HEADER HYDROLASE 09-JAN-19 6J4H TITLE CRYSTAL STRUCTURE OF MALTOTRIOSE-COMPLEX OF PULA-G680L MUTANT FROM TITLE 2 KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULLULANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PULA PROTEIN,PULLULANASE-TYPE ALPHA-1,6-GLUCOSIDASE,DUF3372 COMPND 5 DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 ATCC: 9621; SOURCE 5 GENE: PULA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PULLULANASE, KLEBSIELLA PNEUMONIAE, LIGAND-FREE, G680, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SAKA,H.IWAMOTO,N.TAKAHASHI,K.MIZUTANI,B.MIKAMI REVDAT 2 29-JUL-20 6J4H 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 18-SEP-19 6J4H 0 JRNL AUTH N.SAKA,D.MALLE,H.IWAMOTO,N.TAKAHASHI,K.MIZUTANI,B.MIKAMI JRNL TITL RELATIONSHIP BETWEEN THE INDUCED-FIT LOOP AND THE ACTIVITY JRNL TITL 2 OF KLEBSIELLA PNEUMONIAE PULLULANASE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 792 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31478902 JRNL DOI 10.1107/S2059798319010660 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 131547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 6530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2578 - 5.0949 0.99 4308 218 0.1809 0.1921 REMARK 3 2 5.0949 - 4.0455 1.00 4252 217 0.1430 0.1480 REMARK 3 3 4.0455 - 3.5345 1.00 4202 227 0.1518 0.1718 REMARK 3 4 3.5345 - 3.2115 1.00 4219 226 0.1648 0.1794 REMARK 3 5 3.2115 - 2.9814 1.00 4183 209 0.1677 0.1827 REMARK 3 6 2.9814 - 2.8057 1.00 4227 217 0.1734 0.1855 REMARK 3 7 2.8057 - 2.6652 1.00 4184 185 0.1663 0.1876 REMARK 3 8 2.6652 - 2.5492 1.00 4184 245 0.1632 0.1734 REMARK 3 9 2.5492 - 2.4511 1.00 4183 203 0.1668 0.1905 REMARK 3 10 2.4511 - 2.3665 1.00 4146 231 0.1631 0.1953 REMARK 3 11 2.3665 - 2.2926 1.00 4157 207 0.1610 0.1699 REMARK 3 12 2.2926 - 2.2270 1.00 4176 187 0.1678 0.1875 REMARK 3 13 2.2270 - 2.1684 1.00 4174 230 0.1607 0.1970 REMARK 3 14 2.1684 - 2.1155 1.00 4168 219 0.1583 0.1682 REMARK 3 15 2.1155 - 2.0674 1.00 4143 224 0.1575 0.1776 REMARK 3 16 2.0674 - 2.0234 1.00 4187 237 0.1573 0.1933 REMARK 3 17 2.0234 - 1.9829 1.00 4130 206 0.1595 0.1678 REMARK 3 18 1.9829 - 1.9455 1.00 4188 210 0.1624 0.1914 REMARK 3 19 1.9455 - 1.9108 1.00 4140 223 0.1652 0.2030 REMARK 3 20 1.9108 - 1.8784 1.00 4152 219 0.1678 0.1894 REMARK 3 21 1.8784 - 1.8481 1.00 4159 231 0.1690 0.2061 REMARK 3 22 1.8481 - 1.8197 1.00 4109 218 0.1721 0.1960 REMARK 3 23 1.8197 - 1.7929 1.00 4199 227 0.1733 0.1962 REMARK 3 24 1.7929 - 1.7677 1.00 4122 203 