data_6J6J # _entry.id 6J6J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6J6J pdb_00006j6j 10.2210/pdb6j6j/pdb WWPDB D_1300010555 ? ? EMDB EMD-0689 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-29 2 'Structure model' 1 1 2019-06-19 3 'Structure model' 1 2 2019-11-06 4 'Structure model' 1 3 2020-08-05 5 'Structure model' 1 4 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_sites 4 3 'Structure model' cell 5 4 'Structure model' em_imaging_optics 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' 7 3 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 8 3 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 9 3 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 10 3 'Structure model' '_cell.Z_PDB' 11 4 'Structure model' '_em_imaging_optics.phase_plate' 12 4 'Structure model' '_em_imaging_optics.sph_aberration_corrector' 13 5 'Structure model' '_database_2.pdbx_DOI' 14 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6J6J _pdbx_database_status.recvd_initial_deposition_date 2019-01-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'biotin-bound streptavidin' EMD-0689 'associated EM volume' EMDB 'apo-state streptavidin' EMD-0690 'other EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fan, X.' 1 ? 'Wang, J.' 2 ? 'Lei, J.L.' 3 ? 'Wang, H.W.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 2386 _citation.page_last 2386 _citation.title 'Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-10368-w _citation.pdbx_database_id_PubMed 31160591 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fan, X.' 1 ? primary 'Wang, J.' 2 ? primary 'Zhang, X.' 3 ? primary 'Yang, Z.' 4 ? primary 'Zhang, J.C.' 5 ? primary 'Zhao, L.' 6 ? primary 'Peng, H.L.' 7 ? primary 'Lei, J.' 8 ? primary 'Wang, H.W.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Streptavidin 12596.641 4 ? ? ? ? 2 non-polymer syn BIOTIN 244.311 4 ? ? ? ? 3 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQ YVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK ; _entity_poly.pdbx_seq_one_letter_code_can ;GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQ YVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BIOTIN BTN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 THR n 1 4 GLY n 1 5 THR n 1 6 TRP n 1 7 TYR n 1 8 ASN n 1 9 GLN n 1 10 LEU n 1 11 GLY n 1 12 SER n 1 13 THR n 1 14 PHE n 1 15 ILE n 1 16 VAL n 1 17 THR n 1 18 ALA n 1 19 GLY n 1 20 ALA n 1 21 ASP n 1 22 GLY n 1 23 ALA n 1 24 LEU n 1 25 THR n 1 26 GLY n 1 27 THR n 1 28 TYR n 1 29 GLU n 1 30 SER n 1 31 ALA n 1 32 VAL n 1 33 GLY n 1 34 ASN n 1 35 ALA n 1 36 GLU n 1 37 SER n 1 38 ARG n 1 39 TYR n 1 40 VAL n 1 41 LEU n 1 42 THR n 1 43 GLY n 1 44 ARG n 1 45 TYR n 1 46 ASP n 1 47 SER n 1 48 ALA n 1 49 PRO n 1 50 ALA n 1 51 THR n 1 52 ASP n 1 53 GLY n 1 54 SER n 1 55 GLY n 1 56 THR n 1 57 ALA n 1 58 LEU n 1 59 GLY n 1 60 TRP n 1 61 THR n 1 62 VAL n 1 63 ALA n 1 64 TRP n 1 65 LYS n 1 66 ASN n 1 67 ASN n 1 68 TYR n 1 69 ARG n 1 70 ASN n 1 71 ALA n 1 72 HIS n 1 73 SER n 1 74 ALA n 1 75 THR n 1 76 THR n 1 77 TRP n 1 78 SER n 1 79 GLY n 1 80 GLN n 1 81 TYR n 1 82 VAL n 1 83 GLY n 1 84 GLY n 1 85 ALA n 1 86 GLU n 1 87 ALA n 1 88 ARG n 1 89 ILE n 1 90 ASN n 1 91 THR n 1 92 GLN n 1 93 TRP n 1 94 LEU n 1 95 LEU n 1 96 THR n 1 97 SER n 1 98 GLY n 1 99 THR n 1 100 THR n 1 101 GLU n 1 102 ALA n 1 103 ASN n 1 104 ALA n 1 105 TRP n 1 106 LYS n 1 107 SER n 1 108 THR n 1 109 LEU n 1 110 VAL n 1 111 GLY n 1 112 HIS n 1 113 ASP n 1 114 THR n 1 115 PHE n 1 116 THR n 1 117 LYS n 1 118 VAL n 1 119 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 119 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces avidinii' _entity_src_nat.pdbx_ncbi_taxonomy_id 1895 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BTN non-polymer . BIOTIN ? 'C10 H16 N2 O3 S' 244.311 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 16 16 GLY GLY A . n A 1 2 ILE 2 17 17 ILE ILE A . n A 1 3 THR 3 18 18 THR THR A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 THR 5 20 20 THR THR A . n A 1 6 TRP 6 21 21 TRP TRP A . n A 1 7 TYR 7 22 22 TYR TYR A . n A 1 8 ASN 8 23 23 ASN ASN A . n A 1 9 GLN 9 24 24 GLN GLN A . n A 1 10 LEU 10 25 25 LEU LEU A . n A 1 11 GLY 11 26 26 GLY GLY A . n A 1 12 SER 12 27 27 SER SER A . n A 1 13 THR 13 28 28 THR THR A . n A 1 14 PHE 14 29 29 PHE PHE A . n A 1 15 ILE 15 30 30 ILE ILE A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 THR 17 32 32 THR THR A . n A 1 18 ALA 18 33 33 ALA ALA A . n A 1 19 GLY 19 34 34 GLY GLY A . n A 1 20 ALA 20 35 35 ALA ALA A . n A 1 21 ASP 21 36 36 ASP ASP A . n A 1 22 GLY 22 37 37 GLY GLY A . n A 1 23 ALA 23 38 38 ALA ALA A . n A 1 24 LEU 24 39 39 LEU LEU A . n A 1 25 THR 25 40 40 THR THR A . n A 1 26 GLY 26 41 41 GLY GLY A . n A 1 27 THR 27 42 42 THR THR A . n A 1 28 TYR 28 43 43 TYR TYR A . n A 1 29 GLU 29 44 44 GLU GLU A . n A 1 30 SER 30 45 45 SER ALA A . n A 1 31 ALA 31 46 46 ALA ALA A . n A 1 32 VAL 32 47 47 VAL VAL A . n A 1 33 GLY 33 48 48 GLY GLY A . n A 1 34 ASN 34 49 49 ASN ASN A . n A 1 35 ALA 35 50 50 ALA ALA A . n A 1 36 GLU 36 51 51 GLU GLU A . n A 1 37 SER 37 52 52 SER SER A . n A 1 38 ARG 38 53 53 ARG ARG A . n A 1 39 TYR 39 54 54 TYR TYR A . n A 1 40 VAL 40 55 55 VAL VAL A . n A 1 41 LEU 41 56 56 LEU LEU A . n A 1 42 THR 42 57 57 THR THR A . n A 1 43 GLY 43 58 58 GLY GLY A . n A 1 44 ARG 44 59 59 ARG ARG A . n A 1 45 TYR 45 60 60 TYR TYR A . n A 1 46 ASP 46 61 61 ASP ASP A . n A 1 47 SER 47 62 62 SER SER A . n A 1 48 ALA 48 63 63 