HEADER HYDROLASE 14-JAN-19 6J66 TITLE CHONDROITIN SULFATE/DERMATAN SULFATE ENDOLYTIC 4-O-SULFATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHONDROITIN SULFATE/DERMATAN SULFATE 4-O-ENDOSULFATASE COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 EC: 3.1.6.12; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO SP. FC509; SOURCE 3 ORGANISM_TAXID: 1540143; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-30A KEYWDS GLYCOSAMINOGLYCAN, CHONDROITIN SULFATE, DERMATAN SULFATE, SULFATASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.GU,F.LI,T.SU,S.WANG REVDAT 2 22-NOV-23 6J66 1 LINK REVDAT 1 10-JUL-19 6J66 0 JRNL AUTH S.WANG,T.SU,Q.ZHANG,J.GUAN,J.HE,L.GU,F.LI JRNL TITL COMPARATIVE STUDY OF TWO CHONDROITIN SULFATE/DERMATAN JRNL TITL 2 SULFATE 4-O-SULFATASES WITH HIGH IDENTITY. JRNL REF FRONT MICROBIOL V. 10 1309 2019 JRNL REFN ESSN 1664-302X JRNL PMID 31244815 JRNL DOI 10.3389/FMICB.2019.01309 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 74927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9219 - 5.8532 0.98 2686 147 0.1454 0.1750 REMARK 3 2 5.8532 - 4.6485 1.00 2671 141 0.1385 0.1509 REMARK 3 3 4.6485 - 4.0617 0.98 2660 139 0.1225 0.1545 REMARK 3 4 4.0617 - 3.6907 0.98 2638 143 0.1501 0.1771 REMARK 3 5 3.6907 - 3.4263 0.99 2636 156 0.1716 0.1780 REMARK 3 6 3.4263 - 3.2244 0.99 2667 125 0.1828 0.2415 REMARK 3 7 3.2244 - 3.0630 0.99 2627 139 0.1842 0.2091 REMARK 3 8 3.0630 - 2.9297 0.99 2658 147 0.1895 0.2062 REMARK 3 9 2.9297 - 2.8170 0.99 2641 139 0.1875 0.2405 REMARK 3 10 2.8170 - 2.7198 1.00 2670 153 0.1818 0.2134 REMARK 3 11 2.7198 - 2.6348 0.99 2646 144 0.1882 0.2493 REMARK 3 12 2.6348 - 2.5595 0.99 2599 153 0.1949 0.2441 REMARK 3 13 2.5595 - 2.4921 0.99 2643 148 0.1933 0.2287 REMARK 3 14 2.4921 - 2.4313 0.99 2647 142 0.1886 0.2162 REMARK 3 15 2.4313 - 2.3761 0.99 2636 138 0.1884 0.2159 REMARK 3 16 2.3761 - 2.3255 0.99 2651 119 0.1921 0.2001 REMARK 3 17 2.3255 - 2.2790 0.99 2657 130 0.2039 0.2703 REMARK 3 18 2.2790 - 2.2360 0.97 2589 129 0.3042 0.3922 REMARK 3 19 2.2360 - 2.1961 0.99 2652 139 0.2411 0.3081 REMARK 3 20 2.1961 - 2.1588 0.99 2636 138 0.2014 0.2642 REMARK 3 21 2.1588 - 2.1240 0.99 2676 145 0.2132 0.2776 REMARK 3 22 2.1240 - 2.0914 0.99 2579 145 0.2253 0.2827 REMARK 3 23 2.0914 - 2.0606 0.97 2621 121 0.2878 0.3316 REMARK 3 24 2.0606 - 2.0316 0.99 2603 138 0.2502 0.2687 REMARK 3 25 2.0316 - 2.0041 1.00 2665 151 0.2291 0.2750 REMARK 