HEADER VIRAL PROTEIN 20-DEC-18 6IZZ TITLE THE RNA-DEPENDENT RNA POLYMERASE DOMAIN OF DENGUE 3 NS5, BOUND WITH TITLE 2 RK-0404678 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1452720 KEYWDS DENGUE, NS5, RNA-DEPENDENT RNA POLYMERASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.SHIMIZU,S.SEKINE REVDAT 3 22-NOV-23 6IZZ 1 REMARK REVDAT 2 13-JAN-21 6IZZ 1 JRNL REVDAT 1 25-DEC-19 6IZZ 0 JRNL AUTH H.SHIMIZU,A.SAITO,J.MIKUNI,E.E.NAKAYAMA,H.KOYAMA,T.HONMA, JRNL AUTH 2 M.SHIROUZU,S.I.SEKINE,T.SHIODA JRNL TITL DISCOVERY OF A SMALL MOLECULE INHIBITOR TARGETING DENGUE JRNL TITL 2 VIRUS NS5 RNA-DEPENDENT RNA POLYMERASE. JRNL REF PLOS NEGL TROP DIS V. 13 07894 2019 JRNL REFN ESSN 1935-2735 JRNL PMID 31738758 JRNL DOI 10.1371/JOURNAL.PNTD.0007894 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 60752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.1756 - 5.5184 1.00 2844 139 0.2020 0.2399 REMARK 3 2 5.5184 - 4.3806 1.00 2707 144 0.1818 0.2092 REMARK 3 3 4.3806 - 3.8270 1.00 2670 141 0.1734 0.2289 REMARK 3 4 3.8270 - 3.4772 1.00 2678 126 0.1848 0.2058 REMARK 3 5 3.4772 - 3.2280 1.00 2644 146 0.2084 0.2376 REMARK 3 6 3.2280 - 3.0377 1.00 2626 160 0.1998 0.2176 REMARK 3 7 3.0377 - 2.8856 1.00 2662 124 0.2089 0.2516 REMARK 3 8 2.8856 - 2.7600 1.00 2623 134 0.2064 0.2717 REMARK 3 9 2.7600 - 2.6537 1.00 2652 124 0.2177 0.2595 REMARK 3 10 2.6537 - 2.5621 1.00 2649 135 0.2086 0.2216 REMARK 3 11 2.5621 - 2.4820 1.00 2614 150 0.2152 0.2279 REMARK 3 12 2.4820 - 2.4111 1.00 2601 149 0.2205 0.2767 REMARK 3 13 2.4111 - 2.3476 1.00 2614 151 0.2329 0.2254 REMARK 3 14 2.3476 - 2.2903 1.00 2610 137 0.2797 0.3400 REMARK 3 15 2.2903 - 2.2383 0.97 2555 116 0.4692 0.5262 REMARK 3 16 2.2383 - 2.1906 0.98 2582 145 0.3071 0.3288 REMARK 3 17 2.1906 - 2.1468 1.00 2627 131 0.2859 0.3144 REMARK 3 18 2.1468 - 2.1063 1.00 2573 164 0.2862 0.2944 REMARK 3 19 2.1063 - 2.0687 0.95 2480 124 0.4493 0.4753 REMARK 3 20 2.0687 - 2.0336 0.95 2481 138 0.4888 0.4800 REMARK 3 21 2.0336 - 2.0008 1.00 2601 139 0.3329 0.3890 REMARK 3 22 2.0008 - 1.9700 0.99 2604 138 0.3749 0.3793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4742 REMARK 3 ANGLE : 0.725 6416 REMARK 3 CHIRALITY : 0.048 675 REMARK 3 PLANARITY : 0.005 823 REMARK 3 DIHEDRAL : 6.631 2831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60863 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 64.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 2.26400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2J7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% POLYETHYLENE GLYCOL 10000 AND 100 REMARK 280 MM TRIS-HCL (PH 8.0), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.13500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.13500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 82.02000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.64500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 82.02000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.64500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.13500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 82.02000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.64500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.13500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 