0.1825 0.2281 REMARK 3 25 1.7677 - 1.7438 1.00 4200 199 0.1890 0.2485 REMARK 3 26 1.7438 - 1.7211 1.00 4165 200 0.1930 0.2095 REMARK 3 27 1.7211 - 1.6996 1.00 4148 238 0.1844 0.2103 REMARK 3 28 1.6996 - 1.6791 1.00 4087 223 0.1956 0.2050 REMARK 3 29 1.6791 - 1.6596 1.00 4151 244 0.1972 0.2244 REMARK 3 30 1.6596 - 1.6410 0.96 3963 207 0.2081 0.2368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7448 REMARK 3 ANGLE : 0.804 10158 REMARK 3 CHIRALITY : 0.053 1143 REMARK 3 PLANARITY : 0.005 1337 REMARK 3 DIHEDRAL : 16.238 4461 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.641 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE BUFFER (PH 6.0), REMARK 280 0.2M MAGNESIUM ACETATE, 20%(W/V) PEG 6000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.47150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.05150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.47150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.05150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1933 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 31 REMARK 465 PRO A 38 REMARK 465 ASP A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 VAL A 42 REMARK 465 PRO A 43 REMARK 465 GLY A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 VAL A 47 REMARK 465 GLN A 48 REMARK 465 ALA A 49 REMARK 465 SER A 50 REMARK 465 ALA A 51 REMARK 465 ARG A 52 REMARK 465 GLN A 53 REMARK 465 ALA A 54 REMARK 465 VAL A 55 REMARK 465 ILE A 56 REMARK 465 HIS A 57 REMARK 465 LEU A 58 REMARK 465 VAL A 59 REMARK 465 ASP A 60 REMARK 465 ILE A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 ILE A 64 REMARK 465 THR A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 THR A 68 REMARK 465 PRO A 69 REMARK 465 ALA A 70 REMARK 465 ASP A 71 REMARK 465 TYR A 72 REMARK 465 ALA A 73 REMARK 465 THR A 74 REMARK 465 LYS A 75 REMARK 465 ASN A 76 REMARK 465 LEU A 77 REMARK 465 TYR A 78 REMARK 465 LEU A 79 REMARK 465 TRP A 80 REMARK 465 ASN A 81 REMARK 465 ASN A 82 REMARK 465 GLU A 83 REMARK 465 THR A 84 REMARK 465 CYS A 85 REMARK 465 ASP A 86 REMARK 465 ALA A 87 REMARK 465 LEU A 88 REMARK 465 SER A 89 REMARK 465 ALA A 90 REMARK 465 PRO A 91 REMARK 465 VAL A 92 REMARK 465 ALA A 93 REMARK 465 ASP A 94 REMARK 465 TRP A 95 REMARK 465 ASN A 96 REMARK 465 ASP A 97 REMARK 465 VAL A 98 REMARK 465 SER A 99 REMARK 465 THR A 100 REMARK 465 THR A 101 REMARK 465 PRO A 102 REMARK 465 THR A 103 REMARK 465 GLY A 104 REMARK 465 SER A 105 REMARK 465 ASP A 106 REMARK 465 LYS A 107 REMARK 465 TYR A 108 REMARK 465 