HEADER LYASE 04-JAN-19 6J3D TITLE CRYSTAL STRUCTURE OF ACETOLACTATE DECARBOXYLASE FROM BACILLUS SUBTILIS TITLE 2 SUBSPECIES SPIZIZENII IN SPACE GROUP P21212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACETOLACTATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SPIZIZENII (STRAIN SOURCE 3 ATCC 23059 / NRRL B-14472 / W23); SOURCE 4 ORGANISM_TAXID: 655816; SOURCE 5 STRAIN: ATCC 23059 / NRRL B-14472 / W23; SOURCE 6 GENE: ALSD, BSUW23_17695; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENZYME, DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.I.YOON REVDAT 3 22-NOV-23 6J3D 1 JRNL LINK REVDAT 2 20-NOV-19 6J3D 1 JRNL REVDAT 1 13-NOV-19 6J3D 0 JRNL AUTH J.EOM,H.B.OH,S.I.YOON JRNL TITL CRYSTAL STRUCTURE OF ALPHA-ACETOLACTATE DECARBOXYLASE FROM JRNL TITL 2 BACILLUS SUBTILIS SUBSPECIES SPIZIZENI. JRNL REF KOREAN J MICROBIOL. V. 55 9 2019 JRNL REFN ISSN 0440-2413 JRNL DOI 10.7845/KJM.2019.9005 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 54766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2922 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3952 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3773 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2495 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5129 ; 1.578 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6090 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;34.838 ;24.759 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;12.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4284 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 800 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2329 ; 0.913 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 950 ; 0.296 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3781 ; 1.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1444 ; 2.733 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1343 ; 4.243 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 300 6 REMARK 3 1 B 1 B 300 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2975 ; 0.31 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2975 ; 1.88 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1250 28.8890 -14.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.0122 REMARK 3 T33: 0.0686 T12: 0.0212 REMARK 3 T13: -0.0248 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.5964 L22: 1.6595 REMARK 3 L33: 1.2889 L12: -0.3104 REMARK 3 L13: 0.1890 L23: 0.5255 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0068 S13: -0.0266 REMARK 3 S21: 0.0512 S22: 0.0496 S23: -0.1388 REMARK 3 S31: 0.0092 S32: 0.0803 S33: -0.0473 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6390 59.5940 -9.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.0149 REMARK 3 T33: 0.0295 T12: 0.0150 REMARK 3 T13: -0.0042 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6539 L22: 1.4028 REMARK 3 L33: 0.9942 L12: -0.1351 REMARK 3 L13: 0.2108 L23: -0.