140.45 REMARK 500 ASN C 49 43.65 -108.37 REMARK 500 ALA C 86 -83.08 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 508 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH C 225 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH C 226 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH C 227 DISTANCE = 7.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 THR A 54 OG1 87.7 REMARK 620 3 GSP A 301 O3G 174.5 89.4 REMARK 620 4 GSP A 301 O1B 85.5 169.4 96.7 REMARK 620 5 HOH A 409 O 82.7 78.8 92.2 92.3 REMARK 620 6 HOH A 429 O 90.6 94.9 94.4 93.2 170.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YMX RELATED DB: PDB REMARK 900 ONLY MGLA BOUND TO GDP DBREF 6IZW A 1 195 UNP Q1DB04 MGLA_MYXXD 1 195 DBREF 6IZW B 1 159 UNP Q1DB03 Q1DB03_MYXXD 1 159 DBREF 6IZW C 1 159 UNP Q1DB03 Q1DB03_MYXXD 1 159 SEQADV 6IZW GLY A 196 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW SER A 197 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW HIS A 198 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW HIS A 199 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW HIS A 200 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW HIS A 201 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW HIS A 202 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW HIS A 203 UNP Q1DB04 EXPRESSION TAG SEQADV 6IZW MSE B 148 UNP Q1DB03 ILE 148 ENGINEERED MUTATION SEQADV 6IZW GLY B 160 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW SER B 161 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS B 162 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS B 163 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS B 164 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS B 165 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS B 166 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS B 167 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW MSE C 148 UNP Q1DB03 ILE 148 ENGINEERED MUTATION SEQADV 6IZW GLY C 160 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW SER C 161 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS C 162 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS C 163 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS C 164 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS C 165 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS C 166 UNP Q1DB03 EXPRESSION TAG SEQADV 6IZW HIS C 167 UNP Q1DB03 EXPRESSION TAG SEQRES 1 A 203 MET SER PHE ILE ASN TYR SER SER ARG GLU ILE ASN CYS SEQRES 2 A 203 LYS ILE VAL TYR TYR GLY PRO GLY LEU CYS GLY LYS THR SEQRES 3 A 203 THR ASN LEU GLN TYR ILE TYR ASN LYS THR ALA ALA GLU SEQRES 4 A 203 THR LYS GLY LYS LEU ILE SER LEU SER THR GLU THR ASP SEQRES 5 A 203 ARG THR LEU PHE PHE ASP PHE LEU PRO LEU SER LEU GLY SEQRES 6 A 203 GLU ILE ARG GLY PHE LYS THR ARG PHE HIS LEU TYR THR SEQRES 7 A 203 VAL PRO GLY GLN VAL PHE TYR ASP ALA SER ARG LYS LEU SEQRES 8 A 203 ILE LEU LYS GLY VAL ASP GLY VAL VAL PHE VAL ALA ASP SEQRES 9 A 203 SER GLN ILE GLU ARG MET GLU ALA ASN MET GLU SER LEU SEQRES 10 A 203 GLU ASN LEU ARG ILE ASN LEU ALA GLU GLN GLY TYR ASP SEQRES 11 A 203 LEU ASN LYS ILE PRO TYR VAL ILE GLN TYR ASN LYS ARG SEQRES 12 