GLY A 109 REMARK 465 PRO A 110 REMARK 465 TYR A 111 REMARK 465 TRP A 112 REMARK 465 VAL A 113 REMARK 465 ILE A 114 REMARK 465 PRO A 115 REMARK 465 LEU A 116 REMARK 465 THR A 117 REMARK 465 LYS A 118 REMARK 465 GLU A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 CYS A 122 REMARK 465 ILE A 123 REMARK 465 ASN A 124 REMARK 465 VAL A 125 REMARK 465 ILE A 126 REMARK 465 VAL A 127 REMARK 465 ARG A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 THR A 131 REMARK 465 ASN A 132 REMARK 465 LYS A 133 REMARK 465 LEU A 134 REMARK 465 ILE A 135 REMARK 465 ASP A 136 REMARK 465 SER A 137 REMARK 465 ASP A 138 REMARK 465 LEU A 139 REMARK 465 ARG A 140 REMARK 465 VAL A 141 REMARK 465 SER A 142 REMARK 465 PHE A 143 REMARK 465 SER A 144 REMARK 465 ASP A 145 REMARK 465 PHE A 146 REMARK 465 THR A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 149 REMARK 465 THR A 150 REMARK 465 VAL A 151 REMARK 465 SER A 152 REMARK 465 VAL A 153 REMARK 465 ILE A 154 REMARK 465 ALA A 155 REMARK 465 GLY A 156 REMARK 465 ASN A 157 REMARK 465 SER A 158 REMARK 465 ALA A 159 REMARK 465 VAL A 160 REMARK 465 TYR A 161 REMARK 465 ASP A 162 REMARK 465 SER A 163 REMARK 465 ARG A 164 REMARK 465 ALA A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 PHE A 168 REMARK 465 ARG A 169 REMARK 465 ALA A 170 REMARK 465 ALA A 171 REMARK 465 PHE A 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 176 -170.56 61.01 REMARK 500 ALA A 177 58.25 -152.07 REMARK 500 ASN A 194 -0.65 63.64 REMARK 500 ALA A 312 70.60 -152.57 REMARK 500 PRO A 478 111.74 -32.87 REMARK 500 ASP A 519 54.91 -118.66 REMARK 500 ASN A 539 71.20 -155.16 REMARK 500 VAL A 619 -63.91 -107.67 REMARK 500 CYS A 643 -33.70 140.04 REMARK 500 CYS A 644 -131.22 -136.98 REMARK 500 ASN A 835 -178.10 65.92 REMARK 500 ASN A 835 -178.10 74.17 REMARK 500 THR A 963 57.48 -141.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1113 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 481 OD1 REMARK 620 2 LEU A 482 O 89.6 REMARK 620 3 GLU A 487 OE2 98.8 171.4 REMARK 620 4 GLU A 568 OE2 92.7 94.1 83.8 REMARK 620 5 HOH A1280 O 169.7 80.4 91.1 85.7 REMARK 620 6 HOH A1554 O 92.2 91.2 90.2 172.8 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 550 O REMARK 620 2 ASP A 553 OD1 86.2 REMARK 620 3 TYR A 555 O 174.1 87.9 REMARK 620 4 ASP A 893 OD1 90.0 143.5 94.6 REMARK 620 5 HOH A1440 O 87.7 74.1 91.0 142.1 REMARK 620 6 HOH A1443 O 96.2 74.2 81.8 70.2 147.7 REMARK 620 7 HOH A1673 O 98.0 142.3 86.9 74.1 68.7 141.