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0092 S13: 0.0309 REMARK 3 S21: 0.0726 S22: 0.0385 S23: 0.0320 REMARK 3 S31: 0.0119 S32: 0.0987 S33: -0.0547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58087 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 4BT4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 0.08M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE, PH 4.5, 12% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.63800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.82150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.63800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.82150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 LYS A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 ILE A 7 REMARK 465 GLN A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 14 REMARK 465 LYS A 15 REMARK 465 ASP A 16 REMARK 465 GLN A 17 REMARK 465 PRO A 18 REMARK 465 VAL A 19 REMARK 465 SER A 253 REMARK 465 PRO A 254 REMARK 465 GLU A 255 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 LYS B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 ASN B 6 REMARK 465 ILE B 7 REMARK 465 GLN B 8 REMARK 465 VAL B 9 REMARK 465 LEU B 10 REMARK 465 SER B 11 REMARK 465 ARG B 12 REMARK 465 GLY B 13 REMARK 465 GLN B 14 REMARK 465 LYS B 15 REMARK 465 ASP B 16 REMARK 465 GLN B 17 REMARK 465 PRO B 18 REMARK 465 VAL B 19 REMARK 465 GLY B 252 REMARK 465 SER B 253 REMARK 465 PRO B 254 REMARK 465 GLU B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 47 CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 SER B 20 OG REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 115 CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 LYS B 245 CD CE NZ REMARK 470 GLU B 248 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 223 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -170.16 61.04 REMARK 500 SER B 26 -174.32 62.64 REMARK 500 PHE B 90 122.60 -172.67 REMARK 500 ASN B 229 57.89 -97.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 HIS A 193 NE2 104.6 REMARK 620 3 HIS A 204 ND1 97.0 102.7 REMARK 620 4 HOH A 406 O 91.7 153.0 96.5 REMARK 620 5 HOH A 430 O 154.2 94.3 95.8 64.6 REMARK 620 6 HOH A 542 O 95.5 94.1 155.8 62.4 65.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 191 NE2 REMARK 620 2 HIS B 193 NE2 99.9 REMARK 620 3 HIS B 204 ND1 97.8 101.6 REMARK 620 4 HOH B 402 O 90.6 160.1 93.6 REMARK 620 5 HOH B 404 O 159.1 96.4 91.7 70.1 REMARK 620 6 HOH B 545 O 92.4 96.3 157.6 66.2 72.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 DBREF 6J3D A 1 255 UNP E0U503 E0U503_BACPZ 1 255 DBREF 6J3D B 1 255 UNP E0U503 E0U503_BACPZ 1 255 SEQADV 6J3D GLY A -5 UNP E0U503 EXPRESSION TAG SEQADV 6J3D SER A -4 UNP E0U503 EXPRESSION TAG SEQADV 6J3D ALA A -3 UNP E0U503 EXPRESSION TAG SEQADV 6J3D LYS A -2 UNP E0U503 EXPRESSION TAG SEQADV 6J3D ASP A -1 UNP E0U503 EXPRESSION TAG SEQADV 6J3D PRO A 0 UNP E0U503 EXPRESSION TAG SEQADV 6J3D GLY B -5 UNP E0U503 EXPRESSION TAG SEQADV 6J3D SER B -4 UNP E0U503 EXPRESSION TAG SEQADV 6J3D ALA B -3 UNP E0U503 EXPRESSION TAG SEQADV 6J3D LYS B -2 UNP E0U503 EXPRESSION TAG SEQADV 6J3D ASP B -1 UNP E0U503 EXPRESSION