HEADER HYDROLASE 10-JAN-19 6J4O TITLE STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY VASOHIBINS-SVBP ENZYME TITLE 2 COMPLEX AND FUNCTIONAL IMPLICATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VASOHIBIN-2,VASOHIBIN-LIKE PROTEIN; COMPND 5 EC: 3.4.17.17; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH2, VASHL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: RSFDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SVBP, CCDC23; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: RSFDUET KEYWDS CARBOXYPEPTIDASE, TUBULIN, MICROTUBULE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WANG,H.HUANG REVDAT 2 13-NOV-19 6J4O 1 JRNL REVDAT 1 01-MAY-19 6J4O 0 JRNL AUTH N.WANG,C.BOSC,S.RYUL CHOI,B.BOULAN,L.PERIS,N.OLIERIC,H.BAO, JRNL AUTH 2 F.KRICHEN,L.CHEN,A.ANDRIEUX,V.OLIERIC,M.J.MOUTIN, JRNL AUTH 3 M.O.STEINMETZ,H.HUANG JRNL TITL STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY THE JRNL TITL 2 VASOHIBIN-SVBP ENZYME COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 571 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31235911 JRNL DOI 10.1038/S41594-019-0241-Y REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 21587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3203 - 5.4057 0.98 1655 152 0.2043 0.2094 REMARK 3 2 5.4057 - 4.2916 1.00 1604 146 0.1468 0.1852 REMARK 3 3 4.2916 - 3.7493 1.00 1580 144 0.1426 0.1661 REMARK 3 4 3.7493 - 3.4066 1.00 1588 145 0.1600 0.1986 REMARK 3 5 3.4066 - 3.1625 0.99 1570 143 0.1749 0.2455 REMARK 3 6 3.1625 - 2.9761 1.00 1567 143 0.1953 0.2439 REMARK 3 7 2.9761 - 2.8271 1.00 1574 144 0.1957 0.2458 REMARK 3 8 2.8271 - 2.7040 0.99 1562 142 0.2070 0.2766 REMARK 3 9 2.7040 - 2.5999 0.98 1531 140 0.2119 0.2943 REMARK 3 10 2.5999 - 2.5102 0.97 1520 135 0.2193 0.2590 REMARK 3 11 2.5102 - 2.4317 0.91 1437 126 0.2326 0.2387 REMARK 3 12 2.4317 - 2.3622 0.88 1373 123 0.2373 0.2998 REMARK 3 13 2.3622 - 2.3000 0.79 1231 112 0.2574 0.3123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2400 REMARK 3 ANGLE : 1.047 3227 REMARK 3 CHIRALITY : 0.051 338 REMARK 3 PLANARITY : 0.006 405 REMARK 3 DIHEDRAL : 11.435 1444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2815 28.0885 90.1731 REMARK 3 T TENSOR REMARK 3 T11: 0.2896 T22: 0.5103 REMARK 3 T33: 0.3054 T12: -0.0417 REMARK 3 T13: 0.0679 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 4.3142 L22: 3.9456 REMARK 3 L33: 1.7001 L12: -3.6198 REMARK 3 L13: 1.5909 L23: -0.3134 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0342 S13: -0.2117 REMARK 3 S21: -0.0108 S22: -0.1812 S23: 0.1630 REMARK 3 S31: 0.2434 S32: -0.2860 S33: 0.2391 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8318 29.0196 91.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.6532 REMARK 3 T33: 0.2970 T12: -0.0185 REMARK 3 T13: 0.0036 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.9949 L22: 3.7797 REMARK 3 L33: 2.7088 L12: 3.0305 REMARK 3 L13: -1.2769 L23: -0.6163 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.6873 S13: -0.2634 REMARK 3 S21: -0.0896 S22: -0.0368 S23: -0.8486 REMARK 3 S31: 0.3631 S32: 0.3078 S33: 0.0325 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3177 31.6535 61.1911 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.2300 REMARK 3 T33: 0.1661 T12: -0.0327 REMARK 3 T13: 0.0377 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.3005 L22: 0.5394 REMARK 3 L33: 8.5046 L12: -0.7161 REMARK 3 L13: 3.4956 L23: 0.7206 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.1028 S13: -0.2659 REMARK 3 S21: -0.1412 S22: -0.0099 S23: -0.0161 REMARK 3 S31: -0.3219 S32: 0.0930 S33: -0.0657 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4309 26.6069 