HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-JAN-19 6J3C TITLE CRYSTAL STRUCTURE OF HUMAN DHODH IN COMPLEX WITH INHIBITOR 1291 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 5 EC: 1.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHODH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DHODH, INHIBITOR, COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YU,Q.CHEN REVDAT 2 27-MAR-24 6J3C 1 REMARK REVDAT 1 21-AUG-19 6J3C 0 JRNL AUTH T.ZENG,Z.ZUO,Y.LUO,Y.ZHAO,Y.YU,Q.CHEN JRNL TITL A NOVEL SERIES OF HUMAN DIHYDROOROTATE DEHYDROGENASE JRNL TITL 2 INHIBITORS DISCOVERED BY IN VITRO SCREENING: INHIBITION JRNL TITL 3 ACTIVITY AND CRYSTALLOGRAPHIC BINDING MODE. JRNL REF FEBS OPEN BIO V. 9 1348 2019 JRNL REFN ESSN 2211-5463 JRNL PMID 31087527 JRNL DOI 10.1002/2211-5463.12658 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9443 - 4.8480 0.99 2799 161 0.2062 0.2328 REMARK 3 2 4.8480 - 3.8489 1.00 2708 142 0.1521 0.1644 REMARK 3 3 3.8489 - 3.3627 1.00 2671 156 0.1446 0.1852 REMARK 3 4 3.3627 - 3.0553 1.00 2669 150 0.1567 0.1764 REMARK 3 5 3.0553 - 2.8364 1.00 2646 136 0.1579 0.2038 REMARK 3 6 2.8364 - 2.6692 1.00 2645 142 0.1606 0.1590 REMARK 3 7 2.6692 - 2.5355 1.00 2669 133 0.1584 0.1751 REMARK 3 8 2.5355 - 2.4252 1.00 2623 134 0.1568 0.2007 REMARK 3 9 2.4252 - 2.3318 1.00 2648 147 0.1566 0.1845 REMARK 3 10 2.3318 - 2.2514 1.00 2614 153 0.1575 0.1783 REMARK 3 11 2.2514 - 2.1810 1.00 2620 144 0.1657 0.2035 REMARK 3 12 2.1810 - 2.1186 1.00 2607 122 0.1712 0.1829 REMARK 3 13 2.1186 - 2.0629 1.00 2615 146 0.1834 0.2186 REMARK 3 14 2.0629 - 2.0125 1.00 2618 134 0.1893 0.2149 REMARK 3 15 2.0125 - 1.9668 1.00 2662 106 0.1853 0.2247 REMARK 3 16 1.9668 - 1.9249 1.00 2617 146 0.2054 0.2349 REMARK 3 17 1.9249 - 1.8864 0.99 2561 132 0.2209 0.2479 REMARK 3 18 1.8864 - 1.8508 0.91 2429 112 0.2463 0.2604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2930 REMARK 3 ANGLE : 1.018 3971 REMARK 3 CHIRALITY : 0.041 437 REMARK 3 PLANARITY : 0.005 514 REMARK 3 DIHEDRAL : 14.919 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES PH4.6, 2M AMMONIUM SULPHATE, 30% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.86867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.93433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.93433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.86867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 70 REMARK 465 ALA A 71 REMARK 465 ARG A 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 188 O HOH A 501 1.37 REMARK 500 HZ3 LYS A 124 O HOH A 507 1.44 REMARK 500 HZ2 LYS A 110 O HOH A 513 1.57 REMARK 500 HE22 GLN A 141 O HOH A 512 1.58 REMARK 500 O HOH A 781 O HOH A 782 1.86 REMARK 500 O HOH A 659 O HOH A 713 1.86 REMARK 500 O HOH A 503 O HOH A 709 1.89 REMARK 500 O HOH A 730 O HOH A 757 1.97 REMARK 500 O HOH A 686 O HOH A 767 1.98 REMARK 500 OD1 ASP A 194 O HOH A 501 2.00 REMARK 500 O HOH A 719 O HOH A 746 2.03 REMARK 500 O ASN A 212 O HOH A 502 2.05 REMARK 500 O HOH A 723 O HOH A 748 2.07 REMARK 500 O VAL A 189 O HOH A 503 2.07 REMARK 500 CG ASP A 194 O HOH A 501 2.08 REMARK 500 O HOH A 726 O HOH A 742 2.08 REMARK 500 