HEADER OXIDOREDUCTASE 04-JAN-19 6J38 TITLE CRYSTAL STRUCTURE OF CMIS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-DEPENDENT GLYCINE OXYDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. MJ635-86F5; SOURCE 3 ORGANISM_TAXID: 1321967; SOURCE 4 GENE: CMIS2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FLAVOENZYME, POLYKETIDE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KAWASAKI,T.CHISUGA,A.MIYANAGA,F.KUDO,T.EGUCHI REVDAT 3 22-NOV-23 6J38 1 REMARK REVDAT 2 10-JUL-19 6J38 1 JRNL REVDAT 1 12-JUN-19 6J38 0 JRNL AUTH D.KAWASAKI,T.CHISUGA,A.MIYANAGA,F.KUDO,T.EGUCHI JRNL TITL STRUCTURAL ANALYSIS OF THE GLYCINE OXIDASE HOMOLOGUE CMIS2 JRNL TITL 2 REVEALS A UNIQUE SUBSTRATE RECOGNITION MECHANISM FOR JRNL TITL 3 FORMATION OF A BETA-AMINO ACID STARTER UNIT IN CREMIMYCIN JRNL TITL 4 BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 58 2706 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31154757 JRNL DOI 10.1021/ACS.BIOCHEM.9B00444 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.60000 REMARK 3 B22 (A**2) : -3.34000 REMARK 3 B33 (A**2) : -5.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5520 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5405 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7537 ; 1.318 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12363 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 719 ; 5.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;34.055 ;21.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 836 ;14.842 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;16.985 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 888 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6215 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1177 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 368 B 1 368 21846 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 89.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-NA, PEG3350, HEXAAMMINECOBALT(III) REMARK 280 CHLORIDE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -10.88544 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 89.29899 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 369 REMARK 465 ALA A 370 REMARK 465 THR A 371 REMARK 465 ALA A 372 REMARK 465 ALA A 373 REMARK 465 ALA A 374 REMARK 465 GLY A 375 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ASN B 49 REMARK 465 GLU B 50 REMARK 465 MET B 51 REMARK 465 LEU B 52 REMARK 465 TYR B 53 REMARK 465 SER B 54 REMARK 465 ASP B 180 REMARK 465 GLU B 181 REMARK 465 ARG B 182 REMARK 465 ARG B 247 REMARK 465 GLY B 248 REMARK 465 SER B 249 REMARK 465 ALA B 369 REMARK 465 ALA B 370 REMARK 465 THR B 371 REMARK 465 ALA B 372 REMARK 465 ALA B 373 REMARK 465 ALA B 374 REMARK 465 GLY B 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 12 CA GLY A 12 C 0.098 REMARK 500 LEU A 13 N LEU A 13 CA 