77.6449 REMARK 3 T TENSOR REMARK 3 T11: 0.2236 T22: 0.2797 REMARK 3 T33: 0.2568 T12: -0.0932 REMARK 3 T13: 0.0337 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.4442 L22: 3.4895 REMARK 3 L33: 6.0688 L12: -2.2510 REMARK 3 L13: 3.2442 L23: -1.1398 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.3713 S13: -0.3070 REMARK 3 S21: 0.0121 S22: 0.1005 S23: 0.5720 REMARK 3 S31: 0.1864 S32: -0.6150 S33: -0.0850 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8251 35.9064 71.5540 REMARK 3 T TENSOR REMARK 3 T11: 0.3739 T22: 0.3084 REMARK 3 T33: 0.4198 T12: 0.0082 REMARK 3 T13: 0.0500 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.1747 L22: 2.3945 REMARK 3 L33: 6.2931 L12: 2.5816 REMARK 3 L13: 4.8935 L23: 2.7287 REMARK 3 S TENSOR REMARK 3 S11: 0.3840 S12: 0.2942 S13: -0.0285 REMARK 3 S21: 0.3101 S22: -0.3631 S23: 0.2289 REMARK 3 S31: 0.3708 S32: -0.1926 S33: 0.0351 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2849 20.9273 67.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.0980 REMARK 3 T33: 0.1740 T12: -0.0309 REMARK 3 T13: -0.0111 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.7010 L22: 0.8971 REMARK 3 L33: 1.4224 L12: 0.4371 REMARK 3 L13: 0.6780 L23: 1.1127 REMARK 3 S TENSOR REMARK 3 S11: 0.1601 S12: -0.1389 S13: -0.2108 REMARK 3 S21: 0.1601 S22: -0.0939 S23: 0.0319 REMARK 3 S31: 0.2300 S32: -0.1230 S33: -0.0491 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1302 13.1617 62.0735 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.1693 REMARK 3 T33: 0.2769 T12: 0.0272 REMARK 3 T13: 0.0231 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.3338 L22: 5.7725 REMARK 3 L33: 4.3063 L12: 0.3711 REMARK 3 L13: 1.0468 L23: -2.2870 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: -0.0845 S13: -0.2711 REMARK 3 S21: -0.0824 S22: 0.0361 S23: -0.2269 REMARK 3 S31: 0.4578 S32: 0.3767 S33: -0.1709 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5673 16.4700 64.3635 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.2028 REMARK 3 T33: 0.2951 T12: -0.0356 REMARK 3 T13: -0.0152 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.6705 L22: 4.2855 REMARK 3 L33: 2.2281 L12: -0.0606 REMARK 3 L13: 0.0997 L23: -0.6786 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.0418 S13: -0.1445 REMARK 3 S21: -0.0312 S22: 0.0344 S23: 0.4875 REMARK 3 S31: 0.1817 S32: -0.3481 S33: -0.0351 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7915 10.3535 53.1687 REMARK 3 T TENSOR REMARK 3 T11: 0.4153 T22: 0.4076 REMARK 3 T33: 0.4065 T12: -0.0494 REMARK 3 T13: -0.1099 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 6.1142 L22: 5.8519 REMARK 3 L33: 7.3511 L12: -1.7505 REMARK 3 L13: 0.1356 L23: -1.2190 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.6677 S13: -0.0603 REMARK 3 S21: -1.1767 S22: -0.1316 S23: 1.0466 REMARK 3 S31: -0.0468 S32: -0.6261 S33: -0.0417 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4360 26.8703 83.8956 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.3621 REMARK 3 T33: 0.1434 T12: -0.0682 REMARK 3 T13: 0.0066 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 7.0421 L22: 8.0728 REMARK 3 L33: 6.0346 L12: -2.5564 REMARK 3 L13: 0.4341 L23: 0.9489 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.3014 S13: -0.3016 REMARK 3 S21: 0.4193 S22: -0.0841 S23: -0.0406 REMARK 3 S31: 0.1426 S32: 0.6251 S33: 0.0818 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM/POTASSIUM PHOSPHATE, PH REMARK 280 8.2, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.62400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.58550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.62400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 