3 26 2.0041 - 1.9781 0.99 2643 134 0.2411 0.2720 REMARK 3 27 1.9781 - 1.9534 0.93 2465 122 0.2658 0.3328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7995 REMARK 3 ANGLE : 0.903 10870 REMARK 3 CHIRALITY : 0.054 1100 REMARK 3 PLANARITY : 0.006 1435 REMARK 3 DIHEDRAL : 14.079 4742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: 2QZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPS (PH 7.5), 20% (W/V) PEG REMARK 280 10000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.21300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.86600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.21300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.86600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 MET A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 MET A 22 REMARK 465 VAL A 23 REMARK 465 THR A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 CYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 ARG A 33 REMARK 465 PRO A 34 REMARK 465 LYS A 35 REMARK 465 THR A 36 REMARK 465 SER A 37 REMARK 465 VAL A 38 REMARK 465 SER A 39 REMARK 465 PRO A 40 REMARK 465 THR A 41 REMARK 465 ASP A 42 REMARK 465 LEU A 43 REMARK 465 LYS A 44 REMARK 465 ALA A 45 REMARK 465 THR A 521 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ILE B 3 REMARK 465 THR B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 MET B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 VAL B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 THR B 21 REMARK 465 MET B 22 REMARK 465 VAL B 23 REMARK 465 THR B 24 REMARK 465 ALA B 25 REMARK 465 GLY B 26 REMARK 465 CYS B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 THR B 30 REMARK 465 SER B 31 REMARK 465 SER B 32 REMARK 465 ARG B 33 REMARK 465 PRO B 34 REMARK 465 LYS B 35 REMARK 465 THR B 36 REMARK 465 SER B 37 REMARK 465 VAL B 38 REMARK 465 SER B 39 REMARK 465 PRO B 40 REMARK 465 THR B 41 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 LYS B 44 REMARK 465 ALA B 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 57 32.02 71.07 REMARK 500 GLN A 68 -83.12 -121.54 REMARK 500 TRP A 159 -61.42 -90.83 REMARK 500 SER A 171 138.79 -171.05 REMARK 500 TYR A 197 74.52 -158.04 REMARK 500 TYR A 202 116.41 -174.30 REMARK 500 GLN A 225 147.00 -178.40 REMARK 500 THR A 355 -103.29 -136.63 REMARK 500 LYS A 356 -159.25 -123.84 REMARK 500 TRP A 372 79.20 -160.63 REMARK 500 GLU A 495 -56.47 -124.24 REMARK 500 GLN B 68 -90.80 -122.71 REMARK 500 SER B 171 143.09 -174.02 REMARK 500 TYR B 197 77.02 -150.03 REMARK 500 TYR B 202 113.98 -169.10 REMARK 500 GLN B 225 145.38 -173.47 REMARK 500 THR B 355 -101.19 -137.22 REMARK 500 LYS B 356 -154.31 -129.32 REMARK 500 MET B 368 101.91 -167.33 REMARK 500 TRP B 372 78.74 -163.50 REMARK 500 GLU B 495 -57.38 -121.