ALA ALA A . n A 1 49 PRO 49 64 64 PRO PRO A . n A 1 50 ALA 50 65 65 ALA ALA A . n A 1 51 THR 51 66 66 THR THR A . n A 1 52 ASP 52 67 67 ASP ASP A . n A 1 53 GLY 53 68 68 GLY GLY A . n A 1 54 SER 54 69 69 SER SER A . n A 1 55 GLY 55 70 70 GLY GLY A . n A 1 56 THR 56 71 71 THR THR A . n A 1 57 ALA 57 72 72 ALA ALA A . n A 1 58 LEU 58 73 73 LEU LEU A . n A 1 59 GLY 59 74 74 GLY GLY A . n A 1 60 TRP 60 75 75 TRP TRP A . n A 1 61 THR 61 76 76 THR THR A . n A 1 62 VAL 62 77 77 VAL VAL A . n A 1 63 ALA 63 78 78 ALA ALA A . n A 1 64 TRP 64 79 79 TRP TRP A . n A 1 65 LYS 65 80 80 LYS LYS A . n A 1 66 ASN 66 81 81 ASN ASN A . n A 1 67 ASN 67 82 82 ASN ASN A . n A 1 68 TYR 68 83 83 TYR TYR A . n A 1 69 ARG 69 84 84 ARG ARG A . n A 1 70 ASN 70 85 85 ASN ASN A . n A 1 71 ALA 71 86 86 ALA ALA A . n A 1 72 HIS 72 87 87 HIS HIS A . n A 1 73 SER 73 88 88 SER SER A . n A 1 74 ALA 74 89 89 ALA ALA A . n A 1 75 THR 75 90 90 THR THR A . n A 1 76 THR 76 91 91 THR THR A . n A 1 77 TRP 77 92 92 TRP TRP A . n A 1 78 SER 78 93 93 SER SER A . n A 1 79 GLY 79 94 94 GLY GLY A . n A 1 80 GLN 80 95 95 GLN GLN A . n A 1 81 TYR 81 96 96 TYR TYR A . n A 1 82 VAL 82 97 97 VAL VAL A . n A 1 83 GLY 83 98 98 GLY GLY A . n A 1 84 GLY 84 99 99 GLY GLY A . n A 1 85 ALA 85 100 100 ALA ALA A . n A 1 86 GLU 86 101 101 GLU GLU A . n A 1 87 ALA 87 102 102 ALA ALA A . n A 1 88 ARG 88 103 103 ARG ARG A . n A 1 89 ILE 89 104 104 ILE ILE A . n A 1 90 ASN 90 105 105 ASN ASN A . n A 1 91 THR 91 106 106 THR THR A . n A 1 92 GLN 92 107 107 GLN GLN A . n A 1 93 TRP 93 108 108 TRP TRP A . n A 1 94 LEU 94 109 109 LEU LEU A . n A 1 95 LEU 95 110 110 LEU LEU A . n A 1 96 THR 96 111 111 THR THR A . n A 1 97 SER 97 112 112 SER SER A . n A 1 98 GLY 98 113 113 GLY GLY A . n A 1 99 THR 99 114 114 THR THR A . n A 1 100 THR 100 115 115 THR THR A . n A 1 101 GLU 101 116 116 GLU GLU A . n A 1 102 ALA 102 117 117 ALA ALA A . n A 1 103 ASN 103 118 118 ASN ASN A . n A 1 104 ALA 104 119 119 ALA ALA A . n A 1 105 TRP 105 120 120 TRP TRP A . n A 1 106 LYS 106 121 121 LYS LYS A . n A 1 107 SER 107 122 122 SER SER A . n A 1 108 THR 108 123 123 THR THR A . n A 1 109 LEU 109 124 124 LEU LEU A . n A 1 110 VAL 110 125 125 VAL VAL A . n A 1 111 GLY 111 126 126 GLY GLY A . n A 1 112 HIS 112 127 127 HIS HIS A . n A 1 113 ASP 113 128 128 ASP ALA A . n A 1 114 THR 114 129 129 THR THR A . n A 1 115 PHE 115 130 130 PHE PHE A . n A 1 116 THR 116 131 131 THR THR A . n A 1 117 LYS 117 132 132 LYS LYS A . n A 1 118 VAL 118 133 133 VAL VAL A . n A 1 119 LYS 119 134 134 LYS LYS A . n B 1 1 GLY 1 16 16 GLY GLY B . n B 1 2 ILE 2 17 17 ILE ILE B . n B 1 3 THR 3 18 18 THR THR B . n B 1 4 GLY 4 19 19 GLY GLY B . n B 1 5 THR 5 20 20 THR THR B . n B 1 6 TRP 6 21 21 TRP TRP B . n B 1 7 TYR 7 22 22 TYR TYR B . n B 1 8 ASN 8 23 23 ASN ASN B . n B 1 9 GLN 9 24 24 GLN GLN B . n B 1 10 LEU 10 25 25 LEU LEU B . n B 1 11 GLY 11 26 26 GLY GLY B . n B 1 12 SER 12 27 27 SER SER B . n B 1 13 THR 13 28 28 THR THR B . n B 1 14 PHE 14 29 29 PHE PHE B . n B 1 15 ILE 15 30 30 ILE ILE B . n B 1 16 VAL 16 31 31 VAL VAL B . n B 1 17 THR 17 32 32 THR THR B . n B 1 18 ALA 18 33 33 ALA ALA B . n B 1 19 GLY 19 34 34 GLY GLY B . n B 1 20 ALA 20 35 35 ALA ALA B . n B 1 21 ASP 21 36 36 ASP ASP B . n B 1 22 GLY 22 37 37 GLY GLY B . n B 1 23 ALA 23 38 38 ALA ALA B . n B 1 24 LEU 24 39 39 LEU LEU B . n B 1 25 THR 25 40 40 THR THR B . n B 1 26 GLY 26 41 41 GLY GLY B . n B 1 27 THR 27 42 42 THR THR B . n B 1 28 TYR 28 43 43 TYR TYR B . n B 1 29 GLU 29 44 44 GLU GLU B . n B 1 30 SER 30 45 45 SER ALA B . n B 1 31 ALA 31 46 46 ALA ALA B . n B 1 32 VAL 32 47 47 VAL VAL B . n B 1 33 GLY 33 48 48 GLY GLY B . n B 1 34 ASN 34 49 49 ASN ASN B . n B 1 35 ALA 35 50 50 ALA ALA B . n B 1 36 GLU 36 51 51 GLU GLU B . n B 1 37 SER 37 52 52 SER SER B . n B 1 38 ARG 38 53 53 ARG ARG B . n B 1 39 TYR 39 54 54 TYR TYR B . n B 1 40 VAL 40 55 55 VAL VAL B . n B 1 41 LEU 41 56 56 LEU LEU B . n B 1 42 THR 42 57 57 THR THR B . n B 1 43 GLY 43 58 58 GLY GLY B . n B 1 44 ARG 44 59 59 ARG ARG B . n B 1 45 TYR 45 60 60 TYR TYR B . n B 1 46 ASP 46 61 61 ASP ASP B . n B 1 47 SER 47 62 62 SER SER B . n B 1 48 ALA 48 63 63 ALA ALA B . n B 1 49 PRO 49 64 64 PRO PRO B . n B 1 50 ALA 50 65 65 ALA ALA B . n B 1 51 THR 51 66 66 THR THR B . n B 1 52 ASP 52 67 67 ASP ASP B . n B 1 53 GLY 53 68 68 GLY GLY B . n B 1 54 SER 54 69 69 SER SER B . n B 1 55 GLY 55 70 70 GLY GLY B . n B 1 56 THR 56 71 71 THR THR B . n B 1 57 ALA 57 72 72 ALA ALA B . n B 1 58 LEU 58 73 73 LEU LEU B . n B 1 59 GLY 59 74 74 GLY GLY B . n B 1 60 TRP 60 75 75 TRP TRP B . n B 1 61 THR 61 76 76 THR THR B . n B 1 62 VAL 62 77 77 VAL VAL B . n B 1 63 ALA 63 78 78 ALA ALA B . n B 1 64 TRP 64 79 79 TRP TRP B . n B 1 65 LYS 65 80 80 LYS LYS B . n B 1 66 ASN 66 81 81 ASN ASN B . n B 1 67 ASN 67 82 82 ASN ASN B . n B 1 68 TYR 68 83 83 TYR TYR B . n B 1 69 ARG 69 84 84 ARG ARG B . n B 1 70 ASN 70 85 85 ASN ASN B . n B 1 71 ALA 71 86 86 ALA ALA B . n B 1 72 HIS 72 87 87 HIS HIS B . n B 1 73 SER 73 88 88 SER SER B . n B 1 74 ALA 74 89 89 ALA ALA B . n B 1 75 THR 75 90 90 THR THR B . n B 1 76 THR 76 91 91 THR THR B . n B 1 77 TRP 77 92 92 TRP TRP B . n B 1 78 SER 78 93 93 SER SER B . n B 1 79 GLY 79 94 94 GLY GLY B . n B 1 80 GLN 80 95 95 GLN GLN B . n B 1 81 TYR 81 96 96 TYR TYR B . n B 1 82 VAL 82 97 97 VAL VAL B . n B 1 83 GLY 83 98 98 GLY GLY B . n B 1 84 GLY 84 99 99 GLY GLY B . n B 1 85 ALA 85 100 100 ALA ALA B . n B 1 86 GLU 86 101 101 