82.02000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.64500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 250 REMARK 465 ILE A 251 REMARK 465 GLU A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 VAL A 255 REMARK 465 ASP A 256 REMARK 465 LEU A 257 REMARK 465 GLY A 258 REMARK 465 ALA A 259 REMARK 465 GLY A 260 REMARK 465 THR A 261 REMARK 465 ARG A 262 REMARK 465 HIS A 263 REMARK 465 VAL A 264 REMARK 465 ASN A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 PRO A 268 REMARK 465 GLU A 269 REMARK 465 THR A 270 REMARK 465 PRO A 271 REMARK 465 ALA A 406 REMARK 465 ALA A 407 REMARK 465 MET A 408 REMARK 465 GLY A 409 REMARK 465 ALA A 410 REMARK 465 VAL A 411 REMARK 465 PHE A 412 REMARK 465 THR A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 GLN A 417 REMARK 465 TRP A 418 REMARK 465 MET A 454 REMARK 465 GLY A 455 REMARK 465 LYS A 456 REMARK 465 ARG A 457 REMARK 465 GLU A 458 REMARK 465 LYS A 459 REMARK 465 LYS A 460 REMARK 465 LEU A 461 REMARK 465 GLY A 462 REMARK 465 GLU A 463 REMARK 465 PHE A 464 REMARK 465 GLY A 465 REMARK 465 LYS A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 GLY A 469 REMARK 465 SER A 470 REMARK 465 ARG A 471 REMARK 465 ALA A 472 REMARK 465 ILE A 473 REMARK 465 TRP A 474 REMARK 465 TYR A 475 REMARK 465 THR A 790 REMARK 465 SER A 791 REMARK 465 ARG A 792 REMARK 465 THR A 793 REMARK 465 THR A 794 REMARK 465 TRP A 795 REMARK 465 SER A 796 REMARK 465 ILE A 797 REMARK 465 HIS A 798 REMARK 465 ALA A 799 REMARK 465 HIS A 800 REMARK 465 MET A 886 REMARK 465 LYS A 887 REMARK 465 ARG A 888 REMARK 465 PHE A 889 REMARK 465 ARG A 890 REMARK 465 LYS A 891 REMARK 465 GLU A 892 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 SER A 895 REMARK 465 GLU A 896 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1255 O HOH A 1285 1.82 REMARK 500 O HOH A 1202 O HOH A 1230 1.87 REMARK 500 OG SER A 593 O HOH A 1001 1.90 REMARK 500 O HOH A 1051 O HOH A 1264 1.91 REMARK 500 N THR A 831 O HOH A 1002 1.93 REMARK 500 O HOH A 1012 O HOH A 1120 1.96 REMARK 500 O ASP A 332 O HOH A 1003 2.02 REMARK 500 O HOH A 1224 O HOH A 1268 2.03 REMARK 500 O HOH A 1125 O HOH A 1236 2.05 REMARK 500 O HOH A 1228 O HOH A 1248 2.08 REMARK 500 OD1 ASP A 533 O HOH A 1004 2.12 REMARK 500 O HOH A 1169 O HOH A 1321 2.12 REMARK 500 O HOH A 1004 O HOH A 1120 2.13 REMARK 500 N ASN A 272 O HOH A 1005 2.13 REMARK 500 O HOH A 1225 O HOH A 1239 2.13 REMARK 500 O HOH A 1248 O HOH A 1310 2.14 REMARK 500 OE2 GLU A 484 OH TYR A 572 2.17 REMARK 500 OE1 GLU A 439 O HOH A 1007 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1160 O HOH A 1270 3555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 287 53.79 -115.61 REMARK 500 ALA A 341 108.99 -44.24 REMARK 500 MET A 342 154.76 -42.22 REMARK 500 THR A 343 -179.37 -64.14 REMARK 500 ASP A 359 55.92 -97.42 REMARK 500 GLU A 429 54.75 -65.81 REMARK 500 SER A 448 24.58 -149.50 REMARK 500 TYR A 503 -44.60 69.51 REMARK 500 ASP A 596 -162.52 -127.19 REMARK 500 GLN A 597 168.63 66.64 REMARK 500 MET A 883 63.58 63.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 311 ALA A 312 -144.