data_6J3L # _entry.id 6J3L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6J3L pdb_00006j3l 10.2210/pdb6j3l/pdb WWPDB D_1300010321 ? ? BMRB 36233 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of the N-terminal extended protuberant domain of eukaryotic ribosomal stalk protein P0' _pdbx_database_related.db_id 36233 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6J3L _pdbx_database_status.recvd_initial_deposition_date 2019-01-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Choi, K.H.A.' 1 0000-0002-9370-8344 'Lee, K.M.' 2 ? 'Yang, L.' 3 ? 'Wing-Heng Yu, C.' 4 ? 'Banfield, D.K.' 5 ? 'Ito, K.' 6 ? 'Uchiumi, T.' 7 ? 'Wong, K.B.' 8 0000-0002-6984-5373 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 58 _citation.language ? _citation.page_first 3744 _citation.page_last 3754 _citation.title ;Structural and Mutagenesis Studies Evince the Role of the Extended Protuberant Domain of Ribosomal Protein uL10 in Protein Translation. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.9b00528 _citation.pdbx_database_id_PubMed 31419120 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Choi, K.A.' 1 ? primary 'Yang, L.' 2 ? primary 'Lee, K.M.' 3 ? primary 'Yu, C.W.' 4 ? primary 'Banfield, D.K.' 5 ? primary 'Ito, K.' 6 ? primary 'Uchiumi, T.' 7 ? primary 'Wong, K.B.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '60S acidic ribosomal protein P0' _entity.formula_weight 8986.376 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'GSHM is the cloning artefact left after thrombin digestion' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMNKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI SPFSYG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMNKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI SPFSYG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASN n 1 6 LYS n 1 7 VAL n 1 8 GLN n 1 9 ALA n 1 10 PRO n 1 11 ALA n 1 12 ARG n 1 13 PRO n 1 14 GLY n 1 15 ALA n 1 16 ILE n 1 17 ALA n 1 18 PRO n 1 19 LEU n 1 20 SER n 1 21 VAL n 1 22 VAL n 1 23 ILE n 1 24 PRO n 1 25 ALA n 1 26 HIS n 1 27 ASN n 1 28 THR n 1 29 GLY n 1 30 LEU n 1 31 GLY n 1 32 PRO n 1 33 GLU n 1 34 LYS n 1 35 THR n 1 36 SER n 1 37 PHE n 1 38 PHE n 1 39 GLN n 1 40 ALA n 1 41 LEU n 1 42 SER n 1 43 ILE n 1 44 PRO n 1 45 THR n 1 46 LYS n 1 47 ILE n 1 48 SER n 1 49 LYS n 1 50 GLY n 1 51 THR n 1 52 ILE n 1 53 GLU n 1 54 ILE n 1 55 ILE n 1 56 ASN n 1 57 ASP n 1 58 VAL n 1 59 HIS n 1 60 ILE n 1 61 LEU n 1 62 LYS n 1 63 PRO n 1 64 GLY n 1 65 ASP n 1 66 LYS n 1 67 VAL n 1 68 GLY n 1 69 ALA n 1 70 SER n 1 71 GLU n 1 72 ALA n 1 73 THR n 1 74 LEU n 1 75 LEU n 1 76 ASN n 1 77 MET n 1 78 LEU n 1 79 ASN n 1 80 ILE n 1 81 SER n 1 82 PRO n 1 83 PHE n 1 84 SER n 1 85 TYR n 1 86 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 86 _entity_src_gen.gene_src_common_name 'Silk moth' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene p0 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bombyx mori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7091 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q70YZ3_BOMMO _struct_ref.pdbx_db_accession Q70YZ3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFS YG ; _struct_ref.pdbx_align_begin 105 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6J3L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q70YZ3 _struct_ref_seq.db_align_beg 105 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 186 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 105 _struct_ref_seq.pdbx_auth_seq_align_end 186 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6J3L GLY A 1 ? UNP Q70YZ3 ? ? 'cloning artifact' 101 1 1 6J3L SER A 2 ? UNP Q70YZ3 ? ? 'cloning artifact' 102 2 1 6J3L HIS A 3 ? UNP Q70YZ3 ? ? 'cloning artifact' 103 3 1 6J3L MET A 4 ? UNP Q70YZ3 ? ? 'cloning artifact' 104 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D HNCACB' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 3 '2D 1H-1H NOESY' 1 isotropic 5 1 1 '3D HNCA' 1 isotropic 6 1 1 '3D CBCA(CO)NH' 1 isotropic 7 1 1 '3D HNCO' 1 isotropic 8 1 1 '3D HCCH-TOCSY' 1 isotropic 9 1 1 '3D 1H-15N NOESY' 1 isotropic 10 1 1 '3D 1H-13C NOESY' 1 isotropic 11 1 2 '2D 1H-13C HSQC' 1 isotropic 12 1 1 HSQC-NOESY-HSQC 1 isotropic 13 1 1 '3D HN(CO)CA' 1 isotropic 14 1 1 '3D HN(CA)CO' 1 isotropic 15 1 1 '3D 1H-15N TOCSY' 1 isotropic 16 1 1 '3D (H)CC(CO)NH' 1 isotropic 17 1 1 '3D H(CC)(CO)NH' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.15 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;1 mM [U-100% 13C; U-100% 15N] N-terminal extended protuberant domain of P0, 20 mM sodium phosphate, 5 % v/v glycerol, 150 mM sodium chloride, 1 mM TCEP, 90% H2O/10% D2O ; '90% H2O/10% D2O' 15N,13C_sample solution ? 2 ;1 mM [U-10% 13C] N-terminal extended protuberant domain of P0, 20 mM sodium phosphate, 5 % v/v glycerol, 150 mM sodium chloride, 1 mM TCEP, 90% H2O/10% D2O ; '90% H2O/10% D2O' 10%13C_sample solution ? 3 ;1 mM unlabel N-terminal extended protuberant domain of P0, 20 mM sodium phosphate, 5 % v/v glycerol, 150 mM sodium chloride, 1 mM TCEP, 90% H2O/10% D2O ; '90% H2O/10% D2O' unlabel solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6J3L _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 6J3L _pdbx_nmr_ensemble.conformers_calculated_total_number 900 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6J3L _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' ARIA 2.2 ;Linge, O'Donoghue and Nilges ; 2 'structure calculation' CNS 1.2 'Brunger, Adams, Clore, Gros, Nilges and Read' 4 'peak picking' NMRView J8 'Johnson, One Moon Scientific' 5 refinement CNS 1.2 'Brunger, Adams, Clore, Gros, Nilges and Read' 6 collection TopSpin 3.2 'Bruker Biospin' 7 'data analysis' NMRView J8 'Johnson, One Moon