HEADER HYDROLASE 10-JAN-19 6J4U TITLE STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY VASOHIBINS-SVBP ENZYME TITLE 2 COMPLEX AND FUNCTIONAL IMPLICATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TUBULIN CARBOXYPEPTIDASE 1,TYROSINE CARBOXYPEPTIDASE 1,TTCP COMPND 5 1,VASOHIBIN-1; COMPND 6 EC: 3.4.17.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH1, KIAA1036, VASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: RSFDEUT; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SVBP, CCDC23; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: RSFDEUT KEYWDS CARBOXYPEPTIDASE, TUBULIN, MICROTUBULE., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WANG,H.BAO,H.HUANG REVDAT 3 22-NOV-23 6J4U 1 REMARK REVDAT 2 13-NOV-19 6J4U 1 JRNL REVDAT 1 01-MAY-19 6J4U 0 JRNL AUTH N.WANG,C.BOSC,S.RYUL CHOI,B.BOULAN,L.PERIS,N.OLIERIC,H.BAO, JRNL AUTH 2 F.KRICHEN,L.CHEN,A.ANDRIEUX,V.OLIERIC,M.J.MOUTIN, JRNL AUTH 3 M.O.STEINMETZ,H.HUANG JRNL TITL STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY THE JRNL TITL 2 VASOHIBIN-SVBP ENZYME COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 571 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31235911 JRNL DOI 10.1038/S41594-019-0241-Y REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7087 - 4.3030 0.99 2880 155 0.1567 0.1858 REMARK 3 2 4.3030 - 3.4157 1.00 2750 134 0.1421 0.1753 REMARK 3 3 3.4157 - 2.9840 1.00 2707 153 0.1667 0.2106 REMARK 3 4 2.9840 - 2.7112 1.00 2703 154 0.1753 0.2294 REMARK 3 5 2.7112 - 2.5169 1.00 2678 151 0.1802 0.1974 REMARK 3 6 2.5169 - 2.3685 1.00 2644 176 0.1854 0.2277 REMARK 3 7 2.3685 - 2.2499 1.00 2682 131 0.1910 0.2234 REMARK 3 8 2.2499 - 2.1520 1.00 2669 131 0.2015 0.2196 REMARK 3 9 2.1520 - 2.0691 1.00 2664 138 0.2259 0.2662 REMARK 3 10 2.0691 - 1.9977 0.98 2587 146 0.2782 0.3314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2305 REMARK 3 ANGLE : 0.869 3111 REMARK 3 CHIRALITY : 0.053 333 REMARK 3 PLANARITY : 0.005 402 REMARK 3 DIHEDRAL : 12.627 1921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0670 65.4804 34.1161 REMARK 3 T TENSOR REMARK 3 T11: 0.4831 T22: 0.7668 REMARK 3 T33: 0.4032 T12: -0.0829 REMARK 3 T13: 0.0159 T23: 0.2010 REMARK 3 L TENSOR REMARK 3 L11: 7.7694 L22: 6.3468 REMARK 3 L33: 6.5238 L12: -0.4101 REMARK 3 L13: 1.2973 L23: -0.4012 REMARK 3 S TENSOR REMARK 3 S11: 0.2380 S12: -1.0622 S13: -0.3451 REMARK 3 S21: 0.9844 S22: -0.3630 S23: -0.3116 REMARK 3 S31: 0.2392 S32: 0.6854 S33: 0.0974 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2391 71.1492 15.3615 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.2407 REMARK 3 T33: 0.2457 T12: -0.0011 REMARK 3 T13: -0.0288 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.8634 L22: 1.2214 REMARK 3 L33: 5.6562 L12: 1.0368 REMARK 3 L13: -2.2686 L23: 0.5188 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.1953 S13: -0.1309 REMARK 3 S21: 0.0583 S22: 0.0470 S23: 0.0389 REMARK 3 S31: 0.1477 S32: -0.2668 S33: -0.0783 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.3012 82.9583 19.0752 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.2482 REMARK 3 T33: 0.2717 T12: 0.0190 REMARK 3 T13: 0.0072 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.6397 L22: 4.8596 REMARK 3 L33: 7.3438 L12: 0.5705 REMARK 3 L13: 1.3967 L23: 3.