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1112 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 994 OD2 REMARK 620 2 SER A1001 OG 88.0 REMARK 620 3 ASP A1003 O 98.5 87.4 REMARK 620 4 VAL A1006 O 92.4 178.8 91.4 REMARK 620 5 GLN A1070 OE1 169.8 95.2 91.3 84.6 REMARK 620 6 HOH A1297 O 91.2 89.2 169.6 92.0 79.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1107 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1204 O REMARK 620 2 HOH A1213 O 86.2 REMARK 620 3 HOH A1224 O 90.0 96.6 REMARK 620 4 HOH A1228 O 170.9 87.2 84.5 REMARK 620 5 HOH A1919 O 92.1 81.5 177.0 93.1 REMARK 620 6 HOH A1959 O 96.9 175.0 87.2 90.1 94.5 REMARK 620 N 1 2 3 4 5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N229S WAS DUE TO SPONTANEOUS MUTATION. DBREF 6J4H A 32 1083 UNP W9BQ28 W9BQ28_KLEPN 51 1102 SEQADV 6J4H MET A 31 UNP W9BQ28 INITIATING METHIONINE SEQADV 6J4H SER A 229 UNP W9BQ28 ASN 248 SEE SEQUENCE DETAILS SEQADV 6J4H LEU A 680 UNP W9BQ28 GLY 699 ENGINEERED MUTATION SEQRES 1 A 1053 MET ASP VAL VAL VAL ARG LEU PRO ASP VAL ALA VAL PRO SEQRES 2 A 1053 GLY GLU ALA VAL GLN ALA SER ALA ARG GLN ALA VAL ILE SEQRES 3 A 1053 HIS LEU VAL ASP ILE ALA GLY ILE THR SER SER THR PRO SEQRES 4 A 1053 ALA ASP TYR ALA THR LYS ASN LEU TYR LEU TRP ASN ASN SEQRES 5 A 1053 GLU THR CYS ASP ALA LEU SER ALA PRO VAL ALA ASP TRP SEQRES 6 A 1053 ASN ASP VAL SER THR THR PRO THR GLY SER ASP LYS TYR SEQRES 7 A 1053 GLY PRO TYR TRP VAL ILE PRO LEU THR LYS GLU SER GLY SEQRES 8 A 1053 CYS ILE ASN VAL ILE VAL ARG ASP GLY THR ASN LYS LEU SEQRES 9 A 1053 ILE ASP SER ASP LEU ARG VAL SER PHE SER ASP PHE THR SEQRES 10 A 1053 ASP ARG THR VAL SER VAL ILE ALA GLY ASN SER ALA VAL SEQRES 11 A 1053 TYR ASP SER ARG ALA ASP ALA PHE ARG ALA ALA PHE GLY SEQRES 12 A 1053 VAL ALA LEU ALA ASP ALA HIS TRP VAL ASP LYS THR THR SEQRES 13 A 1053 LEU LEU TRP PRO GLY GLY GLU ASN LYS PRO ILE VAL ARG SEQRES 14 A 1053 LEU TYR TYR SER HIS SER SER LYS VAL ALA ALA ASP SER SEQRES 15 A 1053 ASN GLY GLU PHE SER ASP LYS TYR VAL LYS LEU THR PRO SEQRES 16 A 1053 THR THR VAL SER GLN GLN VAL SER MET ARG PHE PRO HIS SEQRES 17 A 1053 LEU ALA SER TYR PRO ALA PHE LYS LEU PRO ASP ASP VAL SEQRES 18 A 1053 ASN VAL ASP GLU LEU LEU GLN GLY GLU THR VAL ALA ILE SEQRES 19 A 1053 ALA ALA GLU SER ASP GLY ILE LEU SER SER ALA THR GLN SEQRES 20 A 1053 VAL GLN THR ALA GLY VAL LEU ASP ASP THR TYR ALA ALA SEQRES 21 A 1053 ALA ALA GLU ALA LEU SER TYR GLY ALA GLN LEU THR ASP SEQRES 22 A 1053 SER GLY VAL THR PHE ARG VAL TRP ALA PRO THR ALA GLN SEQRES 23 A 1053 GLN VAL GLU LEU VAL ILE