97.58550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.62400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 97.58550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.62400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.58550 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 97.58550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 97.58550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.58550 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 97.58550 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.62400 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.62400 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 61.62400 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 41.57000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 61.62400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 520 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 46 REMARK 465 VAL A 47 REMARK 465 LEU A 48 REMARK 465 LEU A 295 REMARK 465 LYS A 296 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 60 REMARK 465 MSE B 61 REMARK 465 GLN B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 533 O HOH A 547 2.17 REMARK 500 O HOH A 583 O HOH A 602 2.17 REMARK 500 O HOH A 518 O HOH A 604 2.18 REMARK 500 O HOH A 517 O HOH A 542 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 76 44.61 -99.59 REMARK 500 GLN A 122 149.40 85.68 REMARK 500 SER A 153 70.80 59.42 REMARK 500 LYS A 157 -166.76 -110.70 REMARK 500 SER A 187 64.29 30.33 REMARK 500 MSE A 216 -99.45 -144.38 REMARK 500 LYS A 265 54.68 -141.79 REMARK 500 LYS B 25 35.05 -72.92 REMARK 500 SER B 26 -50.58 -137.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 614 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 118 DISTANCE = 7.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 308 DBREF 6J4O A 46 296 UNP Q86V25 VASH2_HUMAN 46 296 DBREF 6J4O B 1 66 UNP Q8N300 SVBP_HUMAN 1 66 SEQRES 1 A 251 GLY VAL LEU PHE HIS VAL ASN LYS SER GLY PHE PRO ILE SEQRES 2 A 251 ASP SER HIS THR TRP GLU ARG MSE TRP MSE HIS VAL ALA SEQRES 3 A 251 LYS VAL HIS PRO LYS GLY GLY GLU MSE VAL GLY ALA ILE SEQRES 4 A 251 ARG ASN ALA ALA PHE LEU ALA LYS PRO SER ILE PRO GLN SEQRES 5 A 251 VAL PRO ASN TYR ARG LEU SER MSE THR ILE PRO ASP TRP SEQRES 6 A 251 LEU GLN ALA ILE GLN ASN TYR MSE LYS THR LEU GLN TYR SEQRES 7 A 251 ASN HIS THR GLY THR GLN PHE PHE GLU ILE ARG LYS MSE SEQRES 8 A 251 ARG PRO LEU SER GLY LEU MSE GLU THR ALA LYS GLU MSE SEQRES 9 A 251 THR ARG GLU SER LEU PRO ILE LYS CYS LEU GLU ALA VAL SEQRES 10 A 251 ILE LEU GLY ILE TYR LEU THR ASN GLY GLN PRO SER ILE SEQRES 11 A 251 GLU ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER GLY SEQRES 12 A 251 ASN TYR PHE HIS HIS VAL VAL LEU GLY ILE TYR CYS ASN SEQRES 13 A 251 GLY ARG TYR GLY SER LEU GLY MSE SER ARG ARG ALA GLU SEQRES 14 A 251 LEU MSE ASP LYS PRO LEU THR PHE ARG THR LEU SER ASP SEQRES 15 A 251 LEU ILE PHE ASP PHE GLU ASP SER TYR LYS LYS TYR LEU SEQRES 16 A 251 HIS THR VAL LYS LYS VAL LYS ILE GLY LEU TYR VAL PRO SEQRES 17 A 251 HIS GLU PRO HIS SER PHE GLN PRO ILE GLU TRP LYS GLN SEQRES 18 A 251 LEU VAL LEU ASN VAL SER LYS MSE LEU ARG ALA ASP ILE SEQRES 19 A 251 ARG LYS GLU LEU GLU LYS TYR ALA ARG ASP MSE ARG MSE SEQRES 20 A 251 LYS ILE LEU LYS SEQRES 1 B 66 MSE ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 B 66 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 B 66 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 B 66 TYR ALA LEU ASN ARG VAL MSE THR GLU LEU GLU GLN GLN SEQRES 5 B 66 GLN PHE ASP GLU PHE CYS LYS GLN MSE GLN PRO PRO GLY SEQRES 6 B 66 GLU MODRES 6J4O MSE A 66 MET MODIFIED RESIDUE MODRES 6J4O