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: -0.2389 S13: 0.1812 REMARK 3 S21: 0.2237 S22: 0.0560 S23: -0.0296 REMARK 3 S31: -0.2187 S32: -0.1817 S33: -0.0341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.4395 81.2643 17.1714 REMARK 3 T TENSOR REMARK 3 T11: 0.3995 T22: 0.5998 REMARK 3 T33: 0.5384 T12: -0.0059 REMARK 3 T13: -0.0201 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 6.9304 L22: 2.3951 REMARK 3 L33: 6.0955 L12: 1.3072 REMARK 3 L13: 2.2327 L23: -0.3069 REMARK 3 S TENSOR REMARK 3 S11: -0.2915 S12: 0.1727 S13: 0.5443 REMARK 3 S21: -0.0708 S22: 0.1755 S23: -0.5737 REMARK 3 S31: -0.6019 S32: 0.9958 S33: 0.0278 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0882 67.4464 26.9361 REMARK 3 T TENSOR REMARK 3 T11: 0.3377 T22: 0.4460 REMARK 3 T33: 0.2980 T12: -0.0396 REMARK 3 T13: 0.0188 T23: 0.1237 REMARK 3 L TENSOR REMARK 3 L11: 7.2955 L22: 2.8772 REMARK 3 L33: 7.8664 L12: -0.3371 REMARK 3 L13: -0.1817 L23: 4.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: -0.3486 S13: -0.1739 REMARK 3 S21: -0.2233 S22: 0.0024 S23: -0.0535 REMARK 3 S31: -0.0299 S32: 0.2630 S33: 0.0881 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.998 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6J4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BY INTRODUCING THREE MUTATIONS REMARK 280 E71S/A72H/K79M INTO V1C ALLOWED US TO SOLVE THE V1C-SVBP TO HIGH REMARK 280 RESOLUTION. WELL DIFFRACTING CRYSTALS OF THE MUTANT V1C-SVBP REMARK 280 COMPLEX WERE OBTAINED IN 1.0 M LITHIUM CHLORIDE, 0.1 M CITRIC REMARK 280 ACID, PH 5.0, 20% PEG 6000., EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.72650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.05400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.72650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.05400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 593 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 57 REMARK 465 VAL A 58 REMARK 465 PRO A 59 REMARK 465 PHE A 60 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 53 REMARK 465 PHE B 54 REMARK 465 ASP B 55 REMARK 465 GLU B 56 REMARK 465 PHE B 57 REMARK 465 CYS B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 60 REMARK 465 MET B 61 REMARK 465 GLN B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 293 NH1 ARG A 296 1.71 REMARK 500 O HOH A 573 O HOH A 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 56.22 -107.53 REMARK 500 GLN A 133 143.69 83.69 REMARK 500 LYS A 168 -159.62 -114.84 REMARK 500 MET A 227 -93.76 -138.02 REMARK 500 GLU B 50 39.64 -78.63 REMARK 500 GLN B 51 -36.05 -141.