TYR SER ALA ASP LYS LYS VAL SEQRES 24 A 1053 ILE ALA SER HIS PRO MET THR ARG ASP SER ALA SER GLY SEQRES 25 A 1053 ALA TRP SER TRP GLN GLY GLY SER ASP LEU LYS GLY ALA SEQRES 26 A 1053 PHE TYR ARG TYR ALA MET THR VAL TYR HIS PRO GLN SER SEQRES 27 A 1053 ARG LYS VAL GLU GLN TYR GLU VAL THR ASP PRO TYR ALA SEQRES 28 A 1053 HIS SER LEU SER THR ASN SER GLU TYR SER GLN VAL VAL SEQRES 29 A 1053 ASP LEU ASN ASP SER ALA LEU LYS PRO GLU GLY TRP ASP SEQRES 30 A 1053 GLY LEU THR MET PRO HIS ALA GLN LYS THR LYS ALA ASP SEQRES 31 A 1053 LEU ALA LYS MET THR ILE HIS GLU SER HIS ILE ARG ASP SEQRES 32 A 1053 LEU SER ALA TRP ASP GLN THR VAL PRO ALA GLU LEU ARG SEQRES 33 A 1053 GLY LYS TYR LEU ALA LEU THR ALA GLN GLU SER ASN MET SEQRES 34 A 1053 VAL GLN HIS LEU LYS GLN LEU SER ALA SER GLY VAL THR SEQRES 35 A 1053 HIS ILE GLU LEU LEU PRO VAL PHE ASP LEU ALA THR VAL SEQRES 36 A 1053 ASN GLU PHE SER ASP LYS VAL ALA ASP ILE GLN GLN PRO SEQRES 37 A 1053 PHE SER ARG LEU CYS GLU VAL ASN SER ALA VAL LYS SER SEQRES 38 A 1053 SER GLU PHE ALA GLY TYR CYS ASP SER GLY SER THR VAL SEQRES 39 A 1053 GLU GLU VAL LEU THR GLN LEU LYS GLN ASN ASP SER LYS SEQRES 40 A 1053 ASP ASN PRO GLN VAL GLN ALA LEU ASN THR LEU VAL ALA SEQRES 41 A 1053 GLN THR ASP SER TYR ASN TRP GLY TYR ASP PRO PHE HIS SEQRES 42 A 1053 TYR THR VAL PRO GLU GLY SER TYR ALA THR ASP PRO GLU SEQRES 43 A 1053 GLY THR ALA ARG ILE LYS GLU PHE ARG THR MET ILE GLN SEQRES 44 A 1053 ALA ILE LYS GLN ASP LEU GLY MET ASN VAL ILE MET ASP SEQRES 45 A 1053 VAL VAL TYR ASN HIS THR ASN ALA ALA GLY PRO THR ASP SEQRES 46 A 1053 ARG THR SER VAL LEU ASP LYS ILE VAL PRO TRP TYR TYR SEQRES 47 A 1053 GLN ARG LEU ASN GLU THR THR GLY SER VAL GLU SER ALA SEQRES 48 A 1053 THR CYS CYS SER ASP SER ALA PRO GLU HIS ARG MET PHE SEQRES 49 A 1053 ALA LYS LEU ILE ALA ASP SER LEU ALA VAL TRP THR THR SEQRES 50 A 1053 ASP TYR LYS ILE ASP GLY PHE ARG PHE ASP LEU MET LEU SEQRES 51 A 1053 TYR HIS PRO LYS ALA GLN ILE LEU SER ALA TRP GLU ARG SEQRES 52 A 1053 ILE LYS ALA LEU ASN PRO ASP ILE TYR PHE PHE GLY GLU SEQRES 53 A 1053 GLY TRP ASP SER ASN GLN SER ASP ARG PHE GLU ILE ALA SEQRES 54 A 1053 SER GLN ILE ASN LEU LYS GLY THR GLY ILE GLY THR PHE SEQRES 55 A 1053 SER ASP ARG LEU ARG ASP ALA VAL ARG GLY GLY GLY PRO SEQRES 56 A 1053 PHE ASP SER GLY ASP ALA LEU ARG GLN ASN GLN GLY VAL SEQRES 57 A 1053 GLY SER GLY ALA GLY VAL LEU PRO ASN GLU LEU THR THR SEQRES 58 A 1053 LEU SER ASP ASP GLN ALA ARG HIS LEU ALA ASP LEU THR SEQRES 59 A 1053 ARG LEU GLY MET ALA GLY ASN LEU ALA ASP