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 956 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 56 OD2 50.5 REMARK 620 3 DDZ A 96 OG2 131.9 97.0 REMARK 620 4 ASP A 343 OD2 96.6 71.0 104.9 REMARK 620 5 HOH A 727 O 88.4 110.1 69.2 174.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 OD1 REMARK 620 2 ASP B 56 OD2 51.5 REMARK 620 3 DDZ B 96 OG2 133.3 99.2 REMARK 620 4 ASP B 343 OD2 93.0 65.7 107.5 REMARK 620 5 HOH B 709 O 91.6 113.8 65.7 173.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 95 and DDZ B REMARK 800 96 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DDZ B 96 and THR B REMARK 800 97 DBREF1 6J66 A 1 521 UNP A0A0C5AQI9_9VIBR DBREF2 6J66 A A0A0C5AQI9 1 521 DBREF1 6J66 B 1 521 UNP A0A0C5AQI9_9VIBR DBREF2 6J66 B A0A0C5AQI9 1 521 SEQADV 6J66 DDZ A 96 UNP A0A0C5AQI CYS 96 ENGINEERED MUTATION SEQADV 6J66 DDZ B 96 UNP A0A0C5AQI CYS 96 ENGINEERED MUTATION SEQRES 1 A 521 MET SER ILE THR ARG ARG LYS LEU LEU LYS GLY MET ALA SEQRES 2 A 521 ALA THR SER ALA VAL ALA ALA THR MET VAL THR ALA GLY SEQRES 3 A 521 CYS SER ALA THR SER SER ARG PRO LYS THR SER VAL SER SEQRES 4 A 521 PRO THR ASP LEU LYS ALA LYS LYS PRO ASN LEU LEU ILE SEQRES 5 A 521 VAL PHE PRO ASP GLU MET ARG ALA HIS THR LEU GLY PHE SEQRES 6 A 521 MET ASN GLN ASP ARG SER TYR THR PRO ASN LEU ASN LYS SEQRES 7 A 521 PHE ALA LYS GLU SER ALA VAL LEU LYS GLN ALA VAL SER SEQRES 8 A 521 ASN PHE PRO LEU DDZ THR PRO PHE ARG GLY MET LEU MET SEQRES 9 A 521 THR GLY GLN TYR PRO TYR ARG ASN GLY ILE GLN GLY ASN SEQRES 10 A 521 SER HIS THR ALA MET PRO GLY ASN PHE GLY GLY LYS ASP SEQRES 11 A 521 PHE GLY ILE GLU LEU LYS LYS SER THR ARG THR TRP SER SEQRES 12 A 521 ASP ILE LEU LYS ASP GLN GLY TYR SER MET GLY TYR ILE SEQRES 13 A 521 GLY LYS TRP HIS LEU ASP THR PRO GLU ALA PRO PHE ILE SEQRES 14 A 521 PRO SER TYR ASN ASN PRO MET GLU GLY ARG TYR TRP ASN SEQRES 15 A 521 ASP TRP THR ALA PRO ASP ARG ARG HIS GLY PHE ASP PHE SEQRES 16 A 521 TRP TYR ALA TYR GLY THR TYR ASP LYS HIS LEU THR PRO SEQRES 17 A 521 ILE TYR TRP THR ASN GLU THR PRO ARG ASP GLN PRO ILE SEQRES 18 A 521 LYS VAL ASN GLN TRP SER PRO GLU HIS