HEADER DNA/ANTIBIOTIC 24-DEC-18 6J0I TITLE STRUCTURE OF [CO2+-(CHROMOMYCIN A3)2]-D(TTGGCGAA)2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*TP*GP*GP*CP*GP*AP*A)-3'); COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS MISMATCH DNA, CHROMOMYCIN A3, DRUG-DNA COMPLEX, G:G MISMATCH, DNA- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.B.SATANGE,C.Y.CHUANG,M.H.HOU REVDAT 5 22-NOV-23 6J0I 1 HETSYN LINK REVDAT 4 29-JUL-20 6J0I 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 30-OCT-19 6J0I 1 JRNL REVDAT 2 21-AUG-19 6J0I 1 JRNL REVDAT 1 24-JUL-19 6J0I 0 JRNL AUTH R.SATANGE,C.Y.CHUANG,S.NEIDLE,M.H.HOU JRNL TITL POLYMORPHIC G:G MISMATCHES ACT AS HOTSPOTS FOR INDUCING JRNL TITL 2 RIGHT-HANDED Z DNA BY DNA INTERCALATION. JRNL REF NUCLEIC ACIDS RES. V. 47 8899 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31361900 JRNL DOI 10.1093/NAR/GKZ653 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 12624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.1212 - 3.9475 0.82 2934 150 0.2250 0.2206 REMARK 3 2 3.9475 - 3.1408 1.00 3567 177 0.2374 0.2931 REMARK 3 3 3.1408 - 2.7460 0.96 3422 187 0.3140 0.3566 REMARK 3 4 2.7460 - 2.4960 0.59 2080 107 0.3829 0.4849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300009603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12624 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 1VAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM SODIUM CACODYLATE (PH 7.3), 7MM REMARK 280 MGCL2, 12MM SPERMINE, 4% PEG 400, 4% 1-PROPANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.36250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.36250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, K, L, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, O, P, Q, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 258 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 261 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 220 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 242 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 226 O HOH E 243 1.83 REMARK 500 O3 ERI L 3 O HOH C 201 1.91 REMARK 500 O HOH E 204 O HOH E 242 1.95 REMARK 500 N2 DG A 4 O2 DC B 13 2.05 REMARK 500 OP2 DA A 7 O HOH A 201 2.06 REMARK 500 O5' DT A 1 O HOH A 202 2.10 REMARK 500 OP2 DG A 4 O HOH A 203 2.11 REMARK 500 O2' CRH A 103 O HOH A 204 2.11 REMARK 500 O1 ARI O 1 C5 CRH E 103 2.11 REMARK 500 O1 ARI G 1 C7 CRH A 103 2.12 REMARK 500 O5 1GL K 2 O HOH C 202 2.14 REMARK 500 O1 CDR Q 1 C1 CRH F 103 2.14 REMARK 500 O HOH D 203 O HOH D 214 2.16 REMARK 500 OC4 ERI I 3 O HOH A 205 2.16 REMARK 500 C4 CDR P 2 O1 ERI P 3 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 230 O HOH D 235 4545 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 3 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG E 3 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DA E 7 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG F 11 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DG F 11 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 263 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 264 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 265 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH B 240 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 241 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 242 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 243 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 244 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 245 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 246 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH C 270 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH C 271 