PHE VAL LEU SEQRES 60 A 1053 ILE ASP LYS ASP GLY ALA VAL LYS ARG GLY SER GLU ILE SEQRES 61 A 1053 ASP TYR ASN GLY ALA PRO GLY GLY TYR ALA ALA ASP PRO SEQRES 62 A 1053 THR GLU VAL VAL ASN TYR VAL SER LYS HIS ASP ASN GLN SEQRES 63 A 1053 THR LEU TRP ASP MET ILE SER TYR LYS ALA ALA GLN GLU SEQRES 64 A 1053 ALA ASP LEU ASP THR ARG VAL ARG MET GLN ALA VAL SER SEQRES 65 A 1053 LEU ALA THR VAL MET LEU GLY GLN GLY ILE ALA PHE ASP SEQRES 66 A 1053 GLN GLN GLY SER GLU LEU LEU ARG SER LYS SER PHE THR SEQRES 67 A 1053 ARG ASP SER TYR ASP SER GLY ASP TRP PHE ASN ARG VAL SEQRES 68 A 1053 ASP TYR SER LEU GLN ASP ASN ASN TYR ASN VAL GLY MET SEQRES 69 A 1053 PRO ARG SER SER ASP ASP GLY SER ASN TYR ASP ILE ILE SEQRES 70 A 1053 ALA ARG VAL LYS ASP ALA VAL ALA THR PRO GLY GLU THR SEQRES 71 A 1053 GLU LEU LYS GLN MET THR ALA PHE TYR GLN GLU LEU THR SEQRES 72 A 1053 ALA LEU ARG LYS SER SER PRO LEU PHE THR LEU GLY ASP SEQRES 73 A 1053 GLY ALA THR VAL MET LYS ARG VAL ASP PHE ARG ASN THR SEQRES 74 A 1053 GLY ALA ASP GLN GLN THR GLY LEU LEU VAL MET THR ILE SEQRES 75 A 1053 ASP ASP GLY MET GLN ALA GLY ALA SER LEU ASP SER ARG SEQRES 76 A 1053 VAL ASP GLY ILE VAL VAL ALA ILE ASN ALA ALA PRO GLU SEQRES 77 A 1053 SER ARG THR LEU GLN ASP PHE ALA GLY THR SER LEU GLN SEQRES 78 A 1053 LEU SER ALA ILE GLN GLN ALA ALA GLY ASP ARG SER LEU SEQRES 79 A 1053 ALA SER GLY VAL GLN VAL ALA ALA ASP GLY SER VAL THR SEQRES 80 A 1053 LEU PRO ALA TRP SER VAL ALA VAL LEU GLU LEU PRO GLN SEQRES 81 A 1053 GLY GLU SER GLN GLY ALA GLY LEU PRO VAL SER SER LYS HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET CA A1107 1 HET CA A1108 1 HET GOL A1109 6 HET GOL A1110 6 HET GOL A1111 12 HET MG A1112 1 HET MG A1113 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 6(C6 H12 O6) FORMUL 4 CA 2(CA 2+) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 MG 2(MG 2+) FORMUL 11 HOH *801(H2 O) HELIX 1 AA1 PRO A 190 GLU A 193 5 4 HELIX 2 AA2 SER A 229 PHE A 236 1 8 HELIX 3 AA3 PRO A 237 ALA A 240 5 4 HELIX 4 AA4 ASN A 252 LEU A 257 1 6 HELIX 5 AA5 THR A 280 ALA A 294 1 15 HELIX 6 AA6 GLY A 349 LYS A 353 5 5 HELIX 7 AA7 SER A 385 GLU A 389 5 5 HELIX 8 AA8 ASP A 398 LYS A 402 5 5 HELIX 9 AA9 GLY A 405 LEU A 409 5 5 HELIX 10 AB1 THR A 417 LYS A 423 1 7 HELIX 11 AB2 HIS A 430 ALA A 436 1 7 HELIX 12 AB3 PRO A 442 ARG A 446 5 5 HELIX 13 AB4 LYS A 448 ALA A 454 5 7 HELIX 14 AB5 SER A 457 SER A 469 1 13 HELIX 15 AB6 PHE A 488 VAL A 492 5 5 HELIX 16 AB7 PRO A 498 ASN A 506 1 9 HELIX 17 AB8 ASN A 506 SER A 511 1 6 HELIX 18 AB9 