GLU ALA ASP ILE SEQRES 19 A 521 ALA ILE LYS TYR LEU ARG ASN GLU ASN GLY HIS TYR ARG SEQRES 20 A 521 ASP ARG ASP LYS PRO PHE THR LEU VAL VAL SER MET ASN SEQRES 21 A 521 PRO PRO HIS SER PRO TYR ASP GLN VAL PRO GLN LYS TYR SEQRES 22 A 521 LEU ASP LYS PHE ASP GLY GLU THR SER ARG SER LEU ASN SEQRES 23 A 521 THR ARG PRO ASN VAL GLN TRP ASP GLN GLU TYR LEU GLU SEQRES 24 A 521 GLY TYR GLY PRO GLU TYR PHE LYS GLU TYR MET ALA MET SEQRES 25 A 521 VAL HIS GLY VAL ASP ASP GLN PHE GLY ARG ILE ILE ASP SEQRES 26 A 521 GLU LEU ASP ARG LEU GLY LEU THR GLU ASP THR LEU VAL SEQRES 27 A 521 VAL PHE PHE SER ASP HIS GLY CYS CYS MET GLY SER ASN SEQRES 28 A 521 GLY LYS PRO THR LYS ASN VAL HIS TYR GLU GLU ALA MET SEQRES 29 A 521 ARG ILE PRO MET MET PHE ARG TRP PRO GLY LYS LEU THR SEQRES 30 A 521 PRO ARG GLN ASP ASP LEU LEU PHE SER ALA PRO ASP ILE SEQRES 31 A 521 TYR PRO THR LEU PHE GLY LEU MET GLY LEU GLU GLU LEU SEQRES 32 A 521 ILE PRO ASP THR VAL GLU GLY THR ASN PHE ALA LYS THR SEQRES 33 A 521 VAL SER GLY ILE GLU GLY ASP THR ARG PRO THR SER GLN SEQRES 34 A 521 LEU TYR THR PHE MET PRO TYR GLY GLY GLN SER TYR GLY SEQRES 35 A 521 ARG ARG GLY VAL ARG THR ASP ARG TYR THR LEU MET ILE SEQRES 36 A 521 ASP ARG LYS ILE ALA LYS PRO LEU THR PHE VAL LEU HIS SEQRES 37 A 521 ASP ASN GLN ASN ASP PRO TYR GLN MET THR ASN ILE ALA SEQRES 38 A 521 ASN ASP ASN GLN GLU LEU ILE ALA GLN LEU ILE GLU LYS SEQRES 39 A 521 GLU LEU ILE PRO TRP LEU GLU LEU THR GLY ASP PRO TRP SEQRES 40 A 521 ARG PRO THR GLU VAL PRO ALA SER VAL ALA LYS ALA TYR SEQRES 41 A 521 THR SEQRES 1 B 521 MET SER ILE THR ARG ARG LYS LEU LEU LYS GLY MET ALA SEQRES 2 B 521 ALA THR SER ALA VAL ALA ALA THR MET VAL THR ALA GLY SEQRES 3 B 521 CYS SER ALA THR SER SER ARG PRO LYS THR SER VAL SER SEQRES 4 B 521 PRO THR ASP LEU LYS ALA LYS LYS PRO ASN LEU LEU ILE SEQRES 5 B 521 VAL PHE PRO ASP GLU MET ARG ALA HIS THR LEU GLY PHE SEQRES 6 B 521 MET ASN GLN ASP ARG SER TYR THR PRO ASN LEU ASN LYS SEQRES 7 B 521 PHE ALA LYS GLU SER ALA VAL LEU LYS GLN ALA VAL SER SEQRES 8 B 521 ASN PHE PRO LEU DDZ THR PRO PHE ARG GLY MET LEU MET SEQRES 9 B 521 THR GLY GLN TYR PRO TYR ARG ASN GLY ILE GLN GLY ASN SEQRES 10 B 521 SER HIS THR ALA MET PRO GLY ASN PHE GLY GLY LYS ASP SEQRES 11 B 521 PHE GLY ILE GLU LEU LYS LYS SER THR ARG THR TRP SER SEQRES 12 B 521 ASP ILE LEU LYS ASP GLN GLY TYR SER MET GLY TYR ILE SEQRES 13 B 521 GLY LYS TRP HIS LEU ASP THR PRO GLU ALA PRO PHE ILE SEQRES 14 