HEADER IMMUNE SYSTEM 09-JAN-19 6J4I TITLE A CONSERVED AND BURIED EDGE-TO-FACE AROMATIC INTERACTION IN SUMO IS TITLE 2 VITAL FOR THE SUMO PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POST-TRANSLATIONAL MODIFIER, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.S.CHATTERJEE,R.DAS REVDAT 4 14-JUN-23 6J4I 1 REMARK REVDAT 3 15-MAY-19 6J4I 1 JRNL REMARK REVDAT 2 20-MAR-19 6J4I 1 JRNL REVDAT 1 13-MAR-19 6J4I 0 JRNL AUTH K.S.CHATTERJEE,V.TRIPATHI,R.DAS JRNL TITL A CONSERVED AND BURIED EDGE-TO-FACE AROMATIC INTERACTION IN JRNL TITL 2 SMALL UBIQUITIN-LIKE MODIFIER (SUMO) HAS A ROLE IN SUMO JRNL TITL 3 STABILITY AND FUNCTION. JRNL REF J.BIOL.CHEM. V. 294 6772 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30824543 JRNL DOI 10.1074/JBC.RA118.006642 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010403. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 172 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-98% 15N] SMALL REMARK 210 UBIQUITIN LIKE MODIFIER, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PINE, NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 -140.27 -96.32 REMARK 500 1 LEU A 13 12.64 -144.80 REMARK 500 1 GLU A 20 56.62 -110.45 REMARK 500 1 ASN A 60 31.07 -90.38 REMARK 500 1 GLU A 67 18.74 54.90 REMARK 500 1 ALA A 72 -155.39 -95.83 REMARK 500 1 ASP A 86 19.68 55.42 REMARK 500 2 LYS A 17 -160.20 62.93 REMARK 500 2 ASN A 60 44.04 -89.46 REMARK 500 2 ASP A 86 18.70 52.37 REMARK 500 3 GLU A 5 -75.85 -134.05 REMARK 500 3 THR A 41 38.83 -91.68 REMARK 500 3 GLU A 84 -51.58 70.64 REMARK 500 3 ASP A 86 15.18 -61.42 REMARK 500 4 GLU A 5 -73.06 -107.23 REMARK 500 4 GLU A 84 -50.04 70.59 REMARK 500 4 ASP A 86 16.04 -61.86 REMARK 500 4 GLU A 93 54.10 -118.41 REMARK 500 5 ASP A 3 -66.82 -146.93 REMARK 500 5 LYS A 17 -99.74 61.07 REMARK 500 5 THR A 41 57.90 -98.83 REMARK 500 5 GLU A 84 -55.00 64.09 REMARK 500 5 ASP A 86 18.47 51.14 REMARK 500 6 GLN A 4 40.58 -104.42 REMARK 500 6 LYS A 17 -150.35 61.88 REMARK 500 6 MET A 59 33.04 -81.15 REMARK 500 6 ALA A 72 -144.78 -109.53 REMARK 500 6 ASN A 74 27.50 -75.44 REMARK 500 6 GLU A 84 -54.31 63.83 REMARK 500 6 ASP A 86 19.65 51.35 REMARK 500 6 GLN A 94 -102.54 57.30 REMARK 500 7 GLU A 5 -92.10 62.51 REMARK 500 7 GLU A 67 27.64 49.85 REMARK 500 7 GLU A 84 -51.82 -29.53 REMARK 500 7 ASP A 86 19.19 53.54 REMARK 500 7 GLU A 93 60.00 -100.26 REMARK 500 8 SER A 2 -86.95 -145.91 REMARK 500 8 GLU A 5 -60.47 -143.70 REMARK 500 8 LYS A 23 102.70 63.76 REMARK 500 8 MET A 59 37.88 -83.05 REMARK 500 8 GLU A 84 -51.77 71.23 REMARK 500 8 ASP A 86 15.19 -64.76 REMARK 500 8 GLU A 93 78.71 -107.08 REMARK 500 9 THR A 41 56.88 -118.18 REMARK 500 9 GLU A 67 25.31 49.84 REMARK 500 9 GLU A 84 -51.38 69.95 REMARK 500 9 ASP A 86 17.39 -63.21 REMARK 500 9 GLN A 94 94.37 66.27 REMARK 500 10 GLN A 4 62.08 -111.15 REMARK 500 10 GLU A 20 -49.77 -164.41 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27573 RELATED DB: BMRB DBREF 6J4I A 1 97 UNP P63165 SUMO1_HUMAN 1 97 SEQADV 6J4I ARG A -10 UNP P63165 EXPRESSION TAG SEQADV 6J4I GLY A -9 UNP P63165 EXPRESSION TAG SEQADV 6J4I SER A -8 UNP P63165 EXPRESSION TAG SEQADV 6J4I HIS A -7 UNP P63165 EXPRESSION TAG SEQADV 6J4I HIS A -6 UNP P63165 EXPRESSION TAG SEQADV 6J4I HIS A -5 UNP P63165 EXPRESSION TAG SEQADV 6J4I HIS A -4 UNP P63165 EXPRESSION TAG SEQADV 6J4I HIS A -3 UNP P63165 EXPRESSION TAG SEQADV 6J4I HIS A -2 UNP P63165 EXPRESSION TAG SEQADV 6J4I GLY A -1 UNP P63165 EXPRESSION TAG SEQADV 6J4I SER A 0 UNP P63165 EXPRESSION TAG SEQADV 6J4I LEU A 64 UNP P63165 PHE 64 ENGINEERED MUTATION SEQRES 1 A 108 ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SER SEQRES 2 A 108 ASP GLN GLU ALA LYS PRO SER THR GLU ASP LEU GLY ASP SEQRES 3 A 108 LYS LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE GLY SEQRES 4 A 108 GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET THR SEQRES 5 A 108 THR HIS LEU LYS LYS LEU LYS GLU SER TYR CYS GLN ARG SEQRES 6 A 108 GLN GLY VAL PRO MET ASN SER LEU ARG LEU LEU PHE GLU SEQRES 7 A 108 GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU LEU SEQRES 8 A 108 GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN GLU SEQRES 9 A 108 GLN THR GLY GLY HELIX 1 AA1 HIS A 43 GLY A 56 1 14 HELIX 2 AA2 THR A 76 GLY A 81 1 6 SHEET 1 AA1 5 SER A 32 VAL A 38 0 SHEET 2 AA1 5 ILE A 22 GLY A 28 -1 N LEU A 24 O PHE A 36 SHEET 3 AA1 5 ILE A 88 GLN A 92 1 O ILE A 88 N ILE A 27 SHEET 4 AA1 5 LEU A 62 PHE A 66 -1 N ARG A 63 O TYR A 91 SHEET 5 AA1 5 GLN A 69 ARG A 70 -1 O GLN A 69 N PHE A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1