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1331 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 437 OE2 REMARK 620 2 HIS A 441 NE2 103.6 REMARK 620 3 CYS A 446 SG 100.9 123.9 REMARK 620 4 CYS A 449 SG 106.7 108.2 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 712 NE2 REMARK 620 2 HIS A 714 NE2 98.2 REMARK 620 3 CYS A 728 SG 108.5 113.3 REMARK 620 4 CYS A 847 SG 100.3 110.9 122.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B5C A 903 DBREF 6IZZ A 250 896 UNP Q5I3C1 Q5I3C1_9FLAV 2740 3386 SEQRES 1 A 647 THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY THR ARG SEQRES 2 A 647 HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET ASP VAL SEQRES 3 A 647 ILE GLY GLU ARG ILE ARG ARG ILE LYS GLU GLU HIS SER SEQRES 4 A 647 SER THR TRP HIS TYR ASP ASP GLU ASN PRO TYR LYS THR SEQRES 5 A 647 TRP ALA TYR HIS GLY SER TYR GLU VAL LYS ALA THR GLY SEQRES 6 A 647 SER ALA SER SER MET ILE ASN GLY VAL VAL LYS LEU LEU SEQRES 7 A 647 THR LYS PRO TRP ASP VAL VAL PRO THR VAL THR GLN MET SEQRES 8 A 647 ALA MET THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL SEQRES 9 A 647 PHE LYS GLU LYS VAL ASP THR ARG THR PRO LYS PRO MET SEQRES 10 A 647 PRO GLY THR ARG LYS VAL MET GLU ILE THR ALA GLY TRP SEQRES 11 A 647 LEU TRP ARG THR LEU GLY ARG ASN LYS ARG PRO ARG LEU SEQRES 12 A 647 CYS THR ARG GLU GLU PHE THR LYS LYS VAL ARG THR ASN SEQRES 13 A 647 ALA ALA MET GLY ALA VAL PHE THR GLU GLU ASN GLN TRP SEQRES 14 A 647 ASP SER ALA ARG ALA ALA VAL GLU ASP GLU GLU PHE TRP SEQRES 15 A 647 LYS LEU VAL ASP ARG GLU ARG GLU LEU HIS LYS GLN GLY SEQRES 16 A 647 LYS CYS GLY SER CYS VAL TYR ASN MET MET GLY LYS ARG SEQRES 17 A 647 GLU LYS LYS LEU GLY GLU PHE GLY LYS ALA LYS GLY SER SEQRES 18 A 647 ARG ALA ILE TRP TYR MET TRP LEU GLY ALA ARG TYR LEU SEQRES 19 A 647 GLU PHE GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP SEQRES 20 A 647 PHE SER ARG GLU ASN SER TYR SER GLY VAL GLU GLY GLU SEQRES 21 A 647 GLY LEU HIS LYS LEU GLY TYR ILE LEU ARG ASP ILE SER SEQRES 22 A 647 LYS ILE PRO GLY GLY ALA MET TYR ALA ASP ASP THR ALA SEQRES 23 A 647 GLY TRP ASP THR ARG ILE THR GLU ASP ASP LEU HIS ASN SEQRES 24 A 647 GLU GLU LYS ILE THR GLN GLN MET ASP PRO GLU HIS ARG SEQRES 25 A 647 GLN LEU ALA ASN ALA ILE PHE LYS LEU THR TYR GLN ASN SEQRES 26 A 647 LYS VAL VAL LYS VAL GLN ARG PRO THR PRO LYS GLY THR SEQRES 27 A 647 VAL MET ASP ILE ILE SER ARG LYS ASP GLN ARG GLY SER SEQRES 28 A 647 GLY GLN VAL GLY THR TYR GLY LEU ASN THR PHE THR ASN SEQRES 29 A 647 MET GLU ALA GLN LEU ILE ARG GLN MET GLU GLY GLU GLY SEQRES 30 A 647 VAL LEU SER LYS THR ASP LEU GLU ASN PRO HIS LEU LEU SEQRES 31 A 647 GLU LYS LYS ILE THR GLN TRP LEU GLU THR LYS GLY VAL SEQRES 32 A 647 GLU ARG LEU LYS ARG MET ALA ILE SER GLY ASP ASP CYS SEQRES 33 A 647 VAL VAL LYS PRO ILE ASP ASP ARG PHE ALA ASN ALA LEU SEQRES 34 A 647 LEU ALA LEU ASN ASP MET GLY LYS VAL ARG LYS ASP ILE SEQRES 35 A 647 PRO GLN TRP GLN PRO SER LYS GLY TRP HIS ASP TRP GLN SEQRES 36 A 647 GLN VAL PRO PHE CYS SER HIS HIS PHE HIS GLU LEU ILE SEQRES 37 A 647 MET LYS ASP GLY ARG LYS LEU VAL VAL PRO CYS ARG PRO SEQRES 38 A 647 GLN ASP GLU LEU ILE GLY ARG ALA ARG ILE SER GLN GLY SEQRES 39 A 647 ALA GLY TRP SER