B 521 PRO SER TYR ASN ASN PRO MET GLU GLY ARG TYR TRP ASN SEQRES 15 B 521 ASP TRP THR ALA PRO ASP ARG ARG HIS GLY PHE ASP PHE SEQRES 16 B 521 TRP TYR ALA TYR GLY THR TYR ASP LYS HIS LEU THR PRO SEQRES 17 B 521 ILE TYR TRP THR ASN GLU THR PRO ARG ASP GLN PRO ILE SEQRES 18 B 521 LYS VAL ASN GLN TRP SER PRO GLU HIS GLU ALA ASP ILE SEQRES 19 B 521 ALA ILE LYS TYR LEU ARG ASN GLU ASN GLY HIS TYR ARG SEQRES 20 B 521 ASP ARG ASP LYS PRO PHE THR LEU VAL VAL SER MET ASN SEQRES 21 B 521 PRO PRO HIS SER PRO TYR ASP GLN VAL PRO GLN LYS TYR SEQRES 22 B 521 LEU ASP LYS PHE ASP GLY GLU THR SER ARG SER LEU ASN SEQRES 23 B 521 THR ARG PRO ASN VAL GLN TRP ASP GLN GLU TYR LEU GLU SEQRES 24 B 521 GLY TYR GLY PRO GLU TYR PHE LYS GLU TYR MET ALA MET SEQRES 25 B 521 VAL HIS GLY VAL ASP ASP GLN PHE GLY ARG ILE ILE ASP SEQRES 26 B 521 GLU LEU ASP ARG LEU GLY LEU THR GLU ASP THR LEU VAL SEQRES 27 B 521 VAL PHE PHE SER ASP HIS GLY CYS CYS MET GLY SER ASN SEQRES 28 B 521 GLY LYS PRO THR LYS ASN VAL HIS TYR GLU GLU ALA MET SEQRES 29 B 521 ARG ILE PRO MET MET PHE ARG TRP PRO GLY LYS LEU THR SEQRES 30 B 521 PRO ARG GLN ASP ASP LEU LEU PHE SER ALA PRO ASP ILE SEQRES 31 B 521 TYR PRO THR LEU PHE GLY LEU MET GLY LEU GLU GLU LEU SEQRES 32 B 521 ILE PRO ASP THR VAL GLU GLY THR ASN PHE ALA LYS THR SEQRES 33 B 521 VAL SER GLY ILE GLU GLY ASP THR ARG PRO THR SER GLN SEQRES 34 B 521 LEU TYR THR PHE MET PRO TYR GLY GLY GLN SER TYR GLY SEQRES 35 B 521 ARG ARG GLY VAL ARG THR ASP ARG TYR THR LEU MET ILE SEQRES 36 B 521 ASP ARG LYS ILE ALA LYS PRO LEU THR PHE VAL LEU HIS SEQRES 37 B 521 ASP ASN GLN ASN ASP PRO TYR GLN MET THR ASN ILE ALA SEQRES 38 B 521 ASN ASP ASN GLN GLU LEU ILE ALA GLN LEU ILE GLU LYS SEQRES 39 B 521 GLU LEU ILE PRO TRP LEU GLU LEU THR GLY ASP PRO TRP SEQRES 40 B 521 ARG PRO THR GLU VAL PRO ALA SER VAL ALA LYS ALA TYR SEQRES 41 B 521 THR HET DDZ A 96 7 HET DDZ B 96 7 HET CA A 600 1 HET CA B 600 1 HETNAM DDZ 3,3-DIHYDROXY L-ALANINE HETNAM CA CALCIUM ION HETSYN DDZ 3-HYDROXY-L-SERINE FORMUL 1 DDZ 2(C3 H7 N O4) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *511(H2 O) HELIX 1 AA1 ARG A 59 ASN A 67 5 9 HELIX 2 AA2 THR A 73 GLU A 82 1 10 HELIX 3 AA3 LEU A 95 GLY A 106 1 12 HELIX 4 AA4 TYR A 108 GLY A 113 1 6 HELIX 5 AA5 GLY A 127 GLY A 132 5 6 HELIX 6 AA6 THR A 141 GLN A 149 1 9 HELIX 7 AA7 ALA A 186 ARG A 190 5 5 HELIX 8 AA8 TRP A 226 ASN A 241 1 16 HELIX 9 AA9 PRO A 270 ASP A 275 1 6 HELIX 10 