A 203 ASP LEU PRO ASN ALA VAL THR VAL GLU GLU MET ARG LYS SEQRES 13 A 203 ALA LEU ASN HIS ARG ASN ILE PRO GLU TYR GLN ALA VAL SEQRES 14 A 203 ALA PRO THR GLY VAL GLY VAL PHE ASP THR LEU LYS ALA SEQRES 15 A 203 VAL ALA LYS LEU VAL LEU THR GLU LEU LYS LYS GLY GLY SEQRES 16 A 203 GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 167 MSE GLY THR GLN LEU VAL MSE TYR GLU GLU GLU PHE THR SEQRES 2 B 167 LYS ILE ASN ALA VAL CYS ASP ARG LEU THR LYS ASP ALA SEQRES 3 B 167 ASN ALA LYS VAL VAL PHE LEU VAL ASP LYS ASN GLY GLN SEQRES 4 B 167 LEU ILE SER SER ALA GLY GLN THR GLN ASN ILE ASP THR SEQRES 5 B 167 THR SER LEU ALA SER LEU THR ALA GLY ASN VAL ALA ALA SEQRES 6 B 167 MSE GLY GLY LEU ALA LYS LEU ILE GLY GLU ASN GLU PHE SEQRES 7 B 167 PRO ASN GLN PHE HIS GLU GLY ALA LYS ASP SER LEU TYR SEQRES 8 B 167 MSE THR ILE VAL GLY SER ARG VAL VAL LEU VAL VAL ILE SEQRES 9 B 167 PHE ASP ASN ARG THR SER LEU GLY LEU VAL ARG LEU ARG SEQRES 10 B 167 ILE LYS LYS ALA SER ASP GLU LEU THR LYS ILE PHE GLU SEQRES 11 B 167 SER LEU VAL LYS LYS THR ASP SER PRO GLY ALA GLY SER SEQRES 12 B 167 PRO PHE ALA GLU MSE SER ASP ASP ASP ILE ASP ASN LEU SEQRES 13 B 167 PHE SER GLU GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 167 MSE GLY THR GLN LEU VAL MSE TYR GLU GLU GLU PHE THR SEQRES 2 C 167 LYS ILE ASN ALA VAL CYS ASP ARG LEU THR LYS ASP ALA SEQRES 3 C 167 ASN ALA LYS VAL VAL PHE LEU VAL ASP LYS ASN GLY GLN SEQRES 4 C 167 LEU ILE SER SER ALA GLY GLN THR GLN ASN ILE ASP THR SEQRES 5 C 167 THR SER LEU ALA SER LEU THR ALA GLY ASN VAL ALA ALA SEQRES 6 C 167 MSE GLY GLY LEU ALA LYS LEU ILE GLY GLU ASN GLU PHE SEQRES 7 C 167 PRO ASN GLN PHE HIS GLU GLY ALA LYS ASP SER LEU TYR SEQRES 8 C 167 MSE THR ILE VAL GLY SER ARG VAL VAL LEU VAL VAL ILE SEQRES 9 C 167 PHE ASP ASN ARG THR SER LEU GLY LEU VAL ARG LEU ARG SEQRES 10 C 167 ILE LYS LYS ALA SER ASP GLU LEU THR LYS ILE PHE GLU SEQRES 11 C 167 SER LEU VAL LYS LYS THR ASP SER PRO GLY ALA GLY SER SEQRES 12 C 167 PRO PHE ALA GLU MSE SER ASP ASP ASP ILE ASP ASN LEU SEQRES 13 C 167 PHE SER GLU GLY SER HIS HIS HIS HIS HIS HIS MODRES 6IZW MSE B 7 MET MODIFIED RESIDUE MODRES 6IZW MSE B 66 MET MODIFIED RESIDUE MODRES 6IZW MSE B 92 MET MODIFIED RESIDUE MODRES 6IZW MSE C 7 MET MODIFIED RESIDUE MODRES 6IZW MSE C 66 MET MODIFIED RESIDUE MODRES 6IZW MSE C 92 MET MODIFIED RESIDUE HET MSE B 7 8 HET MSE B 66 8 HET MSE B 92 8 HET MSE B 148 8 HET MSE C 7 5 HET MSE C 66 8 HET MSE C 92 8 HET GSP A 301 32 HET MG A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 B 201 5 HETNAM MSE SELENOMETHIONINE HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 2 MSE 7(C5 H11 N O2 SE) FORMUL 4 GSP C10 H16 N5 O13 P3 S FORMUL 5 MG MG 2+ FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 HOH *161(H2 O) HELIX 1 AA1 GLY A 24 THR A 36 1 13 HELIX 2 AA2 ALA A 37 LYS A 41 5 5 HELIX 3 AA3 GLN A 82 PHE A 84 5 3 HELIX 4 AA4 TYR A 85 LEU A 93 1 9 HELIX 5 AA5 GLN A 106 GLU A 108 5 3 HELIX 6 AA6 ARG A 109 GLN A 127 1 19 HELIX 7 AA7 ASP A 130 ILE A 134 5 5 HELIX 8 AA8 THR A 150 ASN A 159 1 10 HELIX 9 AA9 VAL A 169 GLY A 173 5 5 HELIX 10 AB1 GLY A 175 LYS A 193 1 19 HELIX 11 AB2 TYR B 8 ALA B 26 1 19 HELIX 12 AB3 ASP B 51 ILE