HEADER IMMUNE SYSTEM 27-DEC-18 6J14 TITLE COMPLEX STRUCTURE OF GY-14 AND PD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GY-14 HEAVY CHAIN V FRAGMENT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GY-14 LIGHT CHAIN V FRAGMENT; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 1; COMPND 11 CHAIN: G; COMPND 12 SYNONYM: HPD-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 5 PPPARG4; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 11 PPPARG4; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: PDCD1, PD1; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 19 PPPARG4; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS TUMOR IMMUNOTHERAPY, COMPLEX STRUCTURE, FG LOOP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.CHEN,S.TAN,H.WHANG,H.ZHANG,Y.CHAI,J.QI,J.YAN,G.F.GAO REVDAT 2 22-NOV-23 6J14 1 REMARK REVDAT 1 06-NOV-19 6J14 0 JRNL AUTH D.CHEN,S.TAN,H.ZHANG,H.WANG,W.HE,R.SHI,Z.TONG,J.ZHU,H.CHENG, JRNL AUTH 2 S.GAO,Y.CHAI,J.QI,M.XIAO,J.YAN,G.F.GAO JRNL TITL THE FG LOOP OF PD-1 SERVES AS A "HOTSPOT" FOR THERAPEUTIC JRNL TITL 2 MONOCLONAL ANTIBODIES IN TUMOR IMMUNE CHECKPOINT THERAPY. JRNL REF ISCIENCE V. 14 113 2019 JRNL REFN ESSN 2589-0042 JRNL PMID 30952089 JRNL DOI 10.1016/J.ISCI.2019.03.017 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 66956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0539 - 4.0342 0.99 2802 127 0.1803 0.2166 REMARK 3 2 4.0342 - 3.2024 0.99 2762 134 0.1787 0.1733 REMARK 3 3 3.2024 - 2.7976 0.99 2717 126 0.1895 0.2207 REMARK 3 4 2.7976 - 2.5419 0.99 2718 126 0.1959 0.2305 REMARK 3 5 2.5419 - 2.3597 0.98 2713 155 0.1985 0.2156 REMARK 3 6 2.3597 - 2.2206 0.98 2684 143 0.1883 0.2416 REMARK 3 7 2.2206 - 2.1094 0.98 2685 135 0.1824 0.1958 REMARK 3 8 2.1094 - 2.0176 0.98 2672 139 0.1799 0.2160 REMARK 3 9 2.0176 - 1.9399 0.98 2654 150 0.1835 0.2170 REMARK 3 10 1.9399 - 1.8729 0.97 2659 129 0.1909 0.2413 REMARK 3 11 1.8729 - 1.8144 0.97 2640 142 0.1881 0.2262 REMARK 3 12 1.8144 - 1.7625 0.97 2672 142 0.1909 0.2178 REMARK 3 13 1.7625 - 1.7161 0.97 2611 138 0.1909 0.2219 REMARK 3 14 1.7161 - 1.6742 0.97 2641 126 0.1938 0.2365 REMARK 3 15 1.6742 - 1.6362 0.97 2650 154 0.1900 0.2223 REMARK 3 16 1.6362 - 1.6014 0.97 2612 138 0.1864 0.2105 REMARK 3 17 1.6014 - 1.5693 0.96 2611 165 0.1849 0.1975 REMARK 3 18 1.5693 - 1.5397 0.96 2573 155 0.1934 0.2327 REMARK 3 19 1.5397 - 1.5122 0.96 2652 121 0.1948 0.2482 REMARK 3 20 1.5122 - 1.4866 0.95 2614 147 0.1924 0.2367 REMARK 3 21 1.4866 - 1.4626 0.96 2544 167 0.1963 0.2102 REMARK 3 22 1.4626 - 1.4401 0.96 2592 138 0.1953 0.2221 REMARK 3 23 1.4401 - 1.4189 0.95 2615 120 0.2004 0.2000 REMARK 3 24 1.4189 - 1.3989 0.94 2513 133 0.2136 0.2337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2633 REMARK 3 ANGLE : 0.933 3577 REMARK 3 CHIRALITY : 0.085 391 REMARK 3 PLANARITY : 0.006 457 REMARK 3 DIHEDRAL : 18.450 963 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RRQ,3EYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M MGCL2, CACL2, 0.1 M IMIDAZOLE REMARK 280 -MES (PH 6.5), 18% V/V ETHYLENE GLYCOL AND POLYETHYLENE GLYCOL REMARK 280 8000, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.83950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 27 REMARK 465 THR A 28 REMARK 465 PHE A 29 REMARK 465 THR A 30 REMARK 