GLU GLU B . n B 1 87 ALA 87 102 102 ALA ALA B . n B 1 88 ARG 88 103 103 ARG ARG B . n B 1 89 ILE 89 104 104 ILE ILE B . n B 1 90 ASN 90 105 105 ASN ASN B . n B 1 91 THR 91 106 106 THR THR B . n B 1 92 GLN 92 107 107 GLN GLN B . n B 1 93 TRP 93 108 108 TRP TRP B . n B 1 94 LEU 94 109 109 LEU LEU B . n B 1 95 LEU 95 110 110 LEU LEU B . n B 1 96 THR 96 111 111 THR THR B . n B 1 97 SER 97 112 112 SER SER B . n B 1 98 GLY 98 113 113 GLY GLY B . n B 1 99 THR 99 114 114 THR THR B . n B 1 100 THR 100 115 115 THR THR B . n B 1 101 GLU 101 116 116 GLU GLU B . n B 1 102 ALA 102 117 117 ALA ALA B . n B 1 103 ASN 103 118 118 ASN ASN B . n B 1 104 ALA 104 119 119 ALA ALA B . n B 1 105 TRP 105 120 120 TRP TRP B . n B 1 106 LYS 106 121 121 LYS LYS B . n B 1 107 SER 107 122 122 SER SER B . n B 1 108 THR 108 123 123 THR THR B . n B 1 109 LEU 109 124 124 LEU LEU B . n B 1 110 VAL 110 125 125 VAL VAL B . n B 1 111 GLY 111 126 126 GLY GLY B . n B 1 112 HIS 112 127 127 HIS HIS B . n B 1 113 ASP 113 128 128 ASP ALA B . n B 1 114 THR 114 129 129 THR THR B . n B 1 115 PHE 115 130 130 PHE PHE B . n B 1 116 THR 116 131 131 THR THR B . n B 1 117 LYS 117 132 132 LYS LYS B . n B 1 118 VAL 118 133 133 VAL VAL B . n B 1 119 LYS 119 134 134 LYS LYS B . n C 1 1 GLY 1 16 16 GLY GLY C . n C 1 2 ILE 2 17 17 ILE ILE C . n C 1 3 THR 3 18 18 THR THR C . n C 1 4 GLY 4 19 19 GLY GLY C . n C 1 5 THR 5 20 20 THR THR C . n C 1 6 TRP 6 21 21 TRP TRP C . n C 1 7 TYR 7 22 22 TYR TYR C . n C 1 8 ASN 8 23 23 ASN ASN C . n C 1 9 GLN 9 24 24 GLN GLN C . n C 1 10 LEU 10 25 25 LEU LEU C . n C 1 11 GLY 11 26 26 GLY GLY C . n C 1 12 SER 12 27 27 SER SER C . n C 1 13 THR 13 28 28 THR THR C . n C 1 14 PHE 14 29 29 PHE PHE C . n C 1 15 ILE 15 30 30 ILE ILE C . n C 1 16 VAL 16 31 31 VAL VAL C . n C 1 17 THR 17 32 32 THR THR C . n C 1 18 ALA 18 33 33 ALA ALA C . n C 1 19 GLY 19 34 34 GLY GLY C . n C 1 20 ALA 20 35 35 ALA ALA C . n C 1 21 ASP 21 36 36 ASP ASP C . n C 1 22 GLY 22 37 37 GLY GLY C . n C 1 23 ALA 23 38 38 ALA ALA C . n C 1 24 LEU 24 39 39 LEU LEU C . n C 1 25 THR 25 40 40 THR THR C . n C 1 26 GLY 26 41 41 GLY GLY C . n C 1 27 THR 27 42 42 THR THR C . n C 1 28 TYR 28 43 43 TYR TYR C . n C 1 29 GLU 29 44 44 GLU GLU C . n C 1 30 SER 30 45 45 SER ALA C . n C 1 31 ALA 31 46 46 ALA ALA C . n C 1 32 VAL 32 47 47 VAL VAL C . n C 1 33 GLY 33 48 48 GLY GLY C . n C 1 34 ASN 34 49 49 ASN ASN C . n C 1 35 ALA 35 50 50 ALA ALA C . n C 1 36 GLU 36 51 51 GLU GLU C . n C 1 37 SER 37 52 52 SER SER C . n C 1 38 ARG 38 53 53 ARG ARG C . n C 1 39 TYR 39 54 54 TYR TYR C . n C 1 40 VAL 40 55 55 VAL VAL C . n C 1 41 LEU 41 56 56 LEU LEU C . n C 1 42 THR 42 57 57 THR THR C . n C 1 43 GLY 43 58 58 GLY GLY C . n C 1 44 ARG 44 59 59 ARG ARG C . n C 1 45 TYR 45 60 60 TYR TYR C . n C 1 46 ASP 46 61 61 ASP ASP C . n C 1 47 SER 47 62 62 SER SER C . n C 1 48 ALA 48 63 63 ALA ALA C . n C 1 49 PRO 49 64 64 PRO PRO C . n C 1 50 ALA 50 65 65 ALA ALA C . n C 1 51 THR 51 66 66 THR THR C . n C 1 52 ASP 52 67 67 ASP ASP C . n C 1 53 GLY 53 68 68 GLY GLY C . n C 1 54 SER 54 69 69 SER SER C . n C 1 55 GLY 55 70 70 GLY GLY C . n C 1 56 THR 56 71 71 THR THR C . n C 1 57 ALA 57 72 72 ALA ALA C . n C 1 58 LEU 58 73 73 LEU LEU C . n C 1 59 GLY 59 74 74 GLY GLY C . n C 1 60 TRP 60 75 75 TRP TRP C . n C 1 61 THR 61 76 76 THR THR C . n C 1 62 VAL 62 77 77 VAL VAL C . n C 1 63 ALA 63 78 78 ALA ALA C . n C 1 64 TRP 64 79 79 TRP TRP C . n C 1 65 LYS 65 80 80 LYS LYS C . n C 1 66 ASN 66 81 81 ASN ASN C . n C 1 67 ASN 67 82 82 ASN ASN C . n C 1 68 TYR 68 83 83 TYR TYR C . n C 1 69 ARG 69 84 84 ARG ARG C . n C 1 70 ASN 70 85 85 ASN ASN C . n C 1 71 ALA 71 86 86 ALA ALA C . n C 1 72 HIS 72 87 87 HIS HIS C . n C 1 73 SER 73 88 88 SER SER C . n C 1 74 ALA 74 89 89 ALA ALA C . n C 1 75 THR 75 90 90 THR THR C . n C 1 76 THR 76 91 91 THR THR C . n C 1 77 TRP 77 92 92 TRP TRP C . n C 1 78 SER 78 93 93 SER SER C . n C 1 79 GLY 79 94 94 GLY GLY C . n C 1 80 GLN 80 95 95 GLN GLN C . n C 1 81 TYR 81 96 96 TYR TYR C . n C 1 82 VAL 82 97 97 VAL VAL C . n C 1 83 GLY 83 98 98 GLY GLY C . n C 1 84 GLY 84 99 99 GLY GLY C . n C 1 85 ALA 85 100 100 ALA ALA C . n C 1 86 GLU 86 101 101 GLU GLU C . n C 1 87 ALA 87 102 102 ALA ALA C . n C 1 88 ARG 88 103 103 ARG ARG C . n C 1 89 ILE 89 104 104 ILE ILE C . n C 1 90 ASN 90 105 105 ASN ASN C . n C 1 91 THR 91 106 106 THR THR C . n C 1 92 GLN 92 107 107 GLN GLN C . n C 1 93 TRP 93 108 108 TRP TRP C . n C 1 94 LEU 94 109 109 LEU LEU C . n C 1 95 LEU 95 110 110 LEU LEU C . n C 1 96 THR 96 111 111 THR THR C . n C 1 97 SER 97 112 112 SER SER C . n C 1 98 GLY 98 113 113 GLY GLY C . n C 1 99 THR 99 114 114 THR THR C . n C 1 100 THR 100 115 115 THR THR C . n C 1 101 GLU 101 116 116 GLU GLU C . n C 1 102 ALA 102 117 117 ALA ALA C . n C 1 103 ASN 103 118 118 ASN ASN C . n C 1 104 ALA 104 119 119 ALA ALA C . n C 1 105 TRP 105 120 120 TRP TRP C . n C 1 106 LYS 106 121 121 LYS LYS C . n C 1 107 SER 107 122 122 SER SER C . n C 1 108 THR 108 123 123 THR THR C . n C 1 109 LEU 109 124 124 LEU LEU C . n C 1 110 VAL 110 125 125 VAL VAL C . n C 1 111 GLY 111 126 126 GLY GLY C . n C 1 112 HIS 112 127 127 HIS HIS C . n C 1 113 ASP 113 128 128 ASP ALA C . n C 1 114 THR 114 129 129 THR THR C . n C 1 115 PHE 115 130 130 PHE PHE C . n C 1 116 THR 116 131 131 THR THR C . n C 1 117 LYS 117 132 132 LYS LYS C . n C 1 118 VAL 118 133 133 VAL VAL C . n C 1 119 LYS 119 134 134 LYS LYS C . n D 1 1 GLY 1 16 16 GLY GLY D . n D 1 2 ILE 2 17 17 ILE ILE