MSE A 68 MET MODIFIED RESIDUE MODRES 6J4O MSE A 80 MET MODIFIED RESIDUE MODRES 6J4O MSE A 105 MET MODIFIED RESIDUE MODRES 6J4O MSE A 118 MET MODIFIED RESIDUE MODRES 6J4O MSE A 136 MET MODIFIED RESIDUE MODRES 6J4O MSE A 143 MET MODIFIED RESIDUE MODRES 6J4O MSE A 149 MET MODIFIED RESIDUE MODRES 6J4O MSE A 209 MET MODIFIED RESIDUE MODRES 6J4O MSE A 216 MET MODIFIED RESIDUE MODRES 6J4O MSE A 274 MET MODIFIED RESIDUE MODRES 6J4O MSE A 290 MET MODIFIED RESIDUE MODRES 6J4O MSE A 292 MET MODIFIED RESIDUE MODRES 6J4O MSE B 46 MET MODIFIED RESIDUE HET MSE A 66 8 HET MSE A 68 8 HET MSE A 80 8 HET MSE A 105 8 HET MSE A 118 8 HET MSE A 136 8 HET MSE A 143 8 HET MSE A 149 8 HET MSE A 209 8 HET MSE A 216 8 HET MSE A 274 8 HET MSE A 290 8 HET MSE A 292 8 HET MSE B 46 8 HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET PO4 A 306 5 HET PO4 A 307 5 HET PO4 A 308 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 PO4 3(O4 P 3-) FORMUL 11 HOH *232(H2 O) HELIX 1 AA1 ASP A 59 HIS A 74 1 16 HELIX 2 AA2 LYS A 76 ARG A 85 1 10 HELIX 3 AA3 THR A 106 GLN A 122 1 17 HELIX 4 AA4 PRO A 138 SER A 153 1 16 HELIX 5 AA5 LYS A 157 ASN A 170 1 14 HELIX 6 AA6 THR A 224 TYR A 239 1 16 HELIX 7 AA7 ASN A 270 MSE A 274 5 5 HELIX 8 AA8 LEU A 275 LYS A 293 1 19 HELIX 9 AA9 SER B 26 LYS B 59 1 34 SHEET 1 AA1 2 HIS A 50 VAL A 51 0 SHEET 2 AA1 2 THR A 128 GLN A 129 1 O GLN A 129 N HIS A 50 SHEET 1 AA2 6 LYS A 218 PHE A 222 0 SHEET 2 AA2 6 ARG A 203 LEU A 207 -1 N TYR A 204 O PHE A 222 SHEET 3 AA2 6 ASN A 189 CYS A 200 -1 N CYS A 200 O ARG A 203 SHEET 4 AA2 6 GLU A 176 PHE A 186 -1 N PHE A 182 O HIS A 193 SHEET 5 AA2 6 THR A 242 ILE A 248 -1 O LYS A 244 N LYS A 183 SHEET 6 AA2 6 LEU A 267 LEU A 269 -1 O LEU A 269 N VAL A 246 LINK C ARG A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N TRP A 67 1555 1555 1.33 LINK C TRP A 67 N MSE A 68 1555 1555 1.32 LINK C MSE A 68 N HIS A 69 1555 1555 1.34 LINK C GLU A 79 N MSE A 80 1555 1555 1.32 LINK C MSE A 80 N VAL A 81 1555 1555 1.34 LINK C SER A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N THR A 106 1555 1555 1.33 LINK C TYR A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N LYS A 119 1555 1555 1.34 LINK C LYS A 135 N MSE A 136 1555 1555 1.34 LINK C MSE A 136 N ARG A 137 1555 1555 1.33 LINK C LEU A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N GLU A 144 1555 1555 1.34 LINK C GLU A 148 N MSE A 149 1555 1555 1.34 LINK C MSE A 149 N THR A 150 1555 1555 1.34 LINK C GLY A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N SER A 210 1555 1555 1.33 LINK C LEU A 215 N MSE A 216 1555 1555 1.31 LINK C MSE A 216 N ASP A 217 1555 1555 1.31 LINK C LYS A 273 N MSE A 274 1555 1555 1.31 LINK C MSE A 274 N LEU A 275 1555 1555 1.32 LINK C ASP A 289 N MSE A 290 1555 1555 1.34 LINK C MSE A 290 N ARG A 291 1555 1555 1.34 LINK C ARG A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N LYS A 293 1555 1555 1.34 LINK C VAL B 45 N MSE B 46 1555 1555 1.32 LINK C MSE B 46 N THR B 47 1555 1555 1.31 CISPEP 1 PHE A 56 PRO A 57 0 2.51 SITE 1 AC1 7 LEU A 111 GLN A 112 GLN A 115 SER A 206 SITE 2 AC1 7 ASP A 217 LYS A 218 HOH A 523 SITE 1 AC2 7 ASN A 52 GLY A 55 PHE A 130 PHE A 131 SITE 2 AC2 7 GLU A 132 THR A 145 GLU A 148 SITE 1 AC3 5 HIS A 125 SER A 210 MSE A 216 HOH A 467 SITE 2 AC3 5 HOH A 470 SITE 1 AC4 6 TRP A 63 ARG A 85 ASN A 86 ARG B 34 SITE 2 AC4 6 GLU B 38 HOH B 108 SITE 1 AC5 3 ARG A 212 HIS A 241 HOH A 404 SITE 1 AC6 4 ARG A 102 SER A 104 HOH A 406 HOH A 512 SITE 1 AC7 4 PRO A 99 ASN A 100 TYR A 167 HOH A 528 SITE 1 AC8 4 LYS A 183 HIS A 192 LYS A 245 LYS A 247 CRYST1 83.140 123.248 195.171 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005124 0.00000