TAG SEQADV 6J3D PRO B 0 UNP E0U503 EXPRESSION TAG SEQRES 1 A 261 GLY SER ALA LYS ASP PRO MET LYS ARG GLU SER ASN ILE SEQRES 2 A 261 GLN VAL LEU SER ARG GLY GLN LYS ASP GLN PRO VAL SER SEQRES 3 A 261 GLN ILE TYR GLN VAL SER THR MET THR SER LEU LEU ASP SEQRES 4 A 261 GLY VAL TYR ASP GLY ASP PHE GLU LEU SER GLU ILE PRO SEQRES 5 A 261 LYS TYR GLY ASP PHE GLY ILE GLY THR PHE ASN LYS LEU SEQRES 6 A 261 ASP GLY GLU LEU ILE GLY PHE ASP GLY GLU PHE TYR ARG SEQRES 7 A 261 LEU ARG SER ASP GLY THR ALA THR PRO VAL GLN ASN GLY SEQRES 8 A 261 ASP LEU SER PRO PHE CYS SER PHE THR PHE PHE THR PRO SEQRES 9 A 261 ASP MET THR HIS LYS ILE ASP ALA LYS MET THR ARG GLU SEQRES 10 A 261 GLU PHE GLU LYS GLU ILE ASN SER ILE LEU PRO SER LYS SEQRES 11 A 261 ASN LEU PHE TYR ALA ILE ARG ILE ASP GLY LEU PHE LYS SEQRES 12 A 261 LYS VAL GLN THR ARG THR VAL GLU LEU GLN GLU LYS PRO SEQRES 13 A 261 TYR VAL PRO MET VAL GLU ALA VAL LYS THR GLN PRO ILE SEQRES 14 A 261 PHE ASN PHE ASP ASN VAL ARG GLY THR ILE VAL GLY PHE SEQRES 15 A 261 LEU THR PRO ALA TYR ALA ASN GLY ILE ALA VAL SER GLY SEQRES 16 A 261 TYR HIS LEU HIS PHE ILE ASP GLU GLY ARG ASN SER GLY SEQRES 17 A 261 GLY HIS VAL PHE ASP TYR VAL LEU GLU ASP CYS THR VAL SEQRES 18 A 261 THR ILE SER GLN LYS MET ASN MET ASN LEU ARG LEU PRO SEQRES 19 A 261 ASN THR ALA ASP PHE PHE ASN ALA ASN LEU ASP ASN PRO SEQRES 20 A 261 ASP PHE ALA LYS ASP ILE GLU THR THR GLU GLY SER PRO SEQRES 21 A 261 GLU SEQRES 1 B 261 GLY SER ALA LYS ASP PRO MET LYS ARG GLU SER ASN ILE SEQRES 2 B 261 GLN VAL LEU SER ARG GLY GLN LYS ASP GLN PRO VAL SER SEQRES 3 B 261 GLN ILE TYR GLN VAL SER THR MET THR SER LEU LEU ASP SEQRES 4 B 261 GLY VAL TYR ASP GLY ASP PHE GLU LEU SER GLU ILE PRO SEQRES 5 B 261 LYS TYR GLY ASP PHE GLY ILE GLY THR PHE ASN LYS LEU SEQRES 6 B 261 ASP GLY GLU LEU ILE GLY PHE ASP GLY GLU PHE TYR ARG SEQRES 7 B 261 LEU ARG SER ASP GLY THR ALA THR PRO VAL GLN ASN GLY SEQRES 8 B 261 ASP LEU SER PRO PHE CYS SER PHE THR PHE PHE THR PRO SEQRES 9 B 261 ASP MET THR HIS LYS ILE ASP ALA LYS MET THR ARG GLU SEQRES 10 B 261 GLU PHE GLU LYS GLU ILE ASN SER ILE LEU PRO SER LYS SEQRES 11 B 261 ASN LEU PHE TYR ALA ILE ARG ILE ASP GLY LEU PHE LYS SEQRES 12 B 261 LYS VAL GLN THR ARG THR VAL GLU LEU GLN GLU LYS PRO SEQRES 13 B 261 TYR VAL PRO MET VAL GLU ALA VAL LYS THR GLN PRO ILE SEQRES 14 B 261 PHE ASN PHE ASP ASN VAL ARG GLY THR ILE VAL GLY PHE SEQRES 15 B 261 LEU THR PRO ALA TYR ALA ASN GLY ILE ALA VAL SER GLY SEQRES 16 B 261 TYR HIS LEU HIS PHE ILE ASP GLU GLY ARG ASN SER GLY SEQRES 17 B 261 GLY HIS VAL PHE ASP TYR VAL LEU GLU ASP CYS THR VAL SEQRES 18 B 261 THR ILE SER GLN LYS MET ASN MET ASN LEU ARG LEU PRO SEQRES 19 B 261 ASN THR ALA ASP PHE PHE ASN ALA ASN LEU ASP ASN PRO SEQRES 20 B 261 ASP PHE ALA LYS ASP ILE GLU THR THR GLU GLY SER PRO SEQRES 21 B 261 GLU HET ZN A 301 1 HET ZN B 301 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *334(H2 O) HELIX 1 AA1 THR A 27 ASP A 33 1 7 HELIX 2 AA2 GLU A 44 GLY A 49 1 6 HELIX 3 AA3 ASN A 57 ASP A 60 5 4 HELIX 4 AA4 ARG A 110 LEU A 121 1 12 