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH C 272 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH C 273 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH C 274 DISTANCE = 9.09 ANGSTROMS REMARK 525 HOH D 248 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH D 249 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH D 250 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH D 251 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH E 272 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH E 273 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH E 274 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH E 275 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH E 276 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH E 277 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH E 278 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH F 260 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH F 261 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH F 262 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH F 263 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH F 264 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH F 265 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH F 266 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH F 267 DISTANCE = 7.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 111 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 N7 REMARK 620 2 HOH A 210 O 94.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 110 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CRH A 103 O1 REMARK 620 2 CRH A 103 O9 66.0 REMARK 620 3 CRH B 103 O1 61.5 90.0 REMARK 620 4 CRH B 103 O9 85.5 149.1 64.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO C 111 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 3 N7 REMARK 620 2 HOH C 205 O 114.9 REMARK 620 3 HOH C 216 O 77.2 90.4 REMARK 620 4 HOH D 210 O 117.9 117.8 72.1 REMARK 620 5 HOH D 228 O 144.9 74.3 137.9 80.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO C 110 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CRH C 103 O1 REMARK 620 2 CRH C 103 O9 67.3 REMARK 620 3 CRH D 103 O1 74.1 93.7 REMARK 620 4 CRH D 103 O9 111.8 155.2 63.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO E 110 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CRH E 103 O1 REMARK 620 2 CRH E 103 O9 70.6 REMARK 620 3 CRH F 103 O1 80.4 107.8 REMARK 620 4 CRH F 103 O9 104.9 171.3 63.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO F 104 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG F 12 N7 REMARK 620 2 HOH F 214 O 97.3 REMARK 620 3 HOH F 227 O 143.6 117.2 REMARK 620 4 HOH F 247 O 151.0 60.7 57.0 REMARK 620 N 1 2 3 DBREF 6J0I A 1 8 PDB 6J0I 6J0I 1 8 DBREF 6J0I B 9 16 PDB 6J0I 6J0I 9 16 DBREF 6J0I C 1 8 PDB 6J0I 6J0I 1 8 DBREF 6J0I D 9 16 PDB 6J0I 6J0I 9 16 DBREF 6J0I E 1 8 PDB 6J0I 6J0I 1 8 DBREF 6J0I F 9 16 PDB 6J0I 6J0I 9 16 SEQRES 1 A 8 DT DT DG DG DC DG DA DA SEQRES 1 B 8 DT DT DG DG DC DG DA DA SEQRES 1 C 8 DT DT DG DG DC DG DA DA SEQRES 1 D 8 DT DT DG DG DC DG DA DA SEQRES 1 E 8 DT DT DG DG DC DG DA DA SEQRES 1 F 8 DT DT DG DG DC DG DA DA HET ARI G 1 12 HET 1GL G 2 11 HET CDR H 1 9 HET CDR H 2 9 HET ERI H 3 14 HET CDR I 1 9 HET CDR I 2 9 HET ERI I 3 14 HET ARI J 1 12 HET 1GL J 2 11 HET ARI K 1 12 HET 1GL K 2 11 HET CDR L 1 9 HET CDR L 2 9 HET ERI L 3 14 HET CDR M 1 9 HET CDR M 2 9 HET ERI M 3 14 HET ARI N 1 12 HET 1GL N 2 11 HET ARI O 1 12 HET 1GL O 2 11 HET CDR P 1 9 HET CDR P 2 9 HET ERI P 3 14 HET CDR Q 1 9 HET CDR Q 2 9 HET ERI Q 3 14 HET ARI R 1 12 HET 1GL R 2 11 HET CRH A 103 28 HET CO A 110 1 HET CO A 111 1 HET CRH B 103 28 HET CRH C 103 28 HET CO C 110 1 HET CO C 111 1 HET CRH D 103 