HEADER VIRAL PROTEIN 10-JAN-19 6J5C TITLE LOUPING ILL VIRUS ENVELOPE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOUPING ILL VIRUS; SOURCE 3 ORGANISM_COMMON: LI; SOURCE 4 ORGANISM_TAXID: 11086; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TICK-BORNE FLAVIVIRUS, ENVELOPE PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,J.QI,R.PENG,L.DAI,E.A.GOULD,P.TIEN,G.F.GAO REVDAT 4 22-NOV-23 6J5C 1 REMARK REVDAT 3 17-APR-19 6J5C 1 JRNL REVDAT 2 13-MAR-19 6J5C 1 JRNL REVDAT 1 06-FEB-19 6J5C 0 JRNL AUTH X.YANG,J.QI,R.PENG,L.DAI,E.A.GOULD,G.F.GAO,P.TIEN JRNL TITL MOLECULAR BASIS OF A PROTECTIVE/NEUTRALIZING MONOCLONAL JRNL TITL 2 ANTIBODY TARGETING ENVELOPE PROTEINS OF BOTH TICK-BORNE JRNL TITL 3 ENCEPHALITIS VIRUS AND LOUPING ILL VIRUS. JRNL REF J. VIROL. V. 93 2019 JRNL REFN ESSN 1098-5514 JRNL PMID 30760569 JRNL DOI 10.1128/JVI.02132-18 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 9070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2517 - 5.1826 1.00 3042 153 0.2631 0.2634 REMARK 3 2 5.1826 - 4.1142 1.00 2849 152 0.2275 0.2700 REMARK 3 3 4.1142 - 3.5943 0.97 2750 124 0.2921 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2944 REMARK 3 ANGLE : 0.923 3999 REMARK 3 CHIRALITY : 0.058 451 REMARK 3 PLANARITY : 0.007 508 REMARK 3 DIHEDRAL : 12.896 1079 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -67.7985 -12.8350 -7.6862 REMARK 3 T TENSOR REMARK 3 T11: 0.4147 T22: 0.2711 REMARK 3 T33: 0.2998 T12: -0.0496 REMARK 3 T13: 0.0795 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 0.8075 L22: 0.1491 REMARK 3 L33: 0.2046 L12: -0.2905 REMARK 3 L13: 0.2137 L23: -0.3670 REMARK 3 S TENSOR REMARK 3 S11: -0.1838 S12: 0.1300 S13: 0.0022 REMARK 3 S21: 0.0562 S22: 0.0782 S23: 0.0263 REMARK 3 S31: -0.0833 S32: 0.0285 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9191 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : 1.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SVB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID PH 3.5, 2.0M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 81.66700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.66700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.66700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.66700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 81.66700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 81.66700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 81.66700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 81.66700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 81.66700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 81.66700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 81.66700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 81.66700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 81.66700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 81.66700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 81.66700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 81.66700 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 122.50050 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 40.83350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.83350 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 122.50050 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 122.50050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 122.50050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 40.83350 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 40.83350 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 122.50050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 40.83350 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 122.50050 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 40.83350 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 122.50050 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 40.83350 