D . n D 1 3 THR 3 18 18 THR THR D . n D 1 4 GLY 4 19 19 GLY GLY D . n D 1 5 THR 5 20 20 THR THR D . n D 1 6 TRP 6 21 21 TRP TRP D . n D 1 7 TYR 7 22 22 TYR TYR D . n D 1 8 ASN 8 23 23 ASN ASN D . n D 1 9 GLN 9 24 24 GLN GLN D . n D 1 10 LEU 10 25 25 LEU LEU D . n D 1 11 GLY 11 26 26 GLY GLY D . n D 1 12 SER 12 27 27 SER SER D . n D 1 13 THR 13 28 28 THR THR D . n D 1 14 PHE 14 29 29 PHE PHE D . n D 1 15 ILE 15 30 30 ILE ILE D . n D 1 16 VAL 16 31 31 VAL VAL D . n D 1 17 THR 17 32 32 THR THR D . n D 1 18 ALA 18 33 33 ALA ALA D . n D 1 19 GLY 19 34 34 GLY GLY D . n D 1 20 ALA 20 35 35 ALA ALA D . n D 1 21 ASP 21 36 36 ASP ASP D . n D 1 22 GLY 22 37 37 GLY GLY D . n D 1 23 ALA 23 38 38 ALA ALA D . n D 1 24 LEU 24 39 39 LEU LEU D . n D 1 25 THR 25 40 40 THR THR D . n D 1 26 GLY 26 41 41 GLY GLY D . n D 1 27 THR 27 42 42 THR THR D . n D 1 28 TYR 28 43 43 TYR TYR D . n D 1 29 GLU 29 44 44 GLU GLU D . n D 1 30 SER 30 45 45 SER ALA D . n D 1 31 ALA 31 46 46 ALA ALA D . n D 1 32 VAL 32 47 47 VAL VAL D . n D 1 33 GLY 33 48 48 GLY GLY D . n D 1 34 ASN 34 49 49 ASN ASN D . n D 1 35 ALA 35 50 50 ALA ALA D . n D 1 36 GLU 36 51 51 GLU GLU D . n D 1 37 SER 37 52 52 SER SER D . n D 1 38 ARG 38 53 53 ARG ARG D . n D 1 39 TYR 39 54 54 TYR TYR D . n D 1 40 VAL 40 55 55 VAL VAL D . n D 1 41 LEU 41 56 56 LEU LEU D . n D 1 42 THR 42 57 57 THR THR D . n D 1 43 GLY 43 58 58 GLY GLY D . n D 1 44 ARG 44 59 59 ARG ARG D . n D 1 45 TYR 45 60 60 TYR TYR D . n D 1 46 ASP 46 61 61 ASP ASP D . n D 1 47 SER 47 62 62 SER SER D . n D 1 48 ALA 48 63 63 ALA ALA D . n D 1 49 PRO 49 64 64 PRO PRO D . n D 1 50 ALA 50 65 65 ALA ALA D . n D 1 51 THR 51 66 66 THR THR D . n D 1 52 ASP 52 67 67 ASP ASP D . n D 1 53 GLY 53 68 68 GLY GLY D . n D 1 54 SER 54 69 69 SER SER D . n D 1 55 GLY 55 70 70 GLY GLY D . n D 1 56 THR 56 71 71 THR THR D . n D 1 57 ALA 57 72 72 ALA ALA D . n D 1 58 LEU 58 73 73 LEU LEU D . n D 1 59 GLY 59 74 74 GLY GLY D . n D 1 60 TRP 60 75 75 TRP TRP D . n D 1 61 THR 61 76 76 THR THR D . n D 1 62 VAL 62 77 77 VAL VAL D . n D 1 63 ALA 63 78 78 ALA ALA D . n D 1 64 TRP 64 79 79 TRP TRP D . n D 1 65 LYS 65 80 80 LYS LYS D . n D 1 66 ASN 66 81 81 ASN ASN D . n D 1 67 ASN 67 82 82 ASN ASN D . n D 1 68 TYR 68 83 83 TYR TYR D . n D 1 69 ARG 69 84 84 ARG ARG D . n D 1 70 ASN 70 85 85 ASN ASN D . n D 1 71 ALA 71 86 86 ALA ALA D . n D 1 72 HIS 72 87 87 HIS HIS D . n D 1 73 SER 73 88 88 SER SER D . n D 1 74 ALA 74 89 89 ALA ALA D . n D 1 75 THR 75 90 90 THR THR D . n D 1 76 THR 76 91 91 THR THR D . n D 1 77 TRP 77 92 92 TRP TRP D . n D 1 78 SER 78 93 93 SER SER D . n D 1 79 GLY 79 94 94 GLY GLY D . n D 1 80 GLN 80 95 95 GLN GLN D . n D 1 81 TYR 81 96 96 TYR TYR D . n D 1 82 VAL 82 97 97 VAL VAL D . n D 1 83 GLY 83 98 98 GLY GLY D . n D 1 84 GLY 84 99 99 GLY GLY D . n D 1 85 ALA 85 100 100 ALA ALA D . n D 1 86 GLU 86 101 101 GLU GLU D . n D 1 87 ALA 87 102 102 ALA ALA D . n D 1 88 ARG 88 103 103 ARG ARG D . n D 1 89 ILE 89 104 104 ILE ILE D . n D 1 90 ASN 90 105 105 ASN ASN D . n D 1 91 THR 91 106 106 THR THR D . n D 1 92 GLN 92 107 107 GLN GLN D . n D 1 93 TRP 93 108 108 TRP TRP D . n D 1 94 LEU 94 109 109 LEU LEU D . n D 1 95 LEU 95 110 110 LEU LEU D . n D 1 96 THR 96 111 111 THR THR D . n D 1 97 SER 97 112 112 SER SER D . n D 1 98 GLY 98 113 113 GLY GLY D . n D 1 99 THR 99 114 114 THR THR D . n D 1 100 THR 100 115 115 THR THR D . n D 1 101 GLU 101 116 116 GLU GLU D . n D 1 102 ALA 102 117 117 ALA ALA D . n D 1 103 ASN 103 118 118 ASN ASN D . n D 1 104 ALA 104 119 119 ALA ALA D . n D 1 105 TRP 105 120 120 TRP TRP D . n D 1 106 LYS 106 121 121 LYS LYS D . n D 1 107 SER 107 122 122 SER SER D . n D 1 108 THR 108 123 123 THR THR D . n D 1 109 LEU 109 124 124 LEU LEU D . n D 1 110 VAL 110 125 125 VAL VAL D . n D 1 111 GLY 111 126 126 GLY GLY D . n D 1 112 HIS 112 127 127 HIS HIS D . n D 1 113 ASP 113 128 128 ASP ALA D . n D 1 114 THR 114 129 129 THR THR D . n D 1 115 PHE 115 130 130 PHE PHE D . n D 1 116 THR 116 131 131 THR THR D . n D 1 117 LYS 117 132 132 LYS LYS D . n D 1 118 VAL 118 133 133 VAL VAL D . n D 1 119 LYS 119 134 134 LYS LYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BTN 1 5100 5100 BTN BTN A . F 2 BTN 1 5100 5100 BTN BTN B . G 2 BTN 1 5100 5100 BTN BTN C . H 2 BTN 1 5100 5100 BTN BTN D . I 3 HOH 1 5201 10 HOH HOH A . I 3 HOH 2 5202 1 HOH HOH A . I 3 HOH 3 5203 4 HOH HOH A . J 3 HOH 1 5201 9 HOH HOH B . J 3 HOH 2 5202 2 HOH HOH B . J 3 HOH 3 5203 5 HOH HOH B . K 3 HOH 1 5201 11 HOH HOH C . K 3 HOH 2 5202 3 HOH HOH C . K 3 HOH 3 5203 7 HOH HOH C . L 3 HOH 1 5201 8 HOH HOH D . L 3 HOH 2 5202 6 HOH HOH D . L 3 HOH 3 5203 12 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 45 ? OG ? A SER 30 OG 2 1 Y 1 A ASP 128 ? CG ? A ASP 113 CG 3 1 Y 1 A ASP 128 ? OD1 ? A ASP 113 OD1 4 1 Y 1 A ASP 128 ? OD2 ? A ASP 113 OD2 5 1 Y 1 B SER 45 ? OG ? B SER 30 OG 6 1 Y 1 B ASP 128 ? CG ? B ASP 113 CG 7 1 Y 1 B ASP 128 ? OD1 ? B ASP 113 OD1 8 1 Y 1 B ASP 128 ? OD2 ? B ASP 113 OD2 9 1 Y 1 C SER 45 ? OG ? C SER 30 OG 10 1 Y 1 C ASP 128 ? CG ? C ASP 113 CG 11 1 Y 1 C ASP 128 ? OD1 ? C ASP 113 OD1 12 1 Y 1 C ASP 128 ? OD2 ? C ASP 113 OD2 13 1 Y 1 D SER 45 ? OG ? D SER 30 OG 14 1 Y 1 D ASP 128 ? CG ? D ASP 113 CG 15 1 Y 1 D ASP 128 ? OD1 ? D ASP 113 OD1 16 1 Y 1 D ASP 128 ? OD2 ? D ASP 113 OD2 # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.14_3260: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6J6J _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6J6J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6J6J _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.015 ? 