LEU LYS GLU THR ALA CYS LEU GLY LYS SEQRES 40 A 647 ALA TYR ALA GLN MET TRP ALA LEU MET TYR PHE HIS ARG SEQRES 41 A 647 ARG ASP LEU ARG LEU ALA SER ASN ALA ILE CYS SER ALA SEQRES 42 A 647 VAL PRO VAL HIS TRP VAL PRO THR SER ARG THR THR TRP SEQRES 43 A 647 SER ILE HIS ALA HIS HIS GLN TRP MET THR THR GLU ASP SEQRES 44 A 647 MET LEU THR VAL TRP ASN ARG VAL TRP ILE GLU ASP ASN SEQRES 45 A 647 PRO TRP MET GLU ASP LYS THR PRO VAL THR THR TRP GLU SEQRES 46 A 647 ASP VAL PRO TYR LEU GLY LYS ARG GLU ASP GLN TRP CYS SEQRES 47 A 647 GLY SER LEU ILE GLY LEU THR SER ARG ALA THR TRP ALA SEQRES 48 A 647 GLN ASN ILE LEU THR ALA ILE GLN GLN VAL ARG SER LEU SEQRES 49 A 647 ILE GLY ASN GLU GLU PHE LEU ASP TYR MET PRO SER MET SEQRES 50 A 647 LYS ARG PHE ARG LYS GLU GLU GLU SER GLU HET ZN A 901 1 HET ZN A 902 1 HET B5C A 903 14 HETNAM ZN ZINC ION HETNAM B5C 2-OXO-2H-1,3-BENZOXATHIOL-5-YL ACETATE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 B5C C9 H6 O4 S FORMUL 5 HOH *329(H2 O) HELIX 1 AA1 ASN A 272 HIS A 287 1 16 HELIX 2 AA2 ASN A 321 LEU A 327 1 7 HELIX 3 AA3 THR A 328 VAL A 333 5 6 HELIX 4 AA4 VAL A 334 MET A 340 1 7 HELIX 5 AA5 THR A 346 LYS A 357 1 12 HELIX 6 AA6 MET A 366 GLY A 385 1 20 HELIX 7 AA7 THR A 394 THR A 404 1 11 HELIX 8 AA8 PHE A 430 GLN A 443 1 14 HELIX 9 AA9 TRP A 477 GLY A 489 1 13 HELIX 10 AB1 GLY A 489 ASP A 494 1 6 HELIX 11 AB2 SER A 498 TYR A 503 1 6 HELIX 12 AB3 GLY A 510 LYS A 523 1 14 HELIX 13 AB4 GLY A 536 ILE A 541 5 6 HELIX 14 AB5 THR A 542 LYS A 551 1 10 HELIX 15 AB6 ILE A 552 MET A 556 5 5 HELIX 16 AB7 ASP A 557 TYR A 572 1 16 HELIX 17 AB8 GLY A 604 GLU A 625 1 22 HELIX 18 AB9 SER A 629 ASN A 635 1 7 HELIX 19 AC1 GLU A 640 LYS A 656 1 17 HELIX 20 AC2 ASP A 671 ALA A 677 5 7 HELIX 21 AC3 LEU A 678 MET A 684 1 7 HELIX 22 AC4 ASP A 702 VAL A 706 5 5 HELIX 23 AC5 PRO A 730 ARG A 739 1 10 HELIX 24 AC6 SER A 747 TYR A 766 1 20 HELIX 25 AC7 ARG A 769 VAL A 783 1 15 HELIX 26 AC8 ASP A 808 ILE A 818 1 11 HELIX 27 AC9 THR A 832 VAL A 836 5 5 HELIX 28 AD1 GLY A 840 CYS A 847 1 8 HELIX 29 AD2 LEU A 853 ASN A 862 1 10 HELIX 30 AD3 ASN A 862 GLY A 875 1 14 SHEET 1 AA1 4 ALA A 303 TYR A 308 0 SHEET 2 AA1 4 GLY A 586 ARG A 594 -1 O SER A 593 N ALA A 303 SHEET 3 AA1 4 LYS A 575 THR A 583 -1 N THR A 583 O GLY A 586 SHEET 4 AA1 4 TYR A 451 ASN A 452 1 N TYR A 451 O LYS A 578 SHEET 1 AA2 2 MET A 658 SER A 661 0 SHEET 2 AA2 2 ASP A 664 VAL A 667 -1 O ASP A 664 N SER A 661 SHEET 1 AA3 2 HIS A 712 ILE A 717 0 SHEET 2 AA3 2 LYS A 723 CYS A 728 -1 O LEU A 724 N LEU A 716 LINK OE2 GLU A 437 ZN ZN A 901 1555 1555 2.11 LINK NE2 HIS A 441 ZN ZN A 901 1555 1555 2.08 LINK SG CYS A 446 ZN ZN A 901 1555 1555 2.29 LINK SG CYS A 449 ZN ZN A 901 1555 1555 2.22 LINK NE2 HIS A 712 ZN ZN A 902 1555 1555 2.17 LINK NE2 HIS A 714 ZN ZN A 902 1555 1555 2.02 LINK SG CYS A 728 ZN ZN A 902 1555 1555 2.25 LINK SG CYS A 847 ZN ZN A 902 1555 1555 2.32 SITE 1 AC1 4 GLU A 437 HIS A 441 CYS A 446 CYS A 449 SITE 1 AC2 4 HIS A 712 HIS A 714 CYS A 728 CYS A 847 SITE 1 AC3 7 LYS A 756 GLN A 760 CYS A 780 ASP A 808 SITE 2 AC3 7 MET A 809 TRP A 833 TYR A 882 CRYST1 164.040 179.290 58.270 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017161 0.00000