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 84.42 -153.29 REMARK 500 LYS A 36 -126.07 -109.54 REMARK 500 GLN A 55 74.61 -152.38 REMARK 500 ARG A 88 72.84 -115.61 REMARK 500 ASP A 271 -127.77 50.00 REMARK 500 ALA A 329 84.58 -157.78 REMARK 500 SER A 333 -105.82 47.20 REMARK 500 ILE A 335 28.47 -143.45 REMARK 500 GLU B 32 86.10 -152.87 REMARK 500 LYS B 36 -124.96 -109.14 REMARK 500 ARG B 88 70.90 -116.90 REMARK 500 ASP B 271 -130.20 49.70 REMARK 500 ALA B 329 86.54 -156.59 REMARK 500 SER B 333 -106.33 46.26 REMARK 500 ILE B 335 27.61 -143.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 DBREF 6J38 A 1 375 UNP X5IYZ1 X5IYZ1_9ACTN 1 375 DBREF 6J38 B 1 375 UNP X5IYZ1 X5IYZ1_9ACTN 1 375 SEQADV 6J38 MET A -19 UNP X5IYZ1 INITIATING METHIONINE SEQADV 6J38 GLY A -18 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER A -17 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER A -16 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A -15 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A -14 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A -13 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A -12 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A -11 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A -10 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER A -9 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER A -8 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 GLY A -7 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 LEU A -6 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 VAL A -5 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 PRO A -4 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 ARG A -3 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 GLY A -2 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER A -1 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS A 0 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 MET B -19 UNP X5IYZ1 INITIATING METHIONINE SEQADV 6J38 GLY B -18 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER B -17 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER B -16 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B -15 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B -14 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B -13 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B -12 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B -11 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B -10 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER B -9 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER B -8 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 GLY B -7 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 LEU B -6 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 VAL B -5 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 PRO B -4 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 