3704 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 2.268 ? 5068 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 18.452 ? 2036 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.148 ? 568 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.011 ? 632 ? f_plane_restr ? ? # _struct.entry_id 6J6J _struct.title 'Biotin-bound streptavidin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6J6J _struct_keywords.text 'streptavidin, CYTOSOLIC PROTEIN' _struct_keywords.pdbx_keywords 'CYTOSOLIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAV_STRAV _struct_ref.pdbx_db_accession P22629 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQ YVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK ; _struct_ref.pdbx_align_begin 40 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6J6J A 1 ? 119 ? P22629 40 ? 158 ? 16 134 2 1 6J6J B 1 ? 119 ? P22629 40 ? 158 ? 16 134 3 1 6J6J C 1 ? 119 ? P22629 40 ? 158 ? 16 134 4 1 6J6J D 1 ? 119 ? P22629 40 ? 158 ? 16 134 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11290 ? 1 MORE -47 ? 1 'SSA (A^2)' 19260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA4 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 4 ? TRP A 6 ? GLY A 19 TRP A 21 AA1 2 THR A 13 ? ALA A 18 ? THR A 28 ALA A 33 AA1 3 ALA A 23 ? GLU A 29 ? ALA A 38 GLU A 44 AA1 4 TYR A 39 ? TYR A 45 ? TYR A 54 TYR A 60 AA1 5 THR A 56 ? LYS A 65 ? THR A 71 LYS A 80 AA1 6 ASN A 70 ? VAL A 82 ? ASN A 85 VAL A 97 AA1 7 ARG A 88 ? SER A 97 ? ARG A 103 SER A 112 AA1 8 THR A 108 ? THR A 116 ? THR A 123 THR A 131 AA2 1 GLY B 4 ? TRP B 6 ? GLY B 19 TRP B 21 AA2 2 THR B 13 ? ALA B 18 ? THR B 28 ALA B 33 AA2 3 ALA B 23 ? GLU B 29 ? ALA B 38 GLU B 44 AA2 4 TYR B 39 ? TYR B 45 ? TYR B 54 TYR B 60 AA2 5 THR B 56 ? LYS B 65 ? THR B 71 LYS B 80 AA2 6 ASN B 70 ? VAL B 82 ? ASN B 85 VAL B 97 AA2 7 ARG B 88 ? SER B 97 ? ARG B 103 SER B 112 AA2 8 THR B 108 ? THR B 116 ? THR B 123 THR B 131 AA3 1 GLY C 4 ? TRP C 6 ? GLY C 19 TRP C 21 AA3 2 THR C 13 ? ALA C 18 ? THR C 28 ALA C 33 AA3 3 ALA C 23 ? GLU C 29 ? ALA C 38 GLU C 44 AA3 4 TYR C 39 ? TYR C 45 ? TYR C 54 TYR C 60 AA3 5 THR C 56 ? LYS C 65 ? THR C 71 LYS C 80 AA3 6 ASN C 70 ? VAL C 82 ? ASN C 85 VAL C 97 AA3 7 ARG C 88 ? SER C 97 ? ARG C 103 SER C 112 AA3 8 THR C 108 ? THR C 116 ? THR C 123 THR C 131 AA4 1 GLY D 4 ? TRP D 6 ? GLY D 19 TRP D 21 AA4 2 THR D 13 ? ALA D 18 ? THR D 28 ALA D 33 AA4 3 ALA D 23 ? GLU D 29 ? ALA D 38 GLU D 44 AA4 4 TYR D 39 ? TYR D 45 ? TYR D 54 TYR D 60 AA4 5 THR D 56 ? LYS D 65 ? THR D 71 LYS D 80 AA4 6 ASN D 70 ? VAL D 82 ? ASN D 85 VAL D 97 AA4 7 ARG D 88 ? SER D 97 ? ARG D 103 SER D 112 AA4 8 THR D 108 ? THR D 116 ? THR D 123 THR D 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 4 ? N GLY A 19 O VAL A 16 ? O VAL A 31 AA1 2 3 N THR A 17 ? N THR A 32 O THR A 25 ? O THR A 40 AA1 3 4 N TYR A 28 ? N TYR A 43 O TYR A 39 ? O TYR A 54 AA1 4 5 N THR A 42 ? N THR A 57 O THR A 61 ? O THR A 76 AA1 5 6 N VAL A 62 ? N VAL A 77 O THR A 75 ? O THR A 90 AA1 6 7 N ALA A 74 ? N ALA A 89 O THR A 96 ? O THR A 111 AA1 7 8 N ILE A 89 ? N ILE A 104 O PHE A 115 ? O PHE A 130 AA2 1 2 N GLY B 4 ? N GLY B 19 O VAL B 16 ? O VAL B 31 AA2 2 3 N THR B 17 ? N THR B 32 O THR B 25 ? O THR B 40 AA2 3 4 N TYR B 28 ? N TYR B 43 O TYR B 39 ? O TYR B 54 AA2 4 5 N THR B 42 ? N THR B 57 O THR B 61 ? O THR B 76 AA2 5 6 N VAL B 62 ? N VAL B 77 O THR B 75 ? O THR B 90 AA2 6 7 N ALA B 74 ? N ALA B 89 O THR B 96 ? O THR B 111 AA2 7 8 N ILE B 89 ? N ILE B 104 O PHE B 115 ? O PHE B 130 AA3 1 2 N GLY C 4 ? N GLY C 19 O VAL C 16 ? O VAL C 31 AA3 2 3 N THR C 17 ? N THR C 32 O THR C 25 ? O THR C 40 AA3 3 4 N TYR C 28 ? N TYR C 43 O TYR C 39 ? O TYR C 54 AA3 4 5 N THR C 42 ? N THR C 57 O THR C 61 ? O THR C 76 AA3 5 6 N VAL C 62 ? N VAL C 77 O THR C 75 ? O THR C 90 AA3 6 7 N ALA C 74 ? N ALA C 89 O THR C 96 ? O THR C 111 AA3 7 8 N ILE C 89 ? N ILE C 104 O PHE C 115 ? O PHE C 130 AA4 1 2 N GLY D 4 ? N GLY D 19 O VAL D 16 ? O VAL D 31 AA4 2 3 N THR D 17 ? N THR D 32 O THR D 25 ? O THR D 40 AA4 3 4 N TYR D 28 ? N TYR D 43 O TYR D 39 ? O TYR D 54 AA4 4 5 N THR D 42 ? N THR D 57 O THR D 61 ? O THR D 76 AA4 5 6 N VAL D 62 ? N VAL D 77 O THR D 75 ? O THR D 90 AA4 6 7 N ALA D 74 ? N ALA D 89 O THR D 96 ? O THR D 111 AA4 7 8 N ILE D 89 ? N ILE D 104 O PHE D 115 ? O PHE D 130 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BTN 5100 ? 9 'binding site for residue BTN A 5100' AC2 Software B BTN 5100 ? 9 'binding site for residue BTN B 5100' AC3 Software C BTN 5100 ? 9 'binding site for residue BTN C 5100' AC4 Software D BTN 5100 ? 9 'binding site for residue BTN D 5100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 12 ? SER A 27 . ? 1_555 ? 2 AC1 9 TYR A 28 ? TYR A 43 . ? 1_555 ? 3 AC1 9 ASN A 34 ? ASN A 49 . ? 1_555 ? 4 AC1 9 TRP A 64 ? TRP A 79 . ? 1_555 ? 5 AC1 9 ALA A 71 ? ALA A 86 . ? 1_555 ? 6 AC1 9 SER A 73 ? SER A 88 . ? 1_555 ? 7 AC1 9 TRP A 77 ? TRP A 92 . ? 1_555 ? 8 AC1 9 LEU A 95 ? LEU A 110 . ? 1_555 ? 9 AC1 9 HOH I . ? HOH A 5201 . ? 1_555 ? 10 AC2 9 SER B 12 ? SER B 27 . ? 1_555 ? 11 AC2 9 TYR B 28 ? TYR B 43 . ? 1_555 ? 12 AC2 9 ASN B 34 ? ASN B 49 . ? 1_555 ? 13 AC2 9 TRP B 64 ? TRP B 79 . ? 1_555 ? 14 AC2 9 ALA B 71 ? ALA B 86 . ? 1_555 ? 15 AC2 9 SER B 73 ? SER B 88 . ? 1_555 ? 16 AC2 9 TRP B 77 ? TRP B 92 . ? 1_555 ? 17 AC2 9 LEU B 95 ? LEU B 110 . ? 1_555 ? 18 AC2 9 HOH J . ? HOH B 5201 . ? 