B 73 1 23 HELIX 13 AB4 SER B 110 SER B 131 1 22 HELIX 14 AB5 SER B 149 ASN B 155 1 7 HELIX 15 AB6 MSE C 7 ALA C 26 1 20 HELIX 16 AB7 ASP C 51 ILE C 73 1 23 HELIX 17 AB8 SER C 110 GLU C 130 1 21 SHEET 1 AA1 7 ILE A 45 SER A 48 0 SHEET 2 AA1 7 THR A 54 ILE A 67 -1 O LEU A 55 N LEU A 47 SHEET 3 AA1 7 PHE A 70 THR A 78 -1 O PHE A 74 N LEU A 62 SHEET 4 AA1 7 GLU A 10 TYR A 18 1 N ILE A 11 O ARG A 73 SHEET 5 AA1 7 GLY A 98 ASP A 104 1 O VAL A 102 N TYR A 18 SHEET 6 AA1 7 TYR A 136 ASN A 141 1 O GLN A 139 N ALA A 103 SHEET 7 AA1 7 GLU A 165 GLN A 167 1 O TYR A 166 N TYR A 140 SHEET 1 AA2 6 ILE A 45 SER A 48 0 SHEET 2 AA2 6 THR A 54 ILE A 67 -1 O LEU A 55 N LEU A 47 SHEET 3 AA2 6 PHE A 70 THR A 78 -1 O PHE A 74 N LEU A 62 SHEET 4 AA2 6 GLU A 10 TYR A 18 1 N ILE A 11 O ARG A 73 SHEET 5 AA2 6 PHE A 3 ASN A 5 -1 N ASN A 5 O GLU A 10 SHEET 6 AA2 6 LEU B 5 MSE B 7 1 O MSE B 7 N ILE A 4 SHEET 1 AA3 5 LEU B 40 GLY B 45 0 SHEET 2 AA3 5 ALA B 28 ASP B 35 -1 N LEU B 33 O SER B 42 SHEET 3 AA3 5 VAL B 99 ASP B 106 -1 O VAL B 102 N PHE B 32 SHEET 4 AA3 5 ASP B 88 ILE B 94 -1 N TYR B 91 O VAL B 103 SHEET 5 AA3 5 ASN B 80 HIS B 83 -1 N HIS B 83 O LEU B 90 SHEET 1 AA4 5 LEU C 40 GLY C 45 0 SHEET 2 AA4 5 VAL C 30 ASP C 35 -1 N LEU C 33 O ILE C 41 SHEET 3 AA4 5 VAL C 99 ASP C 106 -1 O VAL C 102 N PHE C 32 SHEET 4 AA4 5 ASP C 88 VAL C 95 -1 N THR C 93 O LEU C 101 SHEET 5 AA4 5 ASN C 80 GLU C 84 -1 N HIS C 83 O LEU C 90 LINK C VAL B 6 N MSE B 7 1555 1555 1.33 LINK C MSE B 7 N TYR B 8 1555 1555 1.33 LINK C ALA B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N GLY B 67 1555 1555 1.34 LINK C TYR B 91 N MSE B 92 1555 1555 1.34 LINK C MSE B 92 N THR B 93 1555 1555 1.33 LINK NH1 ARG B 98 O2 SO4 B 201 1555 1555 1.30 LINK C GLU B 147 N MSE B 148 1555 1555 1.32 LINK C MSE B 148 N SER B 149 1555 1555 1.33 LINK C VAL C 6 N MSE C 7 1555 1555 1.33 LINK C MSE C 7 N TYR C 8 1555 1555 1.34 LINK C ALA C 65 N MSE C 66 1555 1555 1.33 LINK C MSE C 66 N GLY C 67 1555 1555 1.33 LINK C TYR C 91 N MSE C 92 1555 1555 1.33 LINK C MSE C 92 N THR C 93 1555 1555 1.32 LINK OG1 THR A 26 MG MG A 302 1555 1555 2.18 LINK OG1 THR A 54 MG MG A 302 1555 1555 1.99 LINK O3G GSP A 301 MG MG A 302 1555 1555 2.13 LINK O1B GSP A 301 MG MG A 302 1555 1555 2.16 LINK MG MG A 302 O HOH A 409 1555 1555 2.08 LINK MG MG A 302 O HOH A 429 1555 1555 2.10 SITE 1 AC1 27 GLY A 21 LEU A 22 CYS A 23 GLY A 24 SITE 2 AC1 27 LYS A 25 THR A 26 THR A 27 ARG A 53 SITE 3 AC1 27 THR A 54 GLY A 81 ASN A 141 LYS A 142 SITE 4 AC1 27 ASP A 144 LEU A 145 VAL A 169 ALA A 170 SITE 5 AC1 27 PRO A 171 THR A 172 MG A 302 HOH A 401 SITE 6 AC1 27 HOH A 409 HOH A 410 HOH A 413 HOH A 429 SITE 7 AC1 27 HOH A 446 HOH A 453 HOH A 454 SITE 1 AC2 5 THR A 26 THR A 54 GSP A 301 HOH A 409 SITE 2 AC2 5 HOH A 429 SITE 1 AC3 6 GLY A 21 GLN A 82 VAL A 83 ARG A 109 SITE 2 AC3 6 HOH A 408 HOH A 437 SITE 1 AC4 3 THR A 51 ARG A 53 HOH A 425 SITE 1 AC5 5 LYS A 94 HOH A 439 THR B 3 ASN B 37 SITE 2 AC5 5 ARG B 98 CRYST1 88.482 88.482 131.320 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011302 0.006525 0.000000 0.00000 SCALE2 0.000000 0.013050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007615 0.00000