PHE A 514 CYS A 518 5 5 HELIX 19 AC1 THR A 523 LYS A 532 1 10 HELIX 20 AC2 PRO A 540 ALA A 550 1 11 HELIX 21 AC3 THR A 578 ASP A 594 1 17 HELIX 22 AC4 VAL A 619 VAL A 624 1 6 HELIX 23 AC5 HIS A 651 LYS A 670 1 20 HELIX 24 AC6 LEU A 678 HIS A 682 5 5 HELIX 25 AC7 PRO A 683 ALA A 696 1 14 HELIX 26 AC8 SER A 733 GLY A 742 1 10 HELIX 27 AC9 ASP A 750 ASN A 755 1 6 HELIX 28 AD1 GLY A 757 GLY A 761 5 5 HELIX 29 AD2 SER A 773 ALA A 789 1 17 HELIX 30 AD3 ASP A 822 THR A 824 5 3 HELIX 31 AD4 THR A 837 ALA A 846 1 10 HELIX 32 AD5 ASP A 851 LEU A 868 1 18 HELIX 33 AD6 GLY A 878 LEU A 882 5 5 HELIX 34 AD7 SER A 894 ARG A 900 1 7 HELIX 35 AD8 ARG A 916 GLY A 921 1 6 HELIX 36 AD9 ASN A 923 LYS A 931 1 9 HELIX 37 AE1 GLY A 938 SER A 959 1 22 HELIX 38 AE2 PRO A 960 THR A 963 5 4 HELIX 39 AE3 ASP A 966 ARG A 973 1 8 HELIX 40 AE4 SER A 1033 GLY A 1040 1 8 HELIX 41 AE5 ASP A 1041 SER A 1043 5 3 SHEET 1 AA1 8 ALA A 179 ASP A 183 0 SHEET 2 AA1 8 THR A 186 LEU A 188 -1 O LEU A 188 N HIS A 180 SHEET 3 AA1 8 ALA A 244 LYS A 246 -1 O PHE A 245 N LEU A 187 SHEET 4 AA1 8 TYR A 220 THR A 226 -1 N THR A 224 O LYS A 246 SHEET 5 AA1 8 ILE A 197 SER A 203 -1 N LEU A 200 O VAL A 221 SHEET 6 AA1 8 GLU A 260 ALA A 266 -1 O ILE A 264 N ARG A 199 SHEET 7 AA1 8 LEU A 272 GLN A 279 -1 O SER A 273 N ALA A 265 SHEET 8 AA1 8 ALA A 179 ASP A 183 1 N ALA A 179 O GLN A 279 SHEET 1 AA2 4 GLY A 298 LEU A 301 0 SHEET 2 AA2 4 VAL A 306 TRP A 311 -1 O THR A 307 N GLN A 300 SHEET 3 AA2 4 ALA A 343 GLY A 348 -1 O TRP A 346 N PHE A 308 SHEET 4 AA2 4 THR A 336 ARG A 337 -1 N THR A 336 O SER A 345 SHEET 1 AA3 4 VAL A 329 PRO A 334 0 SHEET 2 AA3 4 GLN A 317 TYR A 323 -1 N LEU A 320 O HIS A 333 SHEET 3 AA3 4 PHE A 356 HIS A 365 -1 O ALA A 360 N GLU A 319 SHEET 4 AA3 4 LYS A 370 VAL A 376 -1 O TYR A 374 N MET A 361 SHEET 1 AA4 4 VAL A 329 PRO A 334 0 SHEET 2 AA4 4 GLN A 317 TYR A 323 -1 N LEU A 320 O HIS A 333 SHEET 3 AA4 4 PHE A 356 HIS A 365 -1 O ALA A 360 N GLU A 319 SHEET 4 AA4 4 SER A 391 GLN A 392 -1 O SER A 391 N TYR A 357 SHEET 1 AA5 9 THR A 425 SER A 429 0 SHEET 2 AA5 9 HIS A 473 LEU A 476 1 O GLU A 475 N SER A 429 SHEET 3 AA5 9 ASN A 598 VAL A 603 1 O ILE A 600 N LEU A 476 SHEET 4 AA5 9 GLY A 673 PHE A 676 1 O ARG A 675 N VAL A 603 SHEET 5 AA5 9 TYR A 702 GLY A 705 1 O PHE A 704 N PHE A 676 SHEET 6 AA5 9 GLY A 730 PHE A 732 1 O GLY A 730 N PHE A 703 SHEET 7 AA5 9 VAL A 826 ASN A 828 1 O VAL A 827 N THR A 731 SHEET 8 AA5 9 ILE A 872 GLN A 876 1 O ILE A 872 N ASN A 828 SHEET 9 AA5 9 THR A 425 SER A 429 1 