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 40.83350 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 40.83350 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 122.50050 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 40.83350 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 122.50050 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 122.50050 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 122.50050 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 40.83350 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 40.83350 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 122.50050 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 122.50050 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 40.83350 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 40.83350 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 40.83350 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 40.83350 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 122.50050 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 40.83350 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 122.50050 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 40.83350 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 122.50050 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 122.50050 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 122.50050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -40.83350 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -40.83350 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 -40.83350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 ASP A 10 REMARK 465 PHE A 11 REMARK 465 VAL A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 148 REMARK 465 ASP A 149 REMARK 465 TYR A 150 REMARK 465 VAL A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 ASN A 154 REMARK 465 GLU A 155 REMARK 465 THR A 156 REMARK 465 HIS A 157 REMARK 465 LYS A 158 REMARK 465 GLY A 159 REMARK 465 ILE A 399 REMARK 465 GLY A 400 REMARK 465 ARG A 401 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 81 CG2 REMARK 470 ARG A 86 CD NE CZ NH1 NH2 REMARK 470 ILE A 88 CG1 CG2 CD1 REMARK 470 THR A 164 CG2 REMARK 470 ASP A 230 OD1 OD2 REMARK 470 THR A 317 OG1 CG2 REMARK 470 THR A 395 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 99 O ALA A 249 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 55.38 -141.07 REMARK 500 THR A 18 -167.85 -103.48 REMARK 500 SER A 52 70.27 40.12 REMARK 500 THR A 56 -61.20 -100.03 REMARK 500 SER A 66 -177.07 -69.12 REMARK 500 ASP A 95 -154.87 -159.42 REMARK 500 SER A 97 -14.48 81.26 REMARK 500 ASP A 98 67.20 39.39 REMARK 500 HIS A 104 75.99 -108.94 REMARK 500 CYS A 105 50.52 -149.42 REMARK 500 LYS A 142 72.63 56.95 REMARK 500 HIS A 146 71.12 43.75 REMARK 500 GLU A 178 1.08 58.44 REMARK 500 LEU A 194 -7.87 -56.63 REMARK 500 ALA A 212 72.01 63.37 REMARK 500 ASP A 222 59.03 -97.39 REMARK 500 ALA A 224 49.66 -85.43 REMARK 500 ALA A 249 -23.90 65.32 REMARK 500 VAL A 250 -15.69 -141.77 REMARK 500 HIS A 323 50.74 -93.15 REMARK 500 LYS A 336 -167.66 -74.85 REMARK 500 PRO A 337 127.50 -32.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 336 PRO A 337 -121.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 6J5C A 1 401 UNP P22338 POLG_LIV 281 681 SEQRES 1 A 401 SER ARG CYS THR HIS LEU GLU ASN ARG ASP PHE VAL THR SEQRES 2 A 401 GLY THR GLN GLY THR THR ARG VAL THR LEU VAL LEU GLU SEQRES 3 A 401 LEU GLY GLY CYS VAL THR ILE THR ALA GLU GLY LYS PRO SEQRES 4 A 401 SER MET ASP VAL TRP LEU ASP ALA ILE TYR GLN GLU SER SEQRES 5 A 401 PRO ALA LYS THR ARG GLU TYR CYS LEU HIS ALA LYS LEU SEQRES 6 A 401 SER GLU THR LYS VAL ALA ALA ARG CYS PRO THR MET GLY SEQRES 7 A 401 PRO ALA VAL LEU THR GLU GLU ARG GLN ILE GLY THR VAL SEQRES 8 A 401 CYS LYS ARG ASP GLN SER ASP ARG GLY TRP GLY ASN HIS SEQRES 9 A 401 CYS GLY LEU PHE GLY LYS GLY SER ILE VAL ALA CYS VAL SEQRES 10 A 401 LYS ALA ALA CYS GLU ALA LYS LYS LYS ALA THR GLY TYR SEQRES 11 A 401 VAL TYR ASP ALA ASN LYS ILE VAL TYR THR VAL LYS VAL SEQRES 12 A 401 GLU PRO HIS THR GLY ASP TYR VAL ALA ALA ASN GLU THR SEQRES 13 A 401 HIS LYS GLY ARG LYS THR ALA THR PHE THR VAL SER SER SEQRES 14 A 401 GLU LYS THR ILE LEU THR LEU GLY GLU TYR GLY ASP VAL SEQRES 15 A 401 SER LEU LEU CYS ARG VAL ALA SER GLY VAL ASP LEU ALA SEQRES 16 A 401 GLN THR ILE ILE LEU GLU LEU ASP LYS THR ALA GLU HIS SEQRES 17 A 401 LEU PRO THR ALA TRP GLN VAL HIS ARG ASP TRP PHE ASN SEQRES 18 A 401 ASP LEU ALA LEU PRO TRP LYS HIS ASP GLY ASN PRO HIS SEQRES 19 A 401 TRP ASN ASN ALA GLU ARG LEU VAL GLU PHE GLY ALA PRO SEQRES 20 A 401 HIS ALA VAL LYS MET ASP VAL TYR ASN LEU GLY ASP GLN SEQRES 21 A 401 THR GLY VAL LEU LEU ARG ALA LEU ALA GLY VAL PRO VAL SEQRES 22 A 401 ALA HIS ILE GLU GLY ASN LYS TYR HIS LEU LYS SER GLY SEQRES 23 A 401 HIS VAL THR CYS GLU VAL GLY LEU GLU LYS LEU LYS MET SEQRES 24 A 401 LYS GLY LEU THR TYR THR MET CYS ASP LYS SER LYS PHE SEQRES 25 A 401 ALA TRP LYS ARG THR PRO THR ASP SER GLY HIS ASP THR SEQRES 26 A 401 VAL VAL MET GLU VAL THR PHE SER GLY SER LYS PRO CYS SEQRES 27 A 401 ARG ILE PRO VAL ARG ALA VAL ALA HIS GLY SER PRO ASP SEQRES 28 A 401 VAL ASN VAL ALA MET LEU ILE THR PRO ASN PRO THR ILE SEQRES 29 A 401 GLU ASN ASP GLY GLY GLY PHE ILE GLU MET GLN LEU PRO SEQRES 30 A 401 PRO GLY ASP ASN ILE ILE TYR VAL GLY GLU LEU SER HIS SEQRES 31 A 401 GLN TRP PHE GLN THR GLY SER SER ILE GLY ARG HELIX 1 AA1 ASP A 133 ILE A 137 5 5 HELIX 2 AA2 ARG A 217 ASN A 221 1 5 HELIX 3 AA3 ASN A 237 ARG A 240 5 4 HELIX 4 AA4 GLN A 260 LEU A 268 1 9 SHEET 1 AA1 4 THR A 4 LEU A 6 0 SHEET 2 AA1 4 GLY A 29 ILE A 33 1 O THR A 32 N LEU A 6 SHEET 3 AA1 4 MET A 41 LEU A 45 -1 O VAL A 43 N VAL A 31 SHEET 4 AA1 4 GLU A 144 PRO A 145 -1 O GLU A 144 N ASP A 42 SHEET 1 AA2 4 ARG A 20 GLU A 26 0 SHEET 2 AA2 4 HIS A 287 LEU A 297 -1 O VAL A 288 N LEU A 25 SHEET 3 AA2 4 GLY A 180 ALA A 189 -1 N SER A 183 O GLY A 293 SHEET 4 AA2 4 LYS A 171 LEU A 176 -1 N LEU A 174 O VAL A 182 SHEET 1 AA3 5 THR A 164 PHE A 165 0 SHEET 2 AA3 5 VAL A 138 THR A 140 -1 N TYR A 139 O PHE A 165 SHEET 3 AA3 5 ILE A 48 GLU A 51 -1 N TYR A 49 O VAL A 138 SHEET 4 AA3 5 LYS A 280 HIS A 282 -1 O TYR A 281 N GLN A 50 SHEET 5 AA3 5 ILE A 276 GLU A 277 -1 N GLU A 277 O LYS A 280 SHEET 1 AA4 4 ALA A 54 CYS A 60 0 SHEET 2 AA4 4 LYS A 126 VAL A 131 -1 O GLY A 129 N THR A 56 SHEET 3 AA4 4 THR A 197 LEU A 202 -1 O GLU A 201 N THR A 128 SHEET 4 AA4 4 TRP A 213 HIS A 216 -1 O VAL A 215 N ILE A 198 SHEET 1 AA5 3 ALA A 63 LEU A 65 0 SHEET 2 AA5 3 SER A 112 CYS A 121 -1 O ALA A 120 N LYS A 64 SHEET 3 AA5 3 LYS A 69 ARG A 73 -1 N LYS A 69 O CYS A 116 SHEET 1 AA6 3 ALA A 63 LEU A 65 0 SHEET 2 AA6 3 SER A 112 CYS A 121 -1 O ALA A 120 N LYS A 64 SHEET 3 AA6 3 THR A 90 LYS A 93 -1 N VAL A 91 O VAL A 117 SHEET 1 AA7 2 VAL A 242 HIS A 248 0 SHEET 2 AA7 2 LYS A 251 ASN A 256 -1 O LYS A 251 N HIS A 248 SHEET 1 AA8 4 PHE A 312 ASP A 320 0 SHEET 2 AA8 4 VAL A 326 PHE A 332 -1 O VAL A 327 N THR A 319 SHEET 3 AA8 4 PHE A 371 GLN A 375 -1 O ILE A 372 N MET A 328 SHEET 4 AA8 4 MET A 356 LEU A 357 -1 N MET A 356 O GLN A 375 SHEET 1 AA9 2 CYS A 338 ARG A 339 0 SHEET 2 AA9 2 THR A 363 ILE A 364 -1 O ILE A 364 N CYS A 338 SHEET 1 AB1 3 VAL A 342 ALA A 346 0 SHEET 2 AB1 3 GLY A 379 VAL A 385 -1 O TYR A 384 N ARG A 343 SHEET 3 AB1 3 LEU A 388 GLN A 394 -1 O HIS A 390 N ILE A 383 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.05 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.04 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.04 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.03 SSBOND 5 CYS A 186 CYS A 290 1555 1555 2.04 SSBOND 6 CYS A 307 CYS A 338 1555 1555 2.04 CRYST1 163.334 163.334 163.334 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006122 0.00000