1_555 ? 19 AC3 9 SER C 12 ? SER C 27 . ? 1_555 ? 20 AC3 9 TYR C 28 ? TYR C 43 . ? 1_555 ? 21 AC3 9 ASN C 34 ? ASN C 49 . ? 1_555 ? 22 AC3 9 TRP C 64 ? TRP C 79 . ? 1_555 ? 23 AC3 9 ALA C 71 ? ALA C 86 . ? 1_555 ? 24 AC3 9 SER C 73 ? SER C 88 . ? 1_555 ? 25 AC3 9 TRP C 77 ? TRP C 92 . ? 1_555 ? 26 AC3 9 LEU C 95 ? LEU C 110 . ? 1_555 ? 27 AC3 9 HOH K . ? HOH C 5201 . ? 1_555 ? 28 AC4 9 SER D 12 ? SER D 27 . ? 1_555 ? 29 AC4 9 TYR D 28 ? TYR D 43 . ? 1_555 ? 30 AC4 9 ASN D 34 ? ASN D 49 . ? 1_555 ? 31 AC4 9 TRP D 64 ? TRP D 79 . ? 1_555 ? 32 AC4 9 ALA D 71 ? ALA D 86 . ? 1_555 ? 33 AC4 9 SER D 73 ? SER D 88 . ? 1_555 ? 34 AC4 9 TRP D 77 ? TRP D 92 . ? 1_555 ? 35 AC4 9 LEU D 95 ? LEU D 110 . ? 1_555 ? 36 AC4 9 HOH L . ? HOH D 5201 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 52 ? ? 178.78 -177.64 2 1 SER A 62 ? ? -119.37 78.23 3 1 ALA A 63 ? ? -165.94 76.19 4 1 ALA A 65 ? ? 60.76 71.73 5 1 TYR A 83 ? ? -90.30 -61.11 6 1 ASN A 118 ? ? -93.79 49.43 7 1 SER B 52 ? ? 178.81 -177.59 8 1 SER B 62 ? ? -119.49 78.29 9 1 ALA B 63 ? ? -166.00 76.18 10 1 ALA B 65 ? ? 60.97 71.55 11 1 TYR B 83 ? ? -90.25 -61.20 12 1 ASN B 118 ? ? -93.91 49.44 13 1 SER C 52 ? ? 178.73 -177.62 14 1 SER C 62 ? ? -119.36 78.26 15 1 ALA C 63 ? ? -165.99 76.17 16 1 ALA C 65 ? ? 60.88 71.65 17 1 TYR C 83 ? ? -90.22 -61.06 18 1 ASN C 118 ? ? -93.83 49.43 19 1 SER D 52 ? ? 178.75 -177.62 20 1 SER D 62 ? ? -119.38 78.30 21 1 ALA D 63 ? ? -166.07 76.17 22 1 ALA D 65 ? ? 60.96 71.67 23 1 TYR D 83 ? ? -90.31 -61.10 24 1 ASN D 118 ? ? -93.71 49.34 # _em_3d_fitting.entry_id 6J6J _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6J6J _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 45686 _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Streptavidin with biotin' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6J6J _em_image_scans.id 1 _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 32 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 5.0 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-32 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6J6J _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 0.01 _em_imaging.nominal_defocus_max -800 _em_imaging.nominal_defocus_min -800 _em_imaging.nominal_magnification 215000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 285 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6J6J _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6J6J _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6J6J _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry D2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BTN C11 C N N 74 BTN O11 O N N 75 BTN O12 O N N 76 BTN C10 C N N 77 BTN C9 C N N 78 BTN C8 C N N 79 BTN C7 C N N 80 BTN C2 C N S 81 BTN S1 S N N 82 BTN C6 C N N 83 BTN C5 C N R 84 BTN N1 N N N 85 BTN C3 C N N 86 BTN O3 O N N 87 BTN N2 N N N 88 BTN C4 C N S 89 BTN HO2 H N N 90 BTN H101 H N N 91 BTN H102 H N N 92 BTN H91 H N N 93 BTN H92 H N N 94 BTN H81 H N N 95 BTN H82 H N N 96 BTN H71 H N N 97 BTN H72 H N N 98 BTN H2 H N N 99 BTN H61 H N N 100 BTN H62 H N N 101 BTN H5 H N N 102 BTN HN1 H N N 103 BTN HN2 H N N 104 BTN H4 H N N 105 GLN N N N N 106 GLN CA C N S 107 GLN C C N N 108 GLN O O N N 109 GLN CB C N N 110 GLN CG C N N 111 GLN CD C N N 112 GLN OE1 O N N 113 GLN NE2 N N N 114 GLN OXT O N N 115 GLN H H N N 116 GLN H2 H N N 117 GLN HA H N N 118 GLN HB2 H N N 119 GLN HB3 H N N 120 GLN HG2 H N N 121 GLN HG3 H N N 122 GLN HE21 H N N 123 GLN HE22 H N N 124 GLN HXT H N N 125 GLU N N N N 126 GLU CA C N S 127 GLU C C N N 128 GLU O O N N 129 GLU CB C N N 130 GLU CG C N N 131 GLU CD C N N 132 GLU OE1 O N N 133 GLU OE2 O N N 134 GLU OXT O N N 135 GLU H H N N 136 GLU H2 H N N 137 GLU HA H N N 138 GLU HB2 H N N 139 GLU HB3 H N N 140 GLU HG2 H N N 141 GLU HG3 H N N 142 GLU HE2 H N N 143 GLU HXT H N N 144 GLY N N N N 145 GLY CA C N N 146 GLY C C N N 147 GLY O O N N 148 GLY OXT O N N 149 GLY H H N N 150 GLY H2 H N N 151 GLY HA2 H N N 152 GLY HA3 H N N 153 GLY HXT H N N 154 HIS N N N N 155 HIS CA C N S 156 HIS C C N N 157 HIS O O N N 158 HIS CB C N N 159 HIS CG C Y N 160 HIS ND1 N Y N 161 HIS CD2 C Y N 162 HIS CE1 C Y N 163 HIS NE2 N Y N 164 HIS OXT O N N 165 HIS H H N N 166 HIS H2 H N N 167 HIS HA H N N 168 HIS HB2 H N N 169 HIS HB3 H N N 170 HIS HD1 H N N 171 HIS HD2 H N N 172 HIS HE1 H N N 173 HIS HE2 H N N 174 HIS HXT H N N 175 HOH O O N N 176 HOH H1 H N N 177 HOH H2 H N N 178 ILE N N N N 179 ILE CA C N S 180 ILE C C N N 181 ILE O O N N 182 ILE CB C N S 183 ILE CG1 C N N 184 ILE CG2 C N N 185 ILE CD1 C N N 186 ILE OXT O N N 187 ILE H H N N 188 ILE H2 H N N 189 ILE HA H N N 190 ILE HB H N N 191 ILE HG12 H N N 192 ILE HG13 H N N 193 ILE HG21 H N N 194 ILE HG22 H N N 195 ILE HG23 H N N 196 ILE HD11 H N N 197 ILE HD12 H N N 198 ILE HD13 H N N 199 ILE HXT H N N 200 LEU N N N N 201 LEU CA C N S 202 LEU C C N N 203 LEU O O N N 204 LEU CB C N N 205 LEU CG C N N 206 LEU CD1 C N N 207 LEU CD2 C N N 208 LEU OXT O N N 209 LEU H H N N 210 LEU H2 H N N 211 LEU HA H N N 212 LEU HB2 H N N 213 LEU HB3 H N N 214 LEU HG H N N 215 LEU HD11 H N N 216 LEU HD12 H N N 217 LEU HD13 H N N 218 LEU HD21 H N N 219 LEU HD22 H N N 220 LEU HD23 H N N 221 LEU HXT H N N 222 LYS N N N N 223 LYS CA C N S 224 LYS C C N N 225 LYS O O N N 226 LYS CB C N N 227 LYS CG C N N 228 LYS CD C N N 229 LYS CE C N N 230 LYS NZ N N N 231 LYS OXT O N N 232 LYS H H N N 233 LYS H2 H N N 234 LYS HA H N N 235 LYS HB2 H N N 236 LYS HB3 H N N 237 LYS HG2 H N N 238 LYS HG3 H N N 239 LYS HD2 H N N 240 LYS HD3 H N N 241 LYS HE2 H N N 242 LYS HE3 H N N 243 LYS HZ1 H N N 244 LYS HZ2 H N N 245 LYS HZ3 H N N 246 LYS HXT H N N 247 PHE N N N N 248 PHE CA C N S 249 PHE C C N N 250 PHE O O N N 251 PHE CB C N N 252 PHE CG C Y N 253 PHE CD1 C Y N 254 PHE CD2 C Y N 255 PHE CE1 C Y N 256 PHE CE2 C Y N 257 PHE CZ C Y N 258 PHE OXT O N N 259 PHE H H N N 260 PHE H2 H N N 261 PHE HA H N N 262 PHE HB2 H N N 263 PHE HB3 H N N 264 PHE HD1 H N N 265 PHE HD2 H N N 266 PHE HE1 H N N 267 PHE HE2 H N N 268 PHE HZ H N N 269 PHE HXT H N N 270 PRO N N N N 271 PRO CA C N S 272 PRO C C N N 273 PRO O O N N 274 PRO CB C N N 275 PRO CG C N N 276 PRO CD C N N 277 PRO OXT O N N 278 PRO H H N N 279 PRO HA H N N 280 PRO HB2 H N N 281 PRO HB3 H N N 282 PRO HG2 H N N 283 PRO HG3 H N N 284 PRO HD2 H N N 285 PRO HD3 H N N 286 PRO HXT H N N 287 SER N N N N 288 SER CA C N S 289 SER C C N N 290 SER O O N N 291 SER CB C N N 292 SER OG O N N 293 SER OXT O N N 294 SER H H N N 295 SER H2 H N N 296 SER HA H N N 297 SER HB2 H N N 298 SER HB3 H N N 299 SER HG H N N 300 SER HXT H N N 301 THR N N N N 302 THR CA C N S 303 THR C C N N 304 THR O O N N 305 THR CB C N R 306 THR OG1 O N N 307 THR CG2 C N N 308 THR OXT O N N 309 THR H H N N 310 THR H2 H N N 311 THR HA H N N 312 THR HB H N N 313 THR HG1 H N N 314 THR HG21 H N N 315 THR HG22 H N N 316 THR HG23 H N N 317 THR HXT H N N 318 TRP N N N N 319 TRP CA C N S 320 TRP C C N N 321 TRP O O N N 322 TRP CB C N N 323 TRP CG C Y N 324 TRP CD1 C Y N 325 TRP CD2 C Y N 326 TRP NE1 N Y N 327 TRP CE2 C Y N 328 TRP CE3 C Y N 329 TRP CZ2 C Y N 330 TRP CZ3 C Y N 331 TRP CH2 C Y N 332 TRP OXT O N N 333 TRP H H N N 334 TRP H2 H N N 335 TRP HA H N N 336 TRP HB2 H N N 337 TRP HB3 H N N 338 TRP HD1 H N N 339 TRP HE1 H N N 340 TRP HE3 H N N 341 TRP HZ2 H N N 342 TRP HZ3 H N N 343 TRP HH2 H N N 344 TRP HXT H N N 345 TYR N N N N 346 TYR CA C N S 347 TYR C C N N 348 TYR O O N N 349 TYR CB C N N 350 TYR CG C Y N 351 TYR CD1 C Y N 352 TYR CD2 C Y N 353 TYR CE1 C Y N 354 TYR CE2 C Y N 355 TYR CZ C Y N 356 TYR OH O N N 357 TYR OXT O N N 358 TYR H H N N 359 TYR H2 H N N 360 TYR HA H N N 361 TYR HB2 H N N 362 TYR HB3 H N N 363 TYR HD1 H N N 364 TYR HD2 H N N 365 TYR HE1 H N N 366 TYR HE2 H N N 367 TYR HH H N N 368 TYR HXT H N N 369 VAL N N N N 370 VAL CA C N S 371 VAL C C N N 372 VAL O O N N 373 VAL CB C N N 374 VAL CG1 C N N 375 VAL CG2 C N N 376 VAL OXT O N N 377 VAL H H N N 378 VAL H2 H N N 379 VAL HA H N N 380 VAL HB H N N 381 VAL HG11 H N N 382 VAL HG12 H N N 383 VAL HG13 H N N 384 VAL HG21 H N N 385 VAL HG22 H N N 386 VAL HG23 H N N 387 VAL HXT H N N 388 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BTN C11 O11 doub N N 70 BTN C11 O12 sing N N 71 BTN C11 C10 sing N N 72 BTN O12 HO2 sing N N 73 BTN C10 C9 sing N N 74 BTN C10 H101 sing N N 75 BTN C10 H102 sing N N 76 BTN C9 C8 sing N N 77 BTN C9 H91 sing N N 78 BTN C9 H92 sing N N 79 BTN C8 C7 sing N N 80 BTN C8 H81 sing N N 81 BTN C8 H82 sing N N 82 BTN C7 C2 sing N N 83 BTN C7 H71 sing N N 84 BTN C7 H72 sing N N 85 BTN C2 S1 sing N N 86 BTN C2 C4 sing N N 87 BTN C2 H2 sing N N 88 BTN S1 C6 sing N N 89 BTN C6 C5 sing N N 90 BTN C6 H61 sing N N 91 BTN C6 H62 sing N N 92 BTN C5 N1 sing N N 93 BTN C5 C4 sing N N 94 BTN C5 H5 sing N N 95 BTN N1 C3 sing N N 96 BTN N1 HN1 sing N N 97 BTN C3 O3 doub N N 98 BTN C3 N2 sing N N 99 BTN N2 C4 sing N N 100 BTN N2 HN2 sing N N 101 BTN C4 H4 sing N N 102 GLN N CA sing N N 103 GLN N H sing N N 104 GLN N H2 sing N N 105 GLN CA C sing N N 106 GLN CA CB sing N N 107 GLN CA HA sing N N 108 GLN C O doub N N 109 GLN C OXT sing N N 110 GLN CB CG sing N N 111 GLN CB HB2 sing N N 112 GLN CB HB3 sing N N 113 GLN CG CD sing N N 114 GLN CG HG2 sing N N 115 GLN CG HG3 sing N N 116 GLN CD OE1 doub N N 117 GLN CD NE2 sing N N 118 GLN NE2 HE21 sing N N 119 GLN NE2 HE22 sing N N 120 GLN OXT HXT sing N N 121 GLU N CA sing N N 122 GLU N H sing N N 123 GLU N H2 sing N N 124 GLU CA C sing N N 125 GLU CA CB sing N N 126 GLU CA HA sing N N 127 GLU C O doub N N 128 GLU C OXT sing N N 129 GLU CB CG sing N N 130 GLU CB HB2 sing N N 131 GLU CB HB3 sing N N 132 GLU CG CD sing N N 133 GLU CG HG2 sing N N 134 GLU CG HG3 sing N N 135 GLU CD OE1 doub N N 136 GLU CD OE2 sing N N 137 GLU OE2 HE2 sing N N 138 GLU OXT HXT sing N N 139 GLY N CA sing N N 140 GLY N H sing N N 141 GLY N H2 sing N N 142 GLY CA C sing N N 143 GLY CA HA2 sing N N 144 GLY CA HA3 sing N N 145 GLY C O doub N N 146 GLY C OXT sing N N 147 GLY OXT HXT sing N N 148 HIS N CA sing N N 149 HIS N H sing N N 150 HIS N H2 sing N N 151 HIS CA C sing N N 152 HIS CA CB sing N N 153 HIS CA HA sing N N 154 HIS C O doub N N 155 HIS C OXT sing N N 156 HIS CB CG sing N N 157 HIS CB HB2 sing N N 158 HIS CB HB3 sing N N 159 HIS CG ND1 sing Y N 160 HIS CG CD2 doub Y N 161 HIS ND1 CE1 doub Y N 162 HIS ND1 HD1 sing N N 163 HIS CD2 NE2 sing Y N 164 HIS CD2 HD2 sing N N 165 HIS CE1 NE2 sing Y N 166 HIS CE1 HE1 sing N N 167 HIS NE2 HE2 sing N N 168 HIS OXT HXT sing N N 169 HOH O H1 sing N N 170 HOH O H2 sing N N 171 ILE N CA sing N N 172 ILE N H sing N N 173 ILE N H2 sing N N 174 ILE CA C sing N N 175 ILE CA CB sing N N 176 ILE CA HA sing N N 177 ILE C O doub N N 178 ILE C OXT sing N N 179 ILE CB CG1 sing N N 180 ILE CB CG2 sing N N 181 ILE CB HB sing N N 182 ILE CG1 CD1 sing N N 183 ILE CG1 HG12 sing N N 184 ILE CG1 HG13 sing N N 185 ILE CG2 HG21 sing N N 186 ILE CG2 HG22 sing N N 187 ILE CG2 HG23 sing N N 188 ILE CD1 HD11 sing N N 189 ILE CD1 HD12 sing N N 190 ILE CD1 HD13 sing N N 191 ILE OXT HXT sing N N 192 LEU N CA sing N N 193 LEU N H sing N N 194 LEU N H2 sing N N 195 LEU CA C sing N N 196 LEU CA CB sing N N 197 LEU CA HA sing N N 198 LEU C O doub N N 199 LEU C OXT sing N N 200 LEU CB CG sing N N 201 LEU CB HB2 sing N N 202 LEU CB HB3 sing N N 203 LEU CG CD1 sing N N 204 LEU CG CD2 sing N N 205 LEU CG HG sing N N 206 LEU CD1 HD11 sing N N 207 LEU CD1 HD12 sing N N 208 LEU CD1 HD13 sing N N 209 LEU CD2 HD21 sing N N 210 LEU CD2 HD22 sing N N 211 LEU CD2 HD23 sing N N 212 LEU OXT HXT sing N N 213 LYS N CA sing N N 214 LYS N H sing N N 215 LYS N H2 sing N N 216 LYS CA C sing N N 217 LYS CA CB sing N N 218 LYS CA HA sing N N 219 LYS C O doub N N 220 LYS C OXT sing N N 221 LYS CB CG sing N N 222 LYS CB HB2 sing N N 223 LYS CB HB3 sing N N 224 LYS CG CD sing N N 225 LYS CG HG2 sing N N 226 LYS CG HG3 sing N N 227 LYS CD CE sing N N 228 LYS CD HD2 sing N N 229 LYS CD HD3 sing N N 230 LYS CE NZ sing N N 231 LYS CE HE2 sing N N 232 LYS CE HE3 sing N N 233 LYS NZ HZ1 sing N N 234 LYS NZ HZ2 sing N N 235 LYS NZ HZ3 sing N N 236 LYS OXT HXT sing N N 237 PHE N CA sing N N 238 PHE N H sing N N 239 PHE N H2 sing N N 240 PHE CA C sing N N 241 PHE CA CB sing N N 242 PHE CA HA sing N N 243 PHE C O doub N N 244 PHE C OXT sing N N 245 PHE CB CG sing N N 246 PHE CB HB2 sing N N 247 PHE CB HB3 sing N N 248 PHE CG CD1 doub Y N 249 PHE CG CD2 sing Y N 250 PHE CD1 CE1 sing Y N 251 PHE CD1 HD1 sing N N 252 PHE CD2 CE2 doub Y N 253 PHE CD2 HD2 sing N N 254 PHE CE1 CZ doub Y N 255 PHE CE1 HE1 sing N N 256 PHE CE2 CZ sing Y N 257 PHE CE2 HE2 sing N N 258 PHE CZ HZ sing N N 259 PHE OXT HXT sing N N 260 PRO N CA sing N N 261 PRO N CD sing N N 262 PRO N H sing N N 263 PRO CA C sing N N 264 PRO CA CB sing N N 265 PRO CA HA sing N N 266 PRO C O doub N N 267 PRO C OXT sing N N 268 PRO CB CG sing N N 269 PRO CB HB2 sing N N 270 PRO CB HB3 sing N N 271 PRO CG CD sing N N 272 PRO CG HG2 sing N N 273 PRO CG HG3 sing N N 274 PRO CD HD2 sing N N 275 PRO CD HD3 sing N N 276 PRO OXT HXT sing N N 277 SER N CA sing N N 278 SER N H sing N N 279 SER N H2 sing N N 280 SER CA C sing N N 281 SER CA CB sing N N 282 SER CA HA sing N N 283 SER C O doub N N 284 SER C OXT sing N N 285 SER CB OG sing N N 286 SER CB HB2 sing N N 287 SER CB HB3 sing N N 288 SER OG HG sing N N 289 SER OXT HXT sing N N 290 THR N CA sing N N 291 THR N H sing N N 292 THR N H2 sing N N 293 THR CA C sing N N 294 THR CA CB sing N N 295 THR CA HA sing N N 296 THR C O doub N N 297 THR C OXT sing N N 298 THR CB OG1 sing N N 299 THR CB CG2 sing N N 300 THR CB HB sing N N 301 THR OG1 HG1 sing N N 302 THR CG2 HG21 sing N N 303 THR CG2 HG22 sing N N 304 THR CG2 HG23 sing N N 305 THR OXT HXT sing N N 306 TRP N CA sing N N 307 TRP N H sing N N 308 TRP N H2 sing N N 309 TRP CA C sing N N 310 TRP CA CB sing N N 311 TRP CA HA sing N N 312 TRP C O doub N N 313 TRP C OXT sing N N 314 TRP CB CG sing N N 315 TRP CB HB2 sing N N 316 TRP CB HB3 sing N N 317 TRP CG CD1 doub Y N 318 TRP CG CD2 sing Y N 319 TRP CD1 NE1 sing Y N 320 TRP CD1 HD1 sing N N 321 TRP CD2 CE2 doub Y N 322 TRP CD2 CE3 sing Y N 323 TRP NE1 CE2 sing Y N 324 TRP NE1 HE1 sing N N 325 TRP CE2 CZ2 sing Y N 326 TRP CE3 CZ3 doub Y N 327 TRP CE3 HE3 sing N N 328 TRP CZ2 CH2 doub Y N 329 TRP CZ2 HZ2 sing N N 330 TRP CZ3 CH2 sing Y N 331 TRP CZ3 HZ3 sing N N 332 TRP CH2 HH2 sing N N 333 TRP OXT HXT sing N N 334 TYR N CA sing N N 335 TYR N H sing N N 336 TYR N H2 sing N N 337 TYR CA C sing N N 338 TYR CA CB sing N N 339 TYR CA HA sing N N 340 TYR C O doub N N 341 TYR C OXT sing N N 342 TYR CB CG sing N N 343 TYR CB HB2 sing N N 344 TYR CB HB3 sing N N 345 TYR CG CD1 doub Y N 346 TYR CG CD2 sing Y N 347 TYR CD1 CE1 sing Y N 348 TYR CD1 HD1 sing N N 349 TYR CD2 CE2 doub Y N 350 TYR CD2 HD2 sing N N 351 TYR CE1 CZ doub Y N 352 TYR CE1 HE1 sing N N 353 TYR CE2 CZ sing Y N 354 TYR CE2 HE2 sing N N 355 TYR CZ OH sing N N 356 TYR OH HH sing N N 357 TYR OXT HXT sing N N 358 VAL N CA sing N N 359 VAL N H sing N N 360 VAL N H2 sing N N 361 VAL CA C sing N N 362 VAL CA CB sing N N 363 VAL CA HA sing N N 364 VAL C O doub N N 365 VAL C OXT sing N N 366 VAL CB CG1 sing N N 367 VAL CB CG2 sing N N 368 VAL CB HB sing N N 369 VAL CG1 HG11 sing N N 370 VAL CG1 HG12 sing N N 371 VAL CG1 HG13 sing N N 372 VAL CG2 HG21 sing N N 373 VAL CG2 HG22 sing N N 374 VAL CG2 HG23 sing N N 375 VAL OXT HXT sing N N 376 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 25 mM '(HOCH2)3CNH2' Tris-HCl 1 2 75 mM NaCl 'Sodium chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.052 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1895 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Streptomyces avidinii' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50.0 _em_image_recording.average_exposure_time 2.56 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1450 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate 'VOLTA PHASE PLATE' _em_imaging_optics.sph_aberration_corrector 'spherical aberration corrector' # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1346980 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 12 CLASSIFICATION ? RELION ? 1 ? ? 13 RECONSTRUCTION ? RELION ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number '2016YFA0501100 to H.W.' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6J6J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_