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6J4U A 57 307 UNP Q7L8A9 VASH1_HUMAN 57 307 DBREF 6J4U B 1 66 UNP Q8N300 SVBP_HUMAN 1 66 SEQADV 6J4U SER A 71 UNP Q7L8A9 GLU 71 ENGINEERED MUTATION SEQADV 6J4U HIS A 72 UNP Q7L8A9 ALA 72 ENGINEERED MUTATION SEQADV 6J4U MET A 79 UNP Q7L8A9 LYS 79 ENGINEERED MUTATION SEQRES 1 A 251 GLY VAL PRO PHE PHE VAL ASN ARG GLY GLY LEU PRO VAL SEQRES 2 A 251 ASP SER HIS THR TRP GLU ARG MET TRP MET HIS VAL ALA SEQRES 3 A 251 LYS ILE HIS PRO ASP GLY GLU LYS VAL ALA GLN ARG ILE SEQRES 4 A 251 ARG GLY ALA THR ASP LEU PRO LYS ILE PRO ILE PRO SER SEQRES 5 A 251 VAL PRO THR PHE GLN PRO SER THR PRO VAL PRO GLU ARG SEQRES 6 A 251 LEU GLU ALA VAL GLN ARG TYR ILE ARG GLU LEU GLN TYR SEQRES 7 A 251 ASN HIS THR GLY THR GLN PHE PHE GLU ILE LYS LYS SER SEQRES 8 A 251 ARG PRO LEU THR GLY LEU MET ASP LEU ALA LYS GLU MET SEQRES 9 A 251 THR LYS GLU ALA LEU PRO ILE LYS CYS LEU GLU ALA VAL SEQRES 10 A 251 ILE LEU GLY ILE TYR LEU THR ASN SER MET PRO THR LEU SEQRES 11 A 251 GLU ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER GLY SEQRES 12 A 251 ASN TYR PHE ARG HIS ILE VAL LEU GLY VAL ASN PHE ALA SEQRES 13 A 251 GLY ARG TYR GLY ALA LEU GLY MET SER ARG ARG GLU ASP SEQRES 14 A 251 LEU MET TYR LYS PRO PRO ALA PHE ARG THR LEU SER GLU SEQRES 15 A 251 LEU VAL LEU ASP PHE GLU ALA ALA TYR GLY ARG CYS TRP SEQRES 16 A 251 HIS VAL LEU LYS LYS VAL LYS LEU GLY GLN SER VAL SER SEQRES 17 A 251 HIS ASP PRO HIS SER VAL GLU GLN ILE GLU TRP LYS HIS SEQRES 18 A 251 SER VAL LEU ASP VAL GLU ARG LEU GLY ARG ASP ASP PHE SEQRES 19 A 251 ARG LYS GLU LEU GLU ARG HIS ALA ARG ASP MET ARG LEU SEQRES 20 A 251 LYS ILE GLY LYS SEQRES 1 B 66 MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 B 66 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 B 66 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 B 66 TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN GLN SEQRES 5 B 66 GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO GLY SEQRES 6 B 66 GLU FORMUL 3 HOH *238(H2 O) HELIX 1 AA1 ASP A 70 HIS A 85 1 16 HELIX 2 AA2 ASP A 87 ARG A 96 1 10 HELIX 3 AA3 PRO A 117 GLN A 133 1 17 HELIX 4 AA4 PRO A 149 ALA A 164 1 16 HELIX 5 AA5 LYS A 168 ASN A 181 1 14 HELIX 6 AA6 ARG A 223 MET A 227 5 5 HELIX 7 AA7 THR A 235 CYS A 250 1 16 HELIX 8 AA8 VAL A 282 GLY A 286 1 5 HELIX 9 AA9 GLY A 286 LYS A 304 1 19 HELIX 10 AB1 LYS B 25 GLU B 50 1 26 SHEET 1 AA1 6 LYS A 229 PHE A 233 0 SHEET 2 AA1 6 ARG A 214 LEU A 218 -1 N TYR A 215 O PHE A 233 SHEET 3 AA1 6 ASN A 200 PHE A 211 -1 N LEU A 207 O LEU A 218 SHEET 4 AA1 6 LEU A 186 PHE A 197 -1 N PHE A 193 O HIS A 204 SHEET 5 AA1 6 VAL A 253 LEU A 259 -1 O LYS A 255 N LYS A 194 SHEET 6 AA1 6 SER A 278 ASP A 281 -1 O LEU A 280 N VAL A 257 CISPEP 1 LEU A 67 PRO A 68 0 0.42 CRYST1 44.512 71.453 128.108 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007806 0.00000