28 HET CO D 104 1 HET CRH E 103 28 HET CO E 110 1 HET CRH F 103 28 HET CO F 104 1 HETNAM ARI (2R,3R,6R)-6-HYDROXY-2-METHYLTETRAHYDRO-2H-PYRAN-3-YL HETNAM 2 ARI ACETATE HETNAM 1GL 2,6-DIDEOXY-4-O-METHYL-ALPHA-D-GALACTOPYRANOSE HETNAM CDR (2R,5S,6R)-6-METHYLTETRAHYDRO-2H-PYRAN-2,5-DIOL HETNAM ERI 3-C-METHYL-4-O-ACETYL-ALPHA-L-OLIVOPYRANOSE HETNAM CRH 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4- HETNAM 2 CRH DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE HETNAM CO COBALT (II) ION HETSYN ARI [O4]-ACETOXY-2,3-DIDEOXYFUCOSE HETSYN 1GL 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2- HETSYN 2 1GL DEOXY-4-O-METHYL-ALPHA-D-FUCOPYRANOSE; 2,6-DIDEOXY-4- HETSYN 3 1GL O-METHYL-ALPHA-D-GALACTOSE; 2,6-DIDEOXY-4-O-METHYL-D- HETSYN 4 1GL GALACTOSE; 2,6-DIDEOXY-4-O-METHYL-GALACTOSE HETSYN CDR 2,3-DIDEOXYFUCOSE HETSYN ERI 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO- HETSYN 2 ERI HEXOPYRANOSE; 3-C-METHYL-4-O-ACETYL-ALPHA-L-OLIVOSE; HETSYN 3 ERI 3-C-METHYL-4-O-ACETYL-L-OLIVOSE; 3-C-METHYL-4-O- HETSYN 4 ERI ACETYL-OLIVOSE FORMUL 7 ARI 6(C8 H14 O4) FORMUL 7 1GL 6(C7 H14 O4) FORMUL 8 CDR 12(C6 H12 O3) FORMUL 8 ERI 6(C9 H16 O5) FORMUL 19 CRH 6(C21 H24 O7) FORMUL 20 CO 7(CO 2+) FORMUL 32 HOH *381(H2 O) LINK C6 CRH A 103 O1 ARI G 1 1555 1555 1.23 LINK C2 CRH A 103 O1 CDR H 1 1555 1555 1.48 LINK C2 CRH B 103 O1 CDR I 1 1555 1555 1.42 LINK C6 CRH B 103 O1 ARI J 1 1555 1555 1.34 LINK C6 CRH C 103 O1 ARI K 1 1555 1555 1.34 LINK C2 CRH C 103 O1 CDR L 1 1555 1555 1.44 LINK C2 CRH D 103 O1 CDR M 1 1555 1555 1.47 LINK C6 CRH D 103 O1 ARI N 1 1555 1555 1.35 LINK C6 CRH E 103 O1 ARI O 1 1555 1555 1.37 LINK C2 CRH E 103 O1 CDR P 1 1555 1555 1.38 LINK C2 CRH F 103 O1 CDR Q 1 1555 1555 1.45 LINK C6 CRH F 103 O1 ARI R 1 1555 1555 1.49 LINK C3 ARI G 1 O1 1GL G 2 1555 1555 1.51 LINK C3 CDR H 1 O1 CDR H 2 1555 1555 1.38 LINK C3 CDR H 2 O1 ERI H 3 1555 1555 1.45 LINK C3 CDR I 1 O1 CDR I 2 1555 1555 1.37 LINK C3 CDR I 2 O1 ERI I 3 1555 1555 1.34 LINK C3 ARI J 1 O1 1GL J 2 1555 1555 1.46 LINK C3 ARI K 1 O1 1GL K 2 1555 1555 1.50 LINK C3 CDR L 1 O1 CDR L 2 1555 1555 1.38 LINK C3 CDR L 2 O1 ERI L 3 1555 1555 1.39 LINK C3 CDR M 1 O1 CDR M 2 1555 1555 1.37 LINK C3 CDR M 2 O1 ERI M 3 1555 1555 1.53 LINK C3 ARI N 1 O1 1GL N 2 1555 1555 1.47 LINK C3 ARI O 1 O1 1GL O 2 1555 1555 1.53 LINK C3 CDR P 1 O1 CDR P 2 1555 1555 1.37 LINK C3 CDR P 2 O1 ERI P 3 1555 1555 1.27 LINK C3 CDR Q 1 O1 CDR Q 2 1555 1555 1.37 LINK C3 CDR Q 2 O1 ERI Q 3 1555 1555 1.38 LINK C3 ARI R 1 O1 1GL R 2 1555 1555 1.49 LINK N7 DG A 4 CO CO A 111 1555 1555 2.39 LINK O1 CRH A 103 CO CO A 110 1555 1555 2.21 LINK O9 CRH A 103 CO CO A 110 1555 1555 2.06 LINK CO CO A 110 O1 CRH B 103 1555 1555 2.53 LINK CO CO A 110 O9 CRH B 103 1555 1555 1.90 LINK CO CO A 111 O HOH A 210 1555 1555 2.53 LINK N7 DG C 3 CO CO C 111 1555 1555 2.80 LINK O1 CRH C 103 CO CO C 110 1555 1555 2.09 LINK O9 CRH C 103 CO CO C 110 1555 1555 2.29 LINK CO CO C 110 O1 CRH D 103 1555 1555 2.31 LINK CO CO C 110 O9 CRH D 103 1555 1555 1.94 LINK CO CO C 111 O HOH C 205 1555 1555 2.19 LINK CO CO C 111 O HOH C 216 1555 1555 2.19 LINK CO CO C 111 O HOH D 210 1555 4545 2.26 LINK CO CO C 111 O HOH D 228 1555 4545 2.25 LINK N7 DG D 12 CO CO D 104 1555 1555 2.29 LINK O1 CRH E 103 CO CO E 110 1555 1555 2.04 LINK O9 CRH E 103 CO CO E 110 1555 1555 2.05 LINK CO CO E 110 O1 CRH F 103 1555 1555 2.35 LINK CO CO E 110 O9 CRH F 103 1555 1555 2.10 LINK N7 DG F 12 CO CO F 104 1555 1555 2.48 LINK CO CO F 104 O HOH F 214 1555 1555 2.41 LINK CO CO F 104 O HOH F 227 1555 1555 2.77 LINK CO CO F 104 O HOH F 247 1555 1555 2.54 CRYST1 47.826 48.096 96.725 90.00 90.00 90.00 P 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010339 0.00000