465 SER A 120 REMARK 465 SER G 57 REMARK 465 ASN G 58 REMARK 465 THR G 59 REMARK 465 SER G 60 REMARK 465 GLU G 61 REMARK 465 SER G 62 REMARK 465 PHE G 63 REMARK 465 GLU G 84 REMARK 465 ASP G 85 REMARK 465 ARG G 86 REMARK 465 SER G 87 REMARK 465 GLN G 88 REMARK 465 PRO G 89 REMARK 465 GLY G 90 REMARK 465 GLN G 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 288 O HOH B 346 1.82 REMARK 500 O HOH A 302 O HOH A 341 1.89 REMARK 500 O HOH B 235 O HOH B 334 1.92 REMARK 500 O HOH A 207 O HOH A 333 1.95 REMARK 500 O HOH B 315 O HOH B 329 2.01 REMARK 500 O HOH B 205 O HOH B 301 2.02 REMARK 500 O HOH G 223 O HOH G 230 2.10 REMARK 500 O HOH A 247 O HOH A 315 2.11 REMARK 500 O HOH B 225 O HOH B 329 2.13 REMARK 500 O HOH A 302 O HOH A 314 2.14 REMARK 500 OD1 ASP A 108 O HOH A 201 2.17 REMARK 500 O HOH A 320 O HOH A 330 2.18 REMARK 500 O GLY A 66 O HOH A 202 2.18 REMARK 500 O HOH A 310 O HOH A 329 2.18 REMARK 500 O HOH B 370 O HOH B 376 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 270 O HOH B 289 2544 1.82 REMARK 500 O HOH A 356 O HOH B 364 2454 2.16 REMARK 500 O HOH A 337 O HOH G 255 1554 2.18 REMARK 500 O HOH A 213 O HOH B 280 2454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 22 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 106 -95.42 -96.48 REMARK 500 VAL B 56 -50.13 77.43 REMARK 500 ARG B 82 72.56 50.96 REMARK 500 ARG B 82 72.56 42.11 REMARK 500 SER G 73 8.46 82.61 REMARK 500 CYS G 93 -23.23 70.86 REMARK 500 ARG G 112 72.04 53.33 REMARK 500 LYS G 131 124.85 74.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 375 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 376 DISTANCE = 6.17 ANGSTROMS DBREF 6J14 A 1 120 PDB 6J14 6J14 1 120 DBREF 6J14 B 1 112 PDB 6J14 6J14 1 112 DBREF 6J14 G 33 147 UNP Q15116 PDCD1_HUMAN 33 147 SEQRES 1 A 120 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 A 120 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA LEU GLY SEQRES 3 A 120 ASP THR PHE THR ASP TYR GLU ILE HIS TRP VAL LYS GLN SEQRES 4 A 120 THR PRO VAL HIS GLY LEU GLU TRP ILE GLY VAL ILE HIS SEQRES 5 A 120 PRO GLY SER GLY GLY THR VAL TYR ASN GLN LYS PHE LYS SEQRES 6 A 120 GLY LYS ALA THR LEU THR ALA ASP LYS TYR SER SER THR SEQRES 7 A 120 ALA TYR MET GLU LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 A 120 ALA VAL TYR TYR CYS THR ARG GLU GLY MET ASN THR ASP SEQRES 9 A 120 TRP TYR PHE ASP VAL TRP GLY ALA GLY THR THR VAL THR SEQRES 10 A 120 VAL SER SER SEQRES 1 B 112 ASP ILE LEU MET THR GLN ASP GLU LEU SER LEU PRO VAL SEQRES 2 B 112 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 B 112 GLN THR ILE VAL HIS THR ASN GLY ASN THR TYR LEU GLU SEQRES 4 B 112 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 B 112 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 B 112 ARG PHE SER GLY SER GLY SER GLY THR TYR PHE THR LEU SEQRES 7 B 112 LYS ILE SER ARG LEU GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 B 112 TYR CYS PHE GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 B 112 GLY GLY THR LYS LEU GLU MET LYS SEQRES 1 G 115 ASN PRO PRO THR PHE SER PRO ALA LEU LEU VAL VAL THR SEQRES 2 G 115 GLU GLY ASP ASN ALA THR PHE THR CYS SER PHE SER ASN SEQRES 3 G 115 THR SER GLU SER PHE VAL LEU ASN TRP TYR ARG MET SER SEQRES 4 G 115 PRO SER ASN GLN THR ASP LYS LEU ALA ALA PHE PRO GLU SEQRES 5 G 115 ASP ARG SER GLN PRO GLY GLN ASP CYS ARG PHE ARG VAL SEQRES 6 G 115 THR GLN LEU PRO ASN GLY ARG ASP PHE HIS MET SER VAL SEQRES 7 G 115 VAL ARG ALA ARG ARG ASN ASP SER GLY THR TYR LEU CYS SEQRES 8 G 115 GLY ALA ILE SER LEU ALA PRO LYS ALA GLN ILE LYS GLU SEQRES 9 G 115 SER LEU ARG ALA GLU LEU ARG VAL THR GLU ARG FORMUL 4 HOH *392(H2 O) HELIX 1 AA1 GLN A 62 LYS A 65 5 4 HELIX 2 AA2 THR A 87 SER A 91 5 5 HELIX 3 AA3 GLU B 84 LEU B 88 5 5 HELIX 4 AA4 ARG G 114 SER G 118 5 5 SHEET 1 AA1 4 LEU A 4 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 ALA A 24 -1 O LYS A 23 N GLN A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N LEU A 20 SHEET 4 AA1 4 ALA A 68 ALA A 72 -1 N THR A 71 O TYR A 80 SHEET 1 AA2 6 GLU A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 114 VAL A 118 1 O THR A 115 N GLU A 10 SHEET 3 AA2 6 ALA A 92 GLY A 100 -1 N TYR A 94 O THR A 114 SHEET 4 AA2 6 TYR A 32 THR A 40 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLY A 44 ILE A 51 -1 O ILE A 51 N ILE A 34 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O VAL A 59 N VAL A 50 SHEET 1 AA3 4 GLU A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 114 VAL A 118 1 O THR A 115 N GLU A 10 SHEET 3 AA3 4 ALA A 92 GLY A 100 -1 N TYR A 94 O THR A 114 SHEET 4 AA3 4 VAL A 109 TRP A 110 -1 O VAL A 109 N ARG A 98 SHEET 1 AA4 4 MET B 4 GLN B 6 0 SHEET 2 AA4 4 ALA B 19 SER B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA4 4 TYR B 75 ILE B 80 -1 O LEU B 78 N ILE B 21 SHEET 4 AA4 4 PHE B 67 SER B 72 -1 N SER B 68 O LYS B 79 SHEET 1 AA5 6 SER B 10 VAL B 13 0 SHEET 2 AA5 6 THR B 107 MET B 111 1 O LYS B 108 N LEU B 11 SHEET 3 AA5 6 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA5 6 LEU B 38 GLN B 43 -1 N GLN B 43 O VAL B 90 SHEET 5 AA5 6 LYS B 50 TYR B 54 -1 O LEU B 52 N TRP B 40 SHEET 6 AA5 6 ASN B 58 ARG B 59 -1 O ASN B 58 N TYR B 54 SHEET 1 AA6 4 SER B 10 VAL B 13 0 SHEET 2 AA6 4 THR B 107 MET B 111 1 O LYS B 108 N LEU B 11 SHEET 3 AA6 4 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA6 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 AA7 4 THR G 36 SER G 38 0 SHEET 2 AA7 4 ALA G 50 SER G 55 -1 O THR G 53 N SER G 38 SHEET 3 AA7 4 ASP G 105 VAL G 110 -1 O VAL G 110 N ALA G 50 SHEET 4 AA7 4 PHE G 95 GLN G 99 -1 N ARG G 96 O SER G 109 SHEET 1 AA8 5 LEU G 41 THR G 45 0 SHEET 2 AA8 5 ALA G 140 THR G 145 1 O ARG G 143 N LEU G 42 SHEET 3 AA8 5 GLY G 119 SER G 127 -1 N TYR G 121 O ALA G 140 SHEET 4 AA8 5 LEU G 65 MET G 70 -1 N TYR G 68 O LEU G 122 SHEET 5 AA8 5 THR G 76 PHE G 82 -1 O PHE G 82 N LEU G 65 SHEET 1 AA9 4 LEU G 41 THR G 45 0 SHEET 2 AA9 4 ALA G 140 THR G 145 1 O ARG G 143 N LEU G 42 SHEET 3 AA9 4 GLY G 119 SER G 127 -1 N TYR G 121 O ALA G 140 SHEET 4 AA9 4 GLN G 133 GLU G 136 -1 O GLN G 133 N SER G 127 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.06 SSBOND 2 CYS B 23 CYS B 93 1555 1555 2.03 SSBOND 3 CYS G 54 CYS G 123 1555 1555 2.08 CISPEP 1 VAL B 99 PRO B 100 0 -0.48 CISPEP 2 SER G 38 PRO G 39 0 1.13 CISPEP 3 PHE G 82 PRO G 83 0 -1.72 CISPEP 4 ALA G 129 PRO G 130 0 -5.63 CRYST1 43.422 75.679 55.873 90.00 104.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023030 0.000000 0.005875 0.00000 SCALE2 0.000000 0.013214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018471 0.00000