Scientific' 8 processing TopSpin 3.2 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6J3L _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6J3L _struct.title 'Solution structure of the N-terminal extended protuberant domain of eukaryotic ribosomal stalk protein P0' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6J3L _struct_keywords.text 'P0, RIBOSOMAL PROTEIN' _struct_keywords.pdbx_keywords 'RIBOSOMAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 34 ? LEU A 41 ? LYS A 134 LEU A 141 1 ? 8 HELX_P HELX_P2 AA2 GLY A 68 ? LEU A 78 ? GLY A 168 LEU A 178 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 14 ? ALA A 17 ? GLY A 114 ALA A 117 AA1 2 GLY A 64 ? VAL A 67 ? GLY A 164 VAL A 167 AA2 1 THR A 45 ? ILE A 47 ? THR A 145 ILE A 147 AA2 2 ILE A 52 ? ILE A 54 ? ILE A 152 ILE A 154 AA3 1 VAL A 21 ? ILE A 23 ? VAL A 121 ILE A 123 AA3 2 VAL A 58 ? LEU A 61 ? VAL A 158 LEU A 161 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 17 ? N ALA A 117 O ASP A 65 ? O ASP A 165 AA2 1 2 N LYS A 46 ? N LYS A 146 O GLU A 53 ? O GLU A 153 # _atom_sites.entry_id 6J3L _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 101 ? ? ? A . n A 1 2 SER 2 102 ? ? ? A . n A 1 3 HIS 3 103 ? ? ? A . n A 1 4 MET 4 104 104 MET MET A . n A 1 5 ASN 5 105 105 ASN ASN A . n A 1 6 LYS 6 106 106 LYS LYS A . n A 1 7 VAL 7 107 107 VAL VAL A . n A 1 8 GLN 8 108 108 GLN GLN A . n A 1 9 ALA 9 109 109 ALA ALA A . n A 1 10 PRO 10 110 110 PRO PRO A . n A 1 11 ALA 11 111 111 ALA ALA A . n A 1 12 ARG 12 112 112 ARG ARG A . n A 1 13 PRO 13 113 113 PRO PRO A . n A 1 14 GLY 14 114 114 GLY GLY A . n A 1 15 ALA 15 115 115 ALA ALA A . n A 1 16 ILE 16 116 116 ILE ILE A . n A 1 17 ALA 17 117 117 ALA ALA A . n A 1 18 PRO 18 118 118 PRO PRO A . n A 1 19 LEU 19 119 119 LEU LEU A . n A 1 20 SER 20 120 120 SER SER A . n A 1 21 VAL 21 121 121 VAL VAL A . n A 1 22 VAL 22 122 122 VAL VAL A . n A 1 23 ILE 23 123 123 ILE ILE A . n A 1 24 PRO 24 124 124 PRO PRO A . n A 1 25 ALA 25 125 125 ALA ALA A . n A 1 26 HIS 26 126 126 HIS HIS A . n A 1 27 ASN 27 127 127 ASN ASN A . n A 1 28 THR 28 128 128 THR THR A . n A 1 29 GLY 29 129 129 GLY GLY A . n A 1 30 LEU 30 130 130 LEU LEU A . n A 1 31 GLY 31 131 131 GLY GLY A . n A 1 32 PRO 32 132 132 PRO PRO A . n A 1 33 GLU 33 133 133 GLU GLU A . n A 1 34 LYS 34 134 134 LYS LYS A . n A 1 35 THR 35 135 135 THR THR A . n A 1 36 SER 36 136 136 SER SER A . n A 1 37 PHE 37 137 137 PHE PHE A . n A 1 38 PHE 38 138 138 PHE PHE A . n A 1 39 GLN 39 139 139 GLN GLN A . n A 1 40 ALA 40 140 140 ALA ALA A . n A 1 41 LEU 41 141 141 LEU LEU A . n A 1 42 SER 42 142 142 SER SER A . n A 1 43 ILE 43 143 143 ILE ILE A . n A 1 44 PRO 44 144 144 PRO PRO A . n A 1 45 THR 45 145 145 THR THR A . n A 1 46 LYS 46 146 146 LYS LYS A . n A 1 47 ILE 47 147 147 ILE ILE A . n A 1 48 SER 48 148 148 SER SER A . n A 1 49 LYS 49 149 149 LYS LYS A . n A 1 50 GLY 50 150 150 GLY GLY A . n A 1 51 THR 51 151 151 THR THR A . n A 1 52 ILE 52 152 152 ILE ILE A . n A 1 53 GLU 53 153 153 GLU GLU A . n A 1 54 ILE 54 154 154 ILE ILE A . n A 1 55 ILE 55 155 155 ILE ILE A . n A 1 56 ASN 56 156 156 ASN ASN A . n A 1 57 ASP 57 157 157 ASP ASP A . n A 1 58 VAL 58 158 158 VAL VAL A . n A 1 59 HIS 59 159 159 HIS HIS A . n A 1 60 ILE 60 160 160 ILE ILE A . n A 1 61 LEU 61 161 161 LEU LEU A . n A 1 62 LYS 62 162 162 LYS LYS A . n A 1 63 PRO 63 163 163 PRO PRO A . n A 1 64 GLY 64 164 164 GLY GLY A . n A 1 65 ASP 65 165 165 ASP ASP A . n A 1 66 LYS 66 166 166 LYS LYS A . n A 1 67 VAL 67 167 167 VAL VAL A . n A 1 68 GLY 68 168 168 GLY GLY A . n A 1 69 ALA 69 169 169 ALA ALA A . n A 1 70 SER 70 170 170 SER SER A . n A 1 71 GLU 71 171 171 GLU GLU A . n A 1 72 ALA 72 172 172 ALA ALA A . n A 1 73 THR 73 173 173 THR THR A . n A 1 74 LEU 74 174 174 LEU LEU A . n A 1 75 LEU 75 175 175 LEU LEU A . n A 1 76 ASN 76 176 176 ASN ASN A . n A 1 77 MET 77 177 177 MET MET A . n A 1 78 LEU 78 178 178 LEU LEU A . n A 1 79 ASN 79 179 179 ASN ASN A . n A 1 80 ILE 80 180 180 ILE ILE A . n A 1 81 SER 81 181 181 SER SER A . n A 1 82 PRO 82 182 182 PRO PRO A . n A 1 83 PHE 83 183 183 PHE PHE A . n A 1 84 SER 84 184 184 SER SER A . n A 1 85 TYR 85 185 185 TYR TYR A . n A 1 86 GLY 86 186 186 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 4810 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-04 2 'Structure model' 1 1 2019-09-25 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 8 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'N-terminal extended protuberant domain of P0' 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate' 20 ? mM 'natural abundance' 1 glycerol 5 ? '% v/v' 'natural abundance' 1 'sodium chloride' 150 ? mM 'natural abundance' 1 TCEP 1 ? mM 'natural abundance' 2 'N-terminal extended protuberant domain of P0' 1 ? mM '[U-10% 13C]' 2 'sodium phosphate' 20 ? mM 'natural abundance' 2 glycerol 5 ? '% v/v' 'natural abundance' 2 'sodium chloride' 150 ? mM 'natural abundance' 2 TCEP 1 ? mM 'natural abundance' 3 'N-terminal extended protuberant domain of P0' 1 ? mM unlabel 3 'sodium phosphate' 20 ? mM 'natural abundance' 3 glycerol 5 ? '% v/v' 'natural abundance' 3 'sodium chloride' 150 ? mM 'natural abundance' 3 TCEP 1 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 105 ? ? -138.95 -58.94 2 1 LYS A 106 ? ? -108.14 54.79 3 1 PRO A 110 ? ? -63.79 86.36 4 1 SER A 148 ? ? -99.96 -83.33 5 1 LYS A 149 ? ? -113.36 53.34 6 1 PRO A 163 ? ? -56.56 101.87 7 1 PHE A 183 ? ? -135.50 -79.21 8 2 ASN A 105 ? ? -149.06 -38.18 9 2 PRO A 110 ? ? -63.29 84.18 10 2 PRO A 132 ? ? -69.38 6.58 11 2 PRO A 163 ? ? -44.85 108.89 12 2 PHE A 183 ? ? -120.23 -70.32 13 3 ASN A 105 ? ? -160.56 -72.89 14 3 VAL A 107 ? ? -104.15 70.95 15 3 GLN A 108 ? ? -162.39 95.18 16 3 PRO A 110 ? ? -64.50 74.68 17 3 HIS A 126 ? ? -151.79 -56.69 18 3 LYS A 149 ? ? -170.64 -67.77 19 3 PRO A 163 ? ? -44.00 101.48 20 3 PHE A 183 ? ? -113.85 -76.36 21 4 VAL A 107 ? ? -72.48 -73.20 22 4 PRO A 110 ? ? -66.06 78.69 23 4 LYS A 149 ? ? -156.18 60.05 24 4 PRO A 163 ? ? -54.02 100.82 25 4 PHE A 183 ? ? -109.16 -73.85 26 5 ASN A 105 ? ? -145.32 -56.49 27 5 GLN A 108 ? ? 