AB1 LYS A 276 ASP A 278 5 3 HELIX 11 AB2 THR A 281 ASN A 286 1 6 HELIX 12 AB3 GLY A 302 GLU A 304 5 3 HELIX 13 AB4 TYR A 305 LEU A 330 1 26 HELIX 14 AB5 LEU A 332 GLU A 334 5 3 HELIX 15 AB6 GLY A 349 LYS A 353 5 5 HELIX 16 AB7 TYR A 360 ARG A 365 1 6 HELIX 17 AB8 SER A 386 PRO A 388 5 3 HELIX 18 AB9 ASP A 389 MET A 398 1 10 HELIX 19 AC1 LEU A 400 ILE A 404 5 5 HELIX 20 AC2 PHE A 413 SER A 418 1 6 HELIX 21 AC3 ASN A 484 GLU A 495 1 12 HELIX 22 AC4 GLU A 495 GLY A 504 1 10 HELIX 23 AC5 PRO A 513 LYS A 518 5 6 HELIX 24 AC6 ARG B 59 ASN B 67 5 9 HELIX 25 AC7 THR B 73 GLU B 82 1 10 HELIX 26 AC8 LEU B 95 GLY B 106 1 12 HELIX 27 AC9 TYR B 108 GLY B 113 1 6 HELIX 28 AD1 GLY B 127 GLY B 132 5 6 HELIX 29 AD2 THR B 141 GLN B 149 1 9 HELIX 30 AD3 ALA B 186 ARG B 190 5 5 HELIX 31 AD4 TRP B 226 ASN B 241 1 16 HELIX 32 AD5 GLU B 242 HIS B 245 5 4 HELIX 33 AD6 PRO B 270 LYS B 276 1 7 HELIX 34 AD7 THR B 281 ASN B 286 1 6 HELIX 35 AD8 GLY B 302 GLU B 304 5 3 HELIX 36 AD9 TYR B 305 LEU B 330 1 26 HELIX 37 AE1 LEU B 332 GLU B 334 5 3 HELIX 38 AE2 GLY B 349 LYS B 353 5 5 HELIX 39 AE3 TYR B 360 ARG B 365 1 6 HELIX 40 AE4 SER B 386 PRO B 388 5 3 HELIX 41 AE5 ASP B 389 MET B 398 1 10 HELIX 42 AE6 LEU B 400 ILE B 404 5 5 HELIX 43 AE7 PHE B 413 SER B 418 1 6 HELIX 44 AE8 ILE B 480 ASP B 483 5 4 HELIX 45 AE9 ASN B 484 GLU B 495 1 12 HELIX 46 AF1 GLU B 495 GLY B 504 1 10 HELIX 47 AF2 PRO B 513 THR B 521 5 9 SHEET 1 AA110 ILE A 221 LYS A 222 0 SHEET 2 AA110 ILE A 209 THR A 212 -1 N TYR A 210 O ILE A 221 SHEET 3 AA110 PHE A 195 TYR A 199 -1 N ALA A 198 O TRP A 211 SHEET 4 AA110 SER A 152 LYS A 158 1 N GLY A 157 O TYR A 197 SHEET 5 AA110 PHE A 253 SER A 258 1 O VAL A 256 N ILE A 156 SHEET 6 AA110 ASN A 49 PHE A 54 1 N ILE A 52 O LEU A 255 SHEET 7 AA110 THR A 336 PHE A 341 1 O LEU A 337 N ASN A 49 SHEET 8 AA110 MET A 368 ARG A 371 -1 O ARG A 371 N VAL A 338 SHEET 9 AA110 ALA A 84 LEU A 86 -1 N ALA A 84 O PHE A 370 SHEET 10 AA110 ARG A 379 ASP A 381 1 O ARG A 379 N VAL A 85 SHEET 1 AA2 2 THR A 120 ALA A 121 0 SHEET 2 AA2 2 ARG A 179 TYR A 180 -1 O TYR A 180 N THR A 120 SHEET 1 AA3 4 GLN A 429 PHE A 433 0 SHEET 2 AA3 4 GLY A 442 ARG A 447 -1 O ARG A 443 N PHE A 433 SHEET 3 AA3 4 TYR A 451 ARG A 457 -1 O ILE A 455 N ARG A 444 SHEET 4 AA3 4 THR A 464 ASP A 469 -1 O VAL A 466 N MET A 454 SHEET 1 AA410 ILE B 221 LYS B 222 0 SHEET 2 AA410 ILE B 209 THR B 212 -1 N TYR B 210 O ILE B 221 SHEET 3 AA410 PHE B 195 TYR B 199 -1 N ALA B 198 O TRP B 211 SHEET 4 AA410 SER B 152 LYS B 158 1 N GLY B 157 O TYR B 197 SHEET 5 AA410 PHE B 253 SER B 258 1 O SER B 258 N ILE B 156 SHEET 6 AA410 ASN B 49 PHE B 54 1 N ILE B 52 O VAL B 257 SHEET 7 AA410 THR B 336 PHE B 341 1 O LEU B 337 N ASN B 49 SHEET 8 AA410 MET B 368 ARG B 371 -1 O ARG B 371 N VAL B 338 SHEET 9 AA410 ALA B 84 LEU B 86 -1 N LEU B 86 O MET B 368 SHEET 10 AA410 ARG B 379 ASP B 381 1 O ARG B 379 N VAL B 85 SHEET 1 AA5 2 THR B 120 ALA B 121 0 SHEET 2 AA5 2 ARG B 179 TYR B 180 -1 O TYR B 180 N THR B 120 SHEET 1 AA6 4 GLN B 429 PHE B 433 0 SHEET 2 AA6 4 GLY B 442 ARG B 447 -1 O ARG B 443 N PHE B 433 SHEET 3 AA6 4 TYR B 451 ARG B 457 -1 O ILE B 455 N ARG B 444 SHEET 4 AA6 4 THR B 464 ASP B 469 -1 O VAL B 466 N MET B 454 LINK C LEU A 95 N DDZ A 96 1555 1555 1.33 LINK C DDZ A 96 N THR A 97 1555 1555 1.32 LINK C LEU B 95 N DDZ B 96 1555 1555 1.33 LINK C DDZ B 96 N THR B 97 1555 1555 1.32 LINK OD1 ASP A 56 CA CA A 600 1555 1555 2.23 LINK OD2 ASP A 56 CA CA A 600 1555 1555 2.81 LINK OG2 DDZ A 96 CA CA A 600 1555 1555 2.20 LINK OD2 ASP A 343 CA CA A 600 1555 1555 2.20 LINK CA CA A 600 O HOH A 727 1555 1555 2.30 LINK OD1 ASP B 56 CA CA B 600 1555 1555 2.17 LINK OD2 ASP B 56 CA CA B 600 1555 1555 2.77 LINK OG2 DDZ B 96 CA CA B 600 1555 1555 2.32 LINK OD2 ASP B 343 CA CA B 600 1555 1555 2.23 LINK CA CA B 600 O HOH B 709 1555 1555 2.24 CISPEP 1 ALA A 166 PRO A 167 0 -2.17 CISPEP 2 ASN A 174 PRO A 175 0 -1.52 CISPEP 3 PRO A 261 PRO A 262 0 9.38 CISPEP 4 SER A 264 PRO A 265 0 3.14 CISPEP 5 ALA B 166 PRO B 167 0 -5.26 CISPEP 6 ASN B 174 PRO B 175 0 1.01 CISPEP 7 PRO B 261 PRO B 262 0 9.38 CISPEP 8 SER B 264 PRO B 265 0 5.23 SITE 1 AC1 5 ASP A 56 DDZ A 96 ASP A 343 HIS A 344 SITE 2 AC1 5 HOH A 727 SITE 1 AC2 5 ASP B 56 DDZ B 96 ASP B 343 HIS B 344 SITE 2 AC2 5 HOH B 709 SITE 1 AC3 14 ASP B 56 PHE B 93 PRO B 94 THR B 97 SITE 2 AC3 14 PRO B 98 PHE B 99 ARG B 100 LYS B 158 SITE 3 AC3 14 HIS B 160 ASP B 343 HIS B 344 LYS B 356 SITE 4 AC3 14 CA B 600 HOH B 709 SITE 1 AC4 14 ASP B 56 LEU B 95 PRO B 98 PHE B 99 SITE 2 AC4 14 ARG B 100 GLY B 101 ILE B 114 GLY B 116 SITE 3 AC4 14 LYS B 158 HIS B 160 ASP B 343 HIS B 344 SITE 4 AC4 14 CA B 600 HOH B 709 CRYST1 116.426 107.732 87.569 90.00 104.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008589 0.000000 0.002147 0.00000 SCALE2 0.000000 0.009282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011771 0.00000