HELIX 5 AA5 PRO A 153 VAL A 158 1 6 HELIX 6 AA6 LYS A 159 GLN A 161 5 3 HELIX 7 AA7 PRO A 179 ASN A 183 5 5 HELIX 8 AA8 THR A 230 ALA A 236 1 7 HELIX 9 AA9 ASP A 242 GLY A 252 1 11 HELIX 10 AB1 THR B 27 ASP B 33 1 7 HELIX 11 AB2 SER B 43 TYR B 48 5 6 HELIX 12 AB3 ASN B 57 ASP B 60 5 4 HELIX 13 AB4 ARG B 110 LEU B 121 1 12 HELIX 14 AB5 PRO B 153 VAL B 158 1 6 HELIX 15 AB6 PRO B 179 ASN B 183 5 5 HELIX 16 AB7 THR B 230 ALA B 236 1 7 HELIX 17 AB8 ASP B 242 GLU B 251 1 10 SHEET 1 AA114 THR A 78 PRO A 81 0 SHEET 2 AA114 GLU A 69 ARG A 74 -1 N ARG A 72 O THR A 80 SHEET 3 AA114 GLU A 62 PHE A 66 -1 N GLU A 62 O LEU A 73 SHEET 4 AA114 PHE A 51 THR A 55 -1 N GLY A 54 O LEU A 63 SHEET 5 AA114 CYS A 91 THR A 94 -1 O SER A 92 N ILE A 53 SHEET 6 AA114 GLN A 21 VAL A 25 -1 N TYR A 23 O PHE A 93 SHEET 7 AA114 ASN A 222 ARG A 226 1 O ARG A 226 N GLN A 24 SHEET 8 AA114 ASN B 222 ARG B 226 -1 O MET B 223 N LEU A 225 SHEET 9 AA114 GLN B 21 VAL B 25 1 N GLN B 24 O ASN B 224 SHEET 10 AA114 CYS B 91 THR B 94 -1 O PHE B 93 N TYR B 23 SHEET 11 AA114 PHE B 51 THR B 55 -1 N ILE B 53 O SER B 92 SHEET 12 AA114 GLU B 62 PHE B 66 -1 O LEU B 63 N GLY B 54 SHEET 13 AA114 GLU B 69 LEU B 73 -1 O LEU B 73 N GLU B 62 SHEET 14 AA114 ALA B 79 PRO B 81 -1 O THR B 80 N ARG B 72 SHEET 1 AA2 2 PHE A 40 GLU A 41 0 SHEET 2 AA2 2 LEU A 87 SER A 88 -1 O SER A 88 N PHE A 40 SHEET 1 AA3 7 MET A 100 ILE A 104 0 SHEET 2 AA3 7 MET A 108 THR A 109 0 SHEET 3 AA3 7 PHE A 127 ARG A 142 0 SHEET 4 AA3 7 ILE A 163 THR A 178 -1 O VAL A 169 N PHE A 136 SHEET 5 AA3 7 GLY A 189 ASP A 196 -1 O HIS A 193 N VAL A 174 SHEET 6 AA3 7 GLY A 202 LYS A 220 -1 O VAL A 205 N LEU A 192 SHEET 7 AA3 7 MET A 108 THR A 109 -1 N MET A 108 O LEU A 210 SHEET 1 AA4 2 PHE B 40 GLU B 41 0 SHEET 2 AA4 2 LEU B 87 SER B 88 -1 O SER B 88 N PHE B 40 SHEET 1 AA5 7 MET B 100 ILE B 104 0 SHEET 2 AA5 7 MET B 108 THR B 109 0 SHEET 3 AA5 7 PHE B 127 ARG B 142 0 SHEET 4 AA5 7 ILE B 163 THR B 178 -1 O VAL B 169 N PHE B 136 SHEET 5 AA5 7 GLY B 189 ASP B 196 -1 O HIS B 193 N VAL B 174 SHEET 6 AA5 7 GLY B 202 LYS B 220 -1 O GLY B 203 N PHE B 194 SHEET 7 AA5 7 MET B 108 THR B 109 -1 N MET B 108 O LEU B 210 LINK NE2 HIS A 191 ZN ZN A 301 1555 1555 2.13 LINK NE2 HIS A 193 ZN ZN A 301 1555 1555 2.12 LINK ND1 HIS A 204 ZN ZN A 301 1555 1555 2.13 LINK ZN ZN A 301 O HOH A 406 1555 1555 2.21 LINK ZN ZN A 301 O HOH A 430 1555 1555 2.10 LINK ZN ZN A 301 O HOH A 542 1555 1555 2.33 LINK NE2 HIS B 191 ZN ZN B 301 1555 1555 2.11 LINK NE2 HIS B 193 ZN ZN B 301 1555 1555 2.11 LINK ND1 HIS B 204 ZN ZN B 301 1555 1555 2.18 LINK ZN ZN B 301 O HOH B 402 1555 1555 2.18 LINK ZN ZN B 301 O HOH B 404 1555 1555 2.25 LINK ZN ZN B 301 O HOH B 545 1555 1555 2.25 CISPEP 1 LYS A 149 PRO A 150 0 -1.04 CISPEP 2 LYS B 149 PRO B 150 0 -0.68 SITE 1 AC1 6 HIS A 191 HIS A 193 HIS A 204 HOH A 406 SITE 2 AC1 6 HOH A 430 HOH A 542 SITE 1 AC2 6 HIS B 191 HIS B 193 HIS B 204 HOH B 402 SITE 2 AC2 6 HOH B 404 HOH B 545 CRYST1 87.276 129.643 45.721 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021872 0.00000