ARG B -3 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 GLY B -2 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 SER B -1 UNP X5IYZ1 EXPRESSION TAG SEQADV 6J38 HIS B 0 UNP X5IYZ1 EXPRESSION TAG SEQRES 1 A 395 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 395 LEU VAL PRO ARG GLY SER HIS MET HIS VAL VAL VAL VAL SEQRES 3 A 395 GLY GLY GLY VAL ILE GLY LEU SER VAL ALA TRP GLN ALA SEQRES 4 A 395 LEU GLU ARG GLY LEU ARG VAL THR VAL VAL ASP PRO GLU SEQRES 5 A 395 PRO ALA SER LYS ALA SER HIS VAL SER ALA GLY MET LEU SEQRES 6 A 395 PRO ALA ALA ASN GLU MET LEU TYR SER GLN GLU ASP LEU SEQRES 7 A 395 LEU ARG LEU CYS LEU ALA SER ARG GLU ARG TYR PRO SER SEQRES 8 A 395 PHE VAL LYS GLU LEU GLU ALA VAL SER GLY THR SER ALA SEQRES 9 A 395 GLY TYR ARG ARG ASP GLY VAL LEU ASP ALA ALA PHE ASP SEQRES 10 A 395 ASP GLU SER LEU ALA ALA LEU ASP GLY LEU ARG ASN PHE SEQRES 11 A 395 LEU ALA PRO LEU GLY VAL ALA VAL ALA PRO LEU ASN ALA SEQRES 12 A 395 ARG ARG CYS ARG GLU HIS GLU PRO MET LEU ALA GLU SER SEQRES 13 A 395 VAL ARG GLY GLY LEU LEU GLY PRO ASP ASP GLY ALA VAL SEQRES 14 A 395 ASN PRO ARG GLU LEU THR ALA ALA LEU LEU ALA ALA ILE SEQRES 15 A 395 ASP VAL ARG GLY GLY THR LEU ILE ARG ARG ARG ALA THR SEQRES 16 A 395 GLU PHE LEU ALA ASP GLU ARG THR PRO GLY VAL LEU LEU SEQRES 17 A 395 GLU ASN GLY CYS ALA VAL HIS GLY ASP ARG VAL VAL LEU SEQRES 18 A 395 SER ALA GLY CYS TRP THR HIS ARG LEU ALA GLY LEU PRO SEQRES 19 A 395 ALA GLY ALA VAL PRO GLU ILE ALA PRO ALA LYS GLY GLN SEQRES 20 A 395 ILE LEU ARG LEU ARG SER ALA ALA PRO PHE LEU ARG ARG SEQRES 21 A 395 ALA THR ARG ALA VAL THR ARG GLY SER GLY VAL TYR LEU SEQRES 22 A 395 VAL PRO ARG THR ASP GLY GLU LEU VAL VAL GLY ALA THR SEQRES 23 A 395 TYR GLU GLU ARG ASP TYR ASP THR THR VAL THR ALA GLY SEQRES 24 A 395 GLY VAL ALA GLU LEU LEU GLY LYS VAL LEU ALA VAL LEU SEQRES 25 A 395 PRO GLY ALA ALA GLU LEU GLU LEU ALA GLU THR ALA ALA SEQRES 26 A 395 GLY LEU ARG PRO GLY SER PRO ASP GLY LEU PRO VAL LEU SEQRES 27 A 395 GLY TRP THR ALA VAL PRO ASN LEU LEU VAL ALA THR GLY SEQRES 28 A 395 HIS SER ARG ILE GLY VAL GLN LEU ALA PRO ILE THR ALA SEQRES 29 A 395 ASP VAL MET GLY GLU MET LEU VAL THR GLY ARG THR PRO SEQRES 30 A 395 GLU VAL ALA LYS ALA PHE ALA VAL ASP ARG PHE ALA ALA SEQRES 31 A 395 THR ALA ALA ALA GLY SEQRES 1 B 395 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 395 LEU VAL PRO ARG GLY SER HIS MET HIS VAL VAL VAL VAL SEQRES 3 B 395 GLY GLY GLY VAL ILE GLY LEU SER VAL ALA TRP GLN ALA SEQRES 4 B 395 LEU GLU ARG GLY LEU ARG VAL THR VAL VAL ASP PRO GLU SEQRES 5 B 395 PRO ALA SER LYS ALA SER HIS VAL SER ALA GLY MET LEU SEQRES 6 B 395 PRO ALA ALA ASN GLU MET LEU TYR SER GLN GLU ASP LEU SEQRES 7 B 395 LEU ARG LEU CYS LEU ALA SER ARG GLU ARG TYR PRO SER SEQRES 8 B 395 PHE VAL LYS GLU LEU GLU ALA VAL SER GLY THR SER ALA SEQRES 9 B 395 GLY TYR ARG ARG ASP GLY VAL LEU ASP