N GLU A 428 O ASP A 875 SHEET 1 AA6 2 PHE A 480 LEU A 482 0 SHEET 2 AA6 2 PRO A 561 PRO A 567 -1 O PHE A 562 N ASP A 481 SHEET 1 AA7 2 HIS A 607 THR A 608 0 SHEET 2 AA7 2 SER A 645 ASP A 646 -1 O SER A 645 N THR A 608 SHEET 1 AA8 2 VAL A 796 ILE A 798 0 SHEET 2 AA8 2 VAL A 804 ARG A 806 -1 O LYS A 805 N LEU A 797 SHEET 1 AA9 2 ASP A 811 TYR A 812 0 SHEET 2 AA9 2 ALA A 815 PRO A 816 -1 O ALA A 815 N TYR A 812 SHEET 1 AB1 5 VAL A 974 ARG A 977 0 SHEET 2 AB1 5 LEU A 987 ASP A 993 -1 O THR A 991 N ASP A 975 SHEET 3 AB1 5 VAL A1006 ASN A1014 -1 O VAL A1011 N MET A 990 SHEET 4 AB1 5 SER A1062 PRO A1069 -1 O ALA A1064 N ALA A1012 SHEET 5 AB1 5 GLN A1031 LEU A1032 -1 N GLN A1031 O GLU A1067 SHEET 1 AB2 3 ARG A1020 LEU A1022 0 SHEET 2 AB2 3 VAL A1056 LEU A1058 -1 O VAL A1056 N LEU A1022 SHEET 3 AB2 3 GLN A1049 VAL A1050 -1 N GLN A1049 O THR A1057 SSBOND 1 CYS A 503 CYS A 518 1555 1555 2.03 SSBOND 2 CYS A 643 CYS A 644 1555 1555 2.05 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.44 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.44 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.44 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.44 LINK OD1 ASP A 481 MG MG A1113 1555 1555 2.11 LINK O LEU A 482 MG MG A1113 1555 1555 2.24 LINK OE2 GLU A 487 MG MG A1113 1555 1555 2.18 LINK O ALA A 550 CA CA A1108 1555 1555 2.47 LINK OD1 ASP A 553 CA CA A1108 1555 1555 2.43 LINK O TYR A 555 CA CA A1108 1555 1555 2.35 LINK OE2 GLU A 568 MG MG A1113 1555 1555 2.25 LINK OD1 ASP A 893 CA CA A1108 1555 1555 2.33 LINK OD2 ASP A 994 MG MG A1112 1555 1555 2.07 LINK OG SER A1001 MG MG A1112 1555 1555 2.22 LINK O ASP A1003 MG MG A1112 1555 1555 1.99 LINK O VAL A1006 MG MG A1112 1555 1555 2.13 LINK OE1 GLN A1070 MG MG A1112 1555 1555 2.08 LINK CA CA A1107 O HOH A1204 1555 1555 2.19 LINK CA CA A1107 O HOH A1213 1555 1555 2.28 LINK CA CA A1107 O HOH A1224 1555 1555 2.26 LINK CA CA A1107 O HOH A1228 1555 1555 2.22 LINK CA CA A1107 O HOH A1919 1555 1555 2.26 LINK CA CA A1107 O HOH A1959 1555 1555 2.30 LINK CA CA A1108 O HOH A1440 1555 1555 2.43 LINK CA CA A1108 O HOH A1443 1555 1555 2.49 LINK CA CA A1108 O HOH A1673 1555 1555 2.42 LINK MG MG A1112 O HOH A1297 1555 1555 2.06 LINK MG MG A1113 O HOH A1280 1555 1555 2.22 LINK MG MG A1113 O HOH A1554 1555 1555 2.26 CRYST1 148.943 60.103 133.962 90.00 114.66 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006714 0.000000 0.003082 0.00000 SCALE2 0.000000 0.016638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008214 0.00000