OG SER A 188 O HOH A 501 2.09 REMARK 500 O HOH A 712 O HOH A 727 2.11 REMARK 500 O HOH A 507 O HOH A 754 2.13 REMARK 500 O HOH A 605 O HOH A 637 2.13 REMARK 500 O HOH A 675 O HOH A 778 2.14 REMARK 500 OE1 GLU A 274 O HOH A 504 2.16 REMARK 500 O HOH A 664 O HOH A 717 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 731 O HOH A 774 4655 1.99 REMARK 500 O HOH A 723 O HOH A 775 2544 2.08 REMARK 500 O ARG A 131 NE2 GLN A 239 2544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 -58.18 -122.21 REMARK 500 ASP A 99 79.08 -104.37 REMARK 500 TYR A 356 -65.18 -147.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 781 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A 782 DISTANCE = 7.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B5X A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 408 DBREF 6J3C A 31 396 UNP Q02127 PYRD_HUMAN 30 395 SEQRES 1 A 366 ALA THR GLY ASP GLU ARG PHE TYR ALA GLU HIS LEU MET SEQRES 2 A 366 PRO THR LEU GLN GLY LEU LEU ASP PRO GLU SER ALA HIS SEQRES 3 A 366 ARG LEU ALA VAL ARG PHE THR SER LEU GLY LEU LEU PRO SEQRES 4 A 366 ARG ALA ARG PHE GLN ASP SER ASP MET LEU GLU VAL ARG SEQRES 5 A 366 VAL LEU GLY HIS LYS PHE ARG ASN PRO VAL GLY ILE ALA SEQRES 6 A 366 ALA GLY PHE ASP LYS HIS GLY GLU ALA VAL ASP GLY LEU SEQRES 7 A 366 TYR LYS MET GLY PHE GLY PHE VAL GLU ILE GLY SER VAL SEQRES 8 A 366 THR PRO LYS PRO GLN GLU GLY ASN PRO ARG PRO ARG VAL SEQRES 9 A 366 PHE ARG LEU PRO GLU ASP GLN ALA VAL ILE ASN ARG TYR SEQRES 10 A 366 GLY PHE ASN SER HIS GLY LEU SER VAL VAL GLU HIS ARG SEQRES 11 A 366 LEU ARG ALA ARG GLN GLN LYS GLN ALA LYS LEU THR GLU SEQRES 12 A 366 ASP GLY LEU PRO LEU GLY VAL ASN LEU GLY LYS ASN LYS SEQRES 13 A 366 THR SER VAL ASP ALA ALA GLU ASP TYR ALA GLU GLY VAL SEQRES 14 A 366 ARG VAL LEU GLY PRO LEU ALA ASP TYR LEU VAL VAL ASN SEQRES 15 A 366 VAL SER SER PRO ASN THR ALA GLY LEU ARG SER LEU GLN SEQRES 16 A 366 GLY LYS ALA GLU LEU ARG ARG LEU LEU THR LYS VAL LEU SEQRES 17 A 366 GLN GLU ARG ASP GLY LEU ARG ARG VAL HIS ARG PRO ALA SEQRES 18 A 366 VAL LEU VAL LYS ILE ALA PRO ASP LEU THR SER GLN ASP SEQRES 19 A 366 LYS GLU ASP ILE ALA SER VAL VAL LYS GLU LEU GLY ILE SEQRES 20 A 366 ASP GLY LEU ILE VAL THR ASN THR THR VAL SER ARG PRO SEQRES 21 A 366 ALA GLY LEU GLN GLY ALA LEU ARG SER GLU THR GLY GLY SEQRES 22 A 366 LEU SER GLY LYS PRO LEU ARG ASP LEU SER THR GLN THR SEQRES 23 A 366 ILE ARG GLU MET TYR ALA LEU THR GLN GLY ARG VAL PRO SEQRES 24 A 366 ILE ILE GLY VAL GLY GLY VAL SER SER GLY GLN ASP ALA SEQRES 25 A 366 LEU GLU LYS ILE ARG ALA GLY ALA SER LEU VAL GLN LEU SEQRES 26 A 366 TYR THR ALA LEU THR PHE TRP GLY PRO PRO VAL VAL GLY SEQRES 27 A 366 LYS VAL LYS ARG GLU LEU GLU ALA LEU LEU LYS GLU GLN SEQRES 28 A 366 GLY PHE GLY GLY VAL THR ASP ALA ILE GLY ALA ASP HIS SEQRES 29 A 366 ARG ARG HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET FMN A 405 50 HET ORO A 406 11 HET B5X A 407 54 HET LDA A 408 47 HETNAM SO4 SULFATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM B5X (6R)-1-[4-[3-(DIMETHYLAMINO)PHENYL]-3,5-BIS(FLUORANYL) HETNAM 2 B5X PHENYL]-6-PROPAN-2-YL-6,7-DIHYDRO-5H-BENZOTRIAZOL-4- HETNAM 3 B5X ONE HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 FMN C17 H21 N4 O9 P FORMUL 7 ORO C5 H4 N2 O4 FORMUL 8 B5X C23 H24 F2 N4 O FORMUL 9 LDA C14 H31 N O FORMUL 10 HOH *282(H2 O) HELIX 1 AA1 THR A 32 HIS A 41 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 ASP A 51 LEU A 65 1 15 HELIX 4 AA4 SER A 76 GLU A 80 5 5 HELIX 5 AA5 ALA A 104 GLY A 112 1 9 HELIX 6 AA6 PRO A 138 ASP A 140 5 3 HELIX 7 AA7 GLY A 153 ALA A 163 1 11 HELIX 8 AA8 ARG A 164 ASP A 174 1 11 HELIX 9 AA9 ASP A 190 GLY A 203 1 14 HELIX 10 AB1 PRO A 204 ALA A 206 5 3 HELIX 11 AB2 GLY A 220 GLN A 225 5 6 HELIX 12 AB3 GLY A 226 GLY A 243 1 18 HELIX 13 AB4 ARG A 245 ARG A 249 5 5 HELIX 14 AB5 THR A 261 GLY A 276 1 16 HELIX 15 AB6 LEU A 309 THR A 324 1 16 HELIX 16 AB7 SER A 338 GLY A 349 1 12 HELIX 17 AB8 THR A 357 GLY A 363 1 7 HELIX 18 AB9 PRO A 365 GLN A 381 1 17 HELIX 19 AC1 GLY A 385 ILE A 390 1 6 HELIX 20 AC2 GLY A 391 ARG A 395 5 5 SHEET 1 AA1 2 VAL A 81 VAL A 83 0 SHEET 2 AA1 2 HIS A 86 PHE A 88 -1 O PHE A 88 N VAL A 81 SHEET 1 AA2 9 VAL A 92 ILE A 94 0 SHEET 2 AA2 9 PHE A 115 VAL A 121 1 O PHE A 115 N ILE A 94 SHEET 3 AA2 9 LEU A 178 LEU A 182 1 O GLY A 179 N VAL A 116 SHEET 4 AA2 9 TYR A 208 ASN A 212 1 O VAL A 210 N LEU A 182 SHEET 5 AA2 9 ALA A 251 ILE A 256 1 O LEU A 253 N LEU A 209 SHEET 6 AA2 9 GLY A 279 VAL A 282 1 O ILE A 281 N VAL A 254 SHEET 7 AA2 9 ILE A 330 VAL A 333 1 O ILE A 331 N VAL A 282 SHEET 8 AA2 9 LEU A 352 LEU A 355 1 O LEU A 352 N GLY A 332 SHEET 9 AA2 9 VAL A 92 ILE A 94 1 N GLY A 93 O VAL A 353 SHEET 1 AA3 3 VAL A 134 LEU A 137 0 SHEET 2 AA3 3 ALA A 142 ASN A 145 -1 O ILE A 144 N PHE A 135 SHEET 3 AA3 3 GLY A 303 GLY A 306 -1 O SER A 305 N VAL A 143 CISPEP 1 GLY A 119 SER A 120 0 4.56 CISPEP 2 ARG A 131 PRO A 132 0 -1.57 CISPEP 3 VAL A 282 THR A 283 0 11.72 SITE 1 AC1 4 ARG A 245 VAL A 247 HIS A 248 HOH A 663 SITE 1 AC2 6 GLN A 165 PRO A 204 HIS A 248 ARG A 298 SITE 2 AC2 6 SER A 299 HOH A 505 SITE 1 AC3 5 HIS A 86 ARG A 246 VAL A 247 ARG A 249 SITE 2 AC3 5 HOH A 557 SITE 1 AC4 4 ALA A 219 GLY A 220 ARG A 222 HOH A 564 SITE 1 AC5 25 ALA A 95 ALA A 96 GLY A 97 LYS A 100 SITE 2 AC5 25 SER A 120 ASN A 145 TYR A 147 ASN A 181 SITE 3 AC5 25 ASN A 212 LYS A 255 THR A 283 ASN A 284 SITE 4 AC5 25 THR A 285 SER A 305 GLY A 306 LEU A 309 SITE 5 AC5 25 VAL A 333 GLY A 334 GLY A 335 LEU A 355 SITE 6 AC5 25 TYR A 356 THR A 357 ORO A 406 HOH A 561 SITE 7 AC5 25 HOH A 583 SITE 1 AC6 11 LYS A 100 ASN A 145 TYR A 147 GLY A 148 SITE 2 AC6 11 PHE A 149 ASN A 212 SER A 215 ASN A 217 SITE 3 AC6 11 ASN A 284 THR A 285 FMN A 405 SITE 1 AC7 14 TYR A 38 LEU A 42 MET A 43 LEU A 46 SITE 2 AC7 14 PRO A 52 ALA A 55 ALA A 59 THR A 63 SITE 3 AC7 14 LEU A 67 ARG A 136 TYR A 356 LEU A 359 SITE 4 AC7 14 THR A 360 PRO A 364 SITE 1 AC8 14 PRO A 138 GLU A 139 GLN A 141 PRO A 290 SITE 2 AC8 14 LYS A 307 PRO A 308 ASP A 311 GLN A 315 SITE 3 AC8 14 ARG A 318 GLU A 344 ASP A 393 ARG A 396 SITE 4 AC8 14 HOH A 516 HOH A 549 CRYST1 90.596 90.596 122.803 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011038 0.006373 0.000000 0.00000 SCALE2 0.000000 0.012746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008143 0.00000