ALA ALA PHE ASP SEQRES 10 B 395 ASP GLU SER LEU ALA ALA LEU ASP GLY LEU ARG ASN PHE SEQRES 11 B 395 LEU ALA PRO LEU GLY VAL ALA VAL ALA PRO LEU ASN ALA SEQRES 12 B 395 ARG ARG CYS ARG GLU HIS GLU PRO MET LEU ALA GLU SER SEQRES 13 B 395 VAL ARG GLY GLY LEU LEU GLY PRO ASP ASP GLY ALA VAL SEQRES 14 B 395 ASN PRO ARG GLU LEU THR ALA ALA LEU LEU ALA ALA ILE SEQRES 15 B 395 ASP VAL ARG GLY GLY THR LEU ILE ARG ARG ARG ALA THR SEQRES 16 B 395 GLU PHE LEU ALA ASP GLU ARG THR PRO GLY VAL LEU LEU SEQRES 17 B 395 GLU ASN GLY CYS ALA VAL HIS GLY ASP ARG VAL VAL LEU SEQRES 18 B 395 SER ALA GLY CYS TRP THR HIS ARG LEU ALA GLY LEU PRO SEQRES 19 B 395 ALA GLY ALA VAL PRO GLU ILE ALA PRO ALA LYS GLY GLN SEQRES 20 B 395 ILE LEU ARG LEU ARG SER ALA ALA PRO PHE LEU ARG ARG SEQRES 21 B 395 ALA THR ARG ALA VAL THR ARG GLY SER GLY VAL TYR LEU SEQRES 22 B 395 VAL PRO ARG THR ASP GLY GLU LEU VAL VAL GLY ALA THR SEQRES 23 B 395 TYR GLU GLU ARG ASP TYR ASP THR THR VAL THR ALA GLY SEQRES 24 B 395 GLY VAL ALA GLU LEU LEU GLY LYS VAL LEU ALA VAL LEU SEQRES 25 B 395 PRO GLY ALA ALA GLU LEU GLU LEU ALA GLU THR ALA ALA SEQRES 26 B 395 GLY LEU ARG PRO GLY SER PRO ASP GLY LEU PRO VAL LEU SEQRES 27 B 395 GLY TRP THR ALA VAL PRO ASN LEU LEU VAL ALA THR GLY SEQRES 28 B 395 HIS SER ARG ILE GLY VAL GLN LEU ALA PRO ILE THR ALA SEQRES 29 B 395 ASP VAL MET GLY GLU MET LEU VAL THR GLY ARG THR PRO SEQRES 30 B 395 GLU VAL ALA LYS ALA PHE ALA VAL ASP ARG PHE ALA ALA SEQRES 31 B 395 THR ALA ALA ALA GLY HET FAD A 501 53 HET FAD B 501 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *124(H2 O) HELIX 1 AA1 GLY A 9 ARG A 22 1 14 HELIX 2 AA2 LYS A 36 SER A 41 1 6 HELIX 3 AA3 ASN A 49 TYR A 53 5 5 HELIX 4 AA4 GLN A 55 GLY A 81 1 27 HELIX 5 AA5 ASP A 97 ALA A 112 1 16 HELIX 6 AA6 ALA A 123 GLU A 130 1 8 HELIX 7 AA7 ASN A 150 ARG A 165 1 16 HELIX 8 AA8 ALA A 203 LEU A 210 5 8 HELIX 9 AA9 THR A 277 LEU A 292 1 16 HELIX 10 AB1 PRO A 293 LEU A 298 5 6 HELIX 11 AB2 ILE A 335 GLY A 354 1 20 HELIX 12 AB3 PRO A 357 PHE A 368 5 12 HELIX 13 AB4 GLY B 9 ARG B 22 1 14 HELIX 14 AB5 LYS B 36 SER B 41 1 6 HELIX 15 AB6 GLU B 56 GLY B 81 1 26 HELIX 16 AB7 ASP B 97 ALA B 112 1 16 HELIX 17 AB8 ALA B 123 GLU B 130 1 8 HELIX 18 AB9 ASN B 150 ARG B 165 1 16 HELIX 19 AC1 ALA B 203 LEU B 210 5 8 HELIX 20 AC2 THR B 277 LEU B 292 1 16 HELIX 21 AC3 PRO B 293 LEU B 298 5 6 HELIX 22 AC4 HIS B 332 ARG B 334 5 3 HELIX 23 AC5 ILE B 335 GLY B 354 1 20 HELIX 24 AC6 PRO B 357 PHE B 368 5 12 SHEET 1 AA1 6 THR A 168 ILE A 170 0 SHEET 2 AA1 6 ARG A 25 VAL A 29 1 N VAL A 28 O THR A 168 SHEET 3 AA1 6 HIS A 2 VAL A 6 1 N VAL A 5 O THR A 27 SHEET 4 AA1 6 ARG A 198 LEU A 201 1 O VAL A 200 N VAL A 6 SHEET 5 AA1 6 LEU A 326 THR A 330 1 O LEU A 327 N VAL A 199 SHEET 6 AA1 6 VAL A 317 TRP A 320 -1 N VAL A 317 O THR A 330 SHEET 1 AA2 3 MET A 44 LEU A 45 0 SHEET 2 AA2 3 GLY A 147 VAL A 149 -1 O GLY A 147 N LEU A 45 SHEET 3 AA2 3 TYR A 86 ARG A 87 -1 N ARG A 87 O ALA A 148 SHEET 1 AA3 8 ALA A 119 ASN A 122 0 SHEET 2 AA3 8 GLY A 139 GLY A 143 -1 O GLY A 140 N LEU A 121 SHEET 3 AA3 8 VAL A 91 ALA A 95 -1 N ASP A 93 O LEU A 141 SHEET 4 AA3 8 THR A 242 THR A 246 1 O ARG A 243 N LEU A 92 SHEET 5 AA3 8 SER A 249 PRO A 255 -1 O LEU A 253 N THR A 242 SHEET 6 AA3 8 GLU A 260 GLY A 264 -1 O GLY A 264 N TYR A 252 SHEET 7 AA3 8 PRO A 223 ARG A 232 -1 N LEU A 231 O LEU A 261 SHEET 8 AA3 8 GLU A 299 PRO A 309 -1 O GLU A 302 N ARG A 230 SHEET 1 AA4 3 ALA A 174 LEU A 178 0 SHEET 2 AA4 3 GLY A 185 LEU A 188 -1 O GLY A 185 N LEU A 178 SHEET 3 AA4 3 ALA A 193 HIS A 195 -1 O VAL A 194 N VAL A 186 SHEET 1 AA5 6 THR B 168 ILE B 170 0 SHEET 2 AA5 6 ARG B 25 VAL B 29 1 N VAL B 28 O THR B 168 SHEET 3 AA5 6 HIS B 2 VAL B 6 1 N VAL B 5 O THR B 27 SHEET 4 AA5 6 ARG B 198 LEU B 201 1 O VAL B 200 N VAL B 6 SHEET 5 AA5 6 LEU B 326 THR B 330 1 O LEU B 327 N VAL B 199 SHEET 6 AA5 6 VAL B 317 TRP B 320 -1 N VAL B 317 O THR B 330 SHEET 1 AA6 3 MET B 44 LEU B 45 0 SHEET 2 AA6 3 GLY B 147 VAL B 149 -1 O GLY B 147 N LEU B 45 SHEET 3 AA6 3 TYR B 86 ARG B 87 -1 N ARG B 87 O ALA B 148 SHEET 1 AA7 8 ALA B 119 ASN B 122 0 SHEET 2 AA7 8 GLY B 139 GLY B 143 -1 O GLY B 140 N LEU B 121 SHEET 3 AA7 8 VAL B 91 ALA B 95 -1 N ASP B 93 O LEU B 141 SHEET 4 AA7 8 THR B 242 VAL B 245 1 O ARG B 243 N ALA B 94 SHEET 5 AA7 8 VAL B 251 PRO B 255 -1 O LEU B 253 N THR B 242 SHEET 6 AA7 8 GLU B 260 GLY B 264 -1 O GLY B 264 N TYR B 252 SHEET 7 AA7 8 PRO B 223 ARG B 232 -1 N LEU B 231 O LEU B 261 SHEET 8 AA7 8 GLU B 299 PRO B 309 -1 O ARG B 308 N ALA B 224 SHEET 1 AA8 3 ALA B 174 LEU B 178 0 SHEET 2 AA8 3 GLY B 185 LEU B 188 -1 O GLY B 185 N LEU B 178 SHEET 3 AA8 3 ALA B 193 HIS B 195 -1 O VAL B 194 N VAL B 186 CISPEP 1 GLY A 264 ALA A 265 0 -3.24 CISPEP 2 GLY B 264 ALA B 265 0 -1.77 SITE 1 AC1 32 GLY A 7 GLY A 9 VAL A 10 ILE A 11 SITE 2 AC1 32 VAL A 29 ASP A 30 PRO A 31 GLU A 32 SITE 3 AC1 32 ALA A 34 LYS A 36 ALA A 37 SER A 38 SITE 4 AC1 32 SER A 41 ALA A 42 GLY A 43 MET A 44 SITE 5 AC1 32 ARG A 173 ALA A 174 ALA A 203 GLY A 204 SITE 6 AC1 32 TRP A 206 GLY A 226 GLY A 306 ARG A 308 SITE 7 AC1 32 PRO A 309 SER A 333 ARG A 334 ILE A 335 SITE 8 AC1 32 GLY A 336 VAL A 337 GLN A 338 HOH A 621 SITE 1 AC2 29 GLY B 7 GLY B 9 VAL B 10 ILE B 11 SITE 2 AC2 29 VAL B 29 ASP B 30 PRO B 31 LYS B 36 SITE 3 AC2 29 ALA B 37 SER B 38 SER B 41 ALA B 42 SITE 4 AC2 29 GLY B 43 MET B 44 ARG B 173 ALA B 174 SITE 5 AC2 29 ALA B 203 GLY B 204 TRP B 206 ARG B 308 SITE 6 AC2 29 PRO B 309 SER B 333 ARG B 334 ILE B 335 SITE 7 AC2 29 GLY B 336 VAL B 337 GLN B 338 HOH B 602 SITE 8 AC2 29 HOH B 605 CRYST1 59.370 83.620 89.960 90.00 96.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016844 0.000000 0.002053 0.00000 SCALE2 0.000000 0.011959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011198 0.00000