67.19 92.67 28 5 LYS A 149 ? ? -168.27 -70.88 29 5 PRO A 163 ? ? -54.64 105.86 30 5 SER A 181 ? ? 60.76 71.87 31 5 PHE A 183 ? ? -125.62 -61.37 32 6 PRO A 110 ? ? -58.40 96.26 33 6 LYS A 149 ? ? -158.51 81.76 34 6 PRO A 163 ? ? -51.32 103.81 35 6 ALA A 169 ? ? -70.11 -70.33 36 6 PHE A 183 ? ? -120.90 -125.15 37 6 SER A 184 ? ? -108.12 -73.39 38 7 ASN A 105 ? ? -163.33 -60.60 39 7 LYS A 106 ? ? -111.29 -72.25 40 7 VAL A 107 ? ? -160.87 46.32 41 7 PRO A 110 ? ? -68.43 93.84 42 7 LYS A 149 ? ? -163.30 -58.73 43 7 PRO A 163 ? ? -55.86 96.01 44 7 PHE A 183 ? ? -130.30 -89.39 45 8 LYS A 106 ? ? 55.03 76.52 46 8 PRO A 110 ? ? -55.65 106.51 47 8 HIS A 126 ? ? -158.78 -50.53 48 8 ASN A 127 ? ? 173.57 150.19 49 8 SER A 148 ? ? -74.86 -72.34 50 8 PRO A 163 ? ? -44.87 106.15 51 8 PHE A 183 ? ? -132.20 -73.39 52 9 LYS A 106 ? ? 38.48 59.28 53 9 PRO A 110 ? ? -58.36 92.57 54 9 SER A 148 ? ? -80.13 -80.78 55 9 PRO A 163 ? ? -54.33 100.20 56 9 SER A 181 ? ? 60.21 72.47 57 9 PHE A 183 ? ? -123.14 -63.15 58 10 PRO A 110 ? ? -58.88 96.40 59 10 ALA A 125 ? ? -68.56 83.52 60 10 LEU A 141 ? ? -91.38 31.41 61 10 LYS A 149 ? ? -173.96 -66.31 62 10 SER A 181 ? ? 59.37 82.34 63 10 PHE A 183 ? ? -119.95 -96.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 101 ? A GLY 1 2 1 Y 1 A SER 102 ? A SER 2 3 1 Y 1 A HIS 103 ? A HIS 3 4 2 Y 1 A GLY 101 ? A GLY 1 5 2 Y 1 A SER 102 ? A SER 2 6 2 Y 1 A HIS 103 ? A HIS 3 7 3 Y 1 A GLY 101 ? A GLY 1 8 3 Y 1 A SER 102 ? A SER 2 9 3 Y 1 A HIS 103 ? A HIS 3 10 4 Y 1 A GLY 101 ? A GLY 1 11 4 Y 1 A SER 102 ? A SER 2 12 4 Y 1 A HIS 103 ? A HIS 3 13 5 Y 1 A GLY 101 ? A GLY 1 14 5 Y 1 A SER 102 ? A SER 2 15 5 Y 1 A HIS 103 ? A HIS 3 16 6 Y 1 A GLY 101 ? A GLY 1 17 6 Y 1 A SER 102 ? A SER 2 18 6 Y 1 A HIS 103 ? A HIS 3 19 7 Y 1 A GLY 101 ? A GLY 1 20 7 Y 1 A SER 102 ? A SER 2 21 7 Y 1 A HIS 103 ? A HIS 3 22 8 Y 1 A GLY 101 ? A GLY 1 23 8 Y 1 A SER 102 ? A SER 2 24 8 Y 1 A HIS 103 ? A HIS 3 25 9 Y 1 A GLY 101 ? A GLY 1 26 9 Y 1 A SER 102 ? A SER 2 27 9 Y 1 A HIS 103 ? A HIS 3 28 10 Y 1 A GLY 101 ? A GLY 1 29 10 Y 1 A SER 102 ? A SER 2 30 10 Y 1 A HIS 103 ? A HIS 3 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'The University Grants Committee, Research Grants Council (RGC)' 'Hong Kong' CUHK14122015 1 'The University Grants Committee, Research Grants Council (RGC)' 'Hong Kong' AoE/M-403/16 2 'The University Grants Committee, Research Grants Council (RGC)' 'Hong Kong' AoE/M-05/12 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #