data_6J6K # _entry.id 6J6K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6J6K pdb_00006j6k 10.2210/pdb6j6k/pdb WWPDB D_1300010553 ? ? EMDB EMD-0690 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-29 2 'Structure model' 1 1 2019-06-19 3 'Structure model' 1 2 2019-11-06 4 'Structure model' 1 3 2020-08-05 5 'Structure model' 1 4 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_sites 4 3 'Structure model' cell 5 4 'Structure model' em_imaging_optics 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' 7 3 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 8 3 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 9 3 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 10 3 'Structure model' '_cell.Z_PDB' 11 4 'Structure model' '_em_imaging_optics.phase_plate' 12 4 'Structure model' '_em_imaging_optics.sph_aberration_corrector' 13 5 'Structure model' '_database_2.pdbx_DOI' 14 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6J6K _pdbx_database_status.recvd_initial_deposition_date 2019-01-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'the same protein with biotin' EMD-0689 'other EM volume' EMDB 'apo-state streptavidin' EMD-0690 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fan, X.' 1 ? 'Wang, J.' 2 ? 'Lei, J.L.' 3 ? 'Wang, H.W.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 2386 _citation.page_last 2386 _citation.title 'Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-10368-w _citation.pdbx_database_id_PubMed 31160591 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fan, X.' 1 ? primary 'Wang, J.' 2 ? primary 'Zhang, X.' 3 ? primary 'Yang, Z.' 4 ? primary 'Zhang, J.C.' 5 ? primary 'Zhao, L.' 6 ? primary 'Peng, H.L.' 7 ? primary 'Lei, J.' 8 ? primary 'Wang, H.W.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Streptavidin _entity.formula_weight 12596.641 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQ YVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK ; _entity_poly.pdbx_seq_one_letter_code_can ;GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQ YVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 THR n 1 4 GLY n 1 5 THR n 1 6 TRP n 1 7 TYR n 1 8 ASN n 1 9 GLN n 1 10 LEU n 1 11 GLY n 1 12 SER n 1 13 THR n 1 14 PHE n 1 15 ILE n 1 16 VAL n 1 17 THR n 1 18 ALA n 1 19 GLY n 1 20 ALA n 1 21 ASP n 1 22 GLY n 1 23 ALA n 1 24 LEU n 1 25 THR n 1 26 GLY n 1 27 THR n 1 28 TYR n 1 29 GLU n 1 30 SER n 1 31 ALA n 1 32 VAL n 1 33 GLY n 1 34 ASN n 1 35 ALA n 1 36 GLU n 1 37 SER n 1 38 ARG n 1 39 TYR n 1 40 VAL n 1 41 LEU n 1 42 THR n 1 43 GLY n 1 44 ARG n 1 45 TYR n 1 46 ASP n 1 47 SER n 1 48 ALA n 1 49 PRO n 1 50 ALA n 1 51 THR n 1 52 ASP n 1 53 GLY n 1 54 SER n 1 55 GLY n 1 56 THR n 1 57 ALA n 1 58 LEU n 1 59 GLY n 1 60 TRP n 1 61 THR n 1 62 VAL n 1 63 ALA n 1 64 TRP n 1 65 LYS n 1 66 ASN n 1 67 ASN n 1 68 TYR n 1 69 ARG n 1 70 ASN n 1 71 ALA n 1 72 HIS n 1 73 SER n 1 74 ALA n 1 75 THR n 1 76 THR n 1 77 TRP n 1 78 SER n 1 79 GLY n 1 80 GLN n 1 81 TYR n 1 82 VAL n 1 83 GLY n 1 84 GLY n 1 85 ALA n 1 86 GLU n 1 87 ALA n 1 88 ARG n 1 89 ILE n 1 90 ASN n 1 91 THR n 1 92 GLN n 1 93 TRP n 1 94 LEU n 1 95 LEU n 1 96 THR n 1 97 SER n 1 98 GLY n 1 99 THR n 1 100 THR n 1 101 GLU n 1 102 ALA n 1 103 ASN n 1 104 ALA n 1 105 TRP n 1 106 LYS n 1 107 SER n 1 108 THR n 1 109 LEU n 1 110 VAL n 1 111 GLY n 1 112 HIS n 1 113 ASP n 1 114 THR n 1 115 PHE n 1 116 THR n 1 117 LYS n 1 118 VAL n 1 119 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 119 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces avidinii' _entity_src_nat.pdbx_ncbi_taxonomy_id 1895 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 16 16 GLY GLY A . n A 1 2 ILE 2 17 17 ILE ILE A . n A 1 3 THR 3 18 18 THR THR A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 THR 5 20 20 THR THR A . n A 1 6 TRP 6 21 21 TRP TRP A . n A 1 7 TYR 7 22 22 TYR TYR A . n A 1 8 ASN 8 23 23 ASN ASN A . n A 1 9 GLN 9 24 24 GLN GLN A . n A 1 10 LEU 10 25 25 LEU LEU A . n A 1 11 GLY 11 26 26 GLY GLY A . n A 1 12 SER 12 27 27 SER SER A . n A 1 13 THR 13 28 28 THR THR A . n A 1 14 PHE 14 29 29 PHE PHE A . n A 1 15 ILE 15 30 30 ILE ILE A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 THR 17 32 32 THR THR A . n A 1 18 ALA 18 33 33 ALA ALA A . n A 1 19 GLY 19 34 34 GLY GLY A . n A 1 20 ALA 20 35 35 ALA ALA A . n A 1 21 ASP 21 36 36 ASP ASP A . n A 1 22 GLY 22 37 37 GLY GLY A . n A 1 23 ALA 23 38 38 ALA ALA A . n A 1 24 LEU 24 39 39 LEU LEU A . n A 1 25 THR 25 40 40 THR THR A . n A 1 26 GLY 26 41 41 GLY GLY A . n A 1 27 THR 27 42 42 THR THR A . n A 1 28 TYR 28 43 43 TYR TYR A . n A 1 29 GLU 29 44 44 GLU GLU A . n A 1 30 SER 30 45 45 SER ALA A . n A 1 31 ALA 31 46 46 ALA ALA A . n A 1 32 VAL 32 47 47 VAL VAL A . n A 1 33 GLY 33 48 48 GLY GLY A . n A 1 34 ASN 34 49 49 ASN ASN A . n A 1 35 ALA 35 50 50 ALA ALA A . n A 1 36 GLU 36 51 51 GLU GLU A . n A 1 37 SER 37 52 52 SER SER A . n A 1 38 ARG 38 53 53 ARG ARG A . n A 1 39 TYR 39 54 54 TYR TYR A . n A 1 40 VAL 40 55 55 VAL VAL A . n A 1 41 LEU 41 56 56 LEU LEU A . n A 1 42 THR 42 57 57 THR THR A . n A 1 43 GLY 43 58 58 GLY GLY A . n A 1 44 ARG 44 59 59 ARG ARG A . n A 1 45 TYR 45 60 60 TYR TYR A . n A 1 46 ASP 46 61 61 ASP ASP A . n A 1 47 SER 47 62 62 SER SER A . n A 1 48 ALA 48 63 63 ALA ALA A . n A 1 49 PRO 49 64 64 PRO PRO A . n A 1 50 ALA 50 65 65 ALA ALA A . n A 1 51 THR 51 66 66 THR THR A . n A 1 52 ASP 52 67 67 ASP ASP A . n A 1 53 GLY 53 68 68 GLY GLY A . n A 1 54 SER 54 69 69 SER SER A . n A 1 55 GLY 55 70 70 GLY GLY A . n A 1 56 THR 56 71 71 THR THR A . n A 1 57 ALA 57 72 72 ALA ALA A . n A 1 58 LEU 58 73 73 LEU LEU A . n A 1 59 GLY 59 74 74 GLY GLY A . n A 1 60 TRP 60 75 75 TRP TRP A . n A 1 61 THR 61 76 76 THR THR A . n A 1 62 VAL 62 77 77 VAL VAL A . n A 1 63 ALA 63 78 78 ALA ALA A . n A 1 64 TRP 64 79 79 TRP TRP A . n A 1 65 LYS 65 80 80 LYS LYS A . n A 1 66 ASN 66 81 81 ASN ASN A . n A 1 67 ASN 67 82 82 ASN ASN A . n A 1 68 TYR 68 83 83 TYR TYR A . n A 1 69 ARG 69 84 84 ARG ARG A . n A 1 70 ASN 70 85 85 ASN ASN A . n A 1 71 ALA 71 86 86 ALA ALA A . n A 1 72 HIS 72 87 87 HIS HIS A . n A 1 73 SER 73 88 88 SER SER A . n A 1 74 ALA 74 89 89 ALA ALA A . n A 1 75 THR 75 90 90 THR THR A . n A 1 76 THR 76 91 91 THR THR A . n A 1 77 TRP 77 92 92 TRP TRP A . n A 1 78 SER 78 93 93 SER SER A . n A 1 79 GLY 79 94 94 GLY GLY A . n A 1 80 GLN 80 95 95 GLN GLN A . n A 1 81 TYR 81 96 96 TYR TYR A . n A 1 82 VAL 82 97 97 VAL VAL A . n A 1 83 GLY 83 98 98 GLY GLY A . n A 1 84 GLY 84 99 99 GLY GLY A . n A 1 85 ALA 85 100 100 ALA ALA A . n A 1 86 GLU 86 101 101 GLU GLU A . n A 1 87 ALA 87 102 102 ALA ALA A . n A 1 88 ARG 88 103 103 ARG ARG A . n A 1 89 ILE 89 104 104 ILE ILE A . n A 1 90 ASN 90 105 105 ASN ASN A . n A 1 91 THR 91 106 106 THR THR A . n A 1 92 GLN 92 107 107 GLN GLN A . n A 1 93 TRP 93 108 108 TRP TRP A . n A 1 94 LEU 94 109 109 LEU LEU A . n A 1 95 LEU 95 110 110 LEU LEU A . n A 1 96 THR 96 111 111 THR THR A . n A 1 97 SER 97 112 112 SER SER A . n A 1 98 GLY 98 113 113 GLY GLY A . n A 1 99 THR 99 114 114 THR THR A . n A 1 100 THR 100 115 115 THR THR A . n A 1 101 GLU 101 116 116 GLU GLU A . n A 1 102 ALA 102 117 117 ALA ALA A . n A 1 103 ASN 103 118 118 ASN ASN A . n A 1 104 ALA 104 119 119 ALA ALA A . n A 1 105 TRP 105 120 120 TRP TRP A . n A 1 106 LYS 106 121 121 LYS LYS A . n A 1 107 SER 107 122 122 SER SER A . n A 1 108 THR 108 123 123 THR THR A . n A 1 109 LEU 109 124 124 LEU LEU A . n A 1 110 VAL 110 125 125 VAL VAL A . n A 1 111 GLY 111 126 126 GLY GLY A . n A 1 112 HIS 112 127 127 HIS HIS A . n A 1 113 ASP 113 128 128 ASP ALA A . n A 1 114 THR 114 129 129 THR THR A . n A 1 115 PHE 115 130 130 PHE PHE A . n A 1 116 THR 116 131 131 THR THR A . n A 1 117 LYS 117 132 132 LYS LYS A . n A 1 118 VAL 118 133 133 VAL VAL A . n A 1 119 LYS 119 134 134 LYS LYS A . n B 1 1 GLY 1 16 16 GLY GLY B . n B 1 2 ILE 2 17 17 ILE ILE B . n B 1 3 THR 3 18 18 THR THR B . n B 1 4 GLY 4 19 19 GLY GLY B . n B 1 5 THR 5 20 20 THR THR B . n B 1 6 TRP 6 21 21 TRP TRP B . n B 1 7 TYR 7 22 22 TYR TYR B . n B 1 8 ASN 8 23 23 ASN ASN B . n B 1 9 GLN 9 24 24 GLN GLN B . n B 1 10 LEU 10 25 25 LEU LEU B . n B 1 11 GLY 11 26 26 GLY GLY B . n B 1 12 SER 12 27 27 SER SER B . n B 1 13 THR 13 28 28 THR THR B . n B 1 14 PHE 14 29 29 PHE PHE B . n B 1 15 ILE 15 30 30 ILE ILE B . n B 1 16 VAL 16 31 31 VAL VAL B . n B 1 17 THR 17 32 32 THR THR B . n B 1 18 ALA 18 33 33 ALA ALA B . n B 1 19 GLY 19 34 34 GLY GLY B . n B 1 20 ALA 20 35 35 ALA ALA B . n B 1 21 ASP 21 36 36 ASP ASP B . n B 1 22 GLY 22 37 37 GLY GLY B . n B 1 23 ALA 23 38 38 ALA ALA B . n B 1 24 LEU 24 39 39 LEU LEU B . n B 1 25 THR 25 40 40 THR THR B . n B 1 26 GLY 26 41 41 GLY GLY B . n B 1 27 THR 27 42 42 THR THR B . n B 1 28 TYR 28 43 43 TYR TYR B . n B 1 29 GLU 29 44 44 GLU GLU B . n B 1 30 SER 30 45 45 SER ALA B . n B 1 31 ALA 31 46 46 ALA ALA B . n B 1 32 VAL 32 47 47 VAL VAL B . n B 1 33 GLY 33 48 48 GLY GLY B . n B 1 34 ASN 34 49 49 ASN ASN B . n B 1 35 ALA 35 50 50 ALA ALA B . n B 1 36 GLU 36 51 51 GLU GLU B . n B 1 37 SER 37 52 52 SER SER B . n B 1 38 ARG 38 53 53 ARG ARG B . n B 1 39 TYR 39 54 54 TYR TYR B . n B 1 40 VAL 40 55 55 VAL VAL B . n B 1 41 LEU 41 56 56 LEU LEU B . n B 1 42 THR 42 57 57 THR THR B . n B 1 43 GLY 43 58 58 GLY GLY B . n B 1 44 ARG 44 59 59 ARG ARG B . n B 1 45 TYR 45 60 60 TYR TYR B . n B 1 46 ASP 46 61 61 ASP ASP B . n B 1 47 SER 47 62 62 SER SER B . n B 1 48 ALA 48 63 63 ALA ALA B . n B 1 49 PRO 49 64 64 PRO PRO B . n B 1 50 ALA 50 65 65 ALA ALA B . n B 1 51 THR 51 66 66 THR THR B . n B 1 52 ASP 52 67 67 ASP ASP B . n B 1 53 GLY 53 68 68 GLY GLY B . n B 1 54 SER 54 69 69 SER SER B . n B 1 55 GLY 55 70 70 GLY GLY B . n B 1 56 THR 56 71 71 THR THR B . n B 1 57 ALA 57 72 72 ALA ALA B . n B 1 58 LEU 58 73 73 LEU LEU B . n B 1 59 GLY 59 74 74 GLY GLY B . n B 1 60 TRP 60 75 75 TRP TRP B . n B 1 61 THR 61 76 76 THR THR B . n B 1 62 VAL 62 77 77 VAL VAL B . n B 1 63 ALA 63 78 78 ALA ALA B . n B 1 64 TRP 64 79 79 TRP TRP B . n B 1 65 LYS 65 80 80 LYS LYS B . n B 1 66 ASN 66 81 81 ASN ASN B . n B 1 67 ASN 67 82 82 ASN ASN B . n B 1 68 TYR 68 83 83 TYR TYR B . n B 1 69 ARG 69 84 84 ARG ARG B . n B 1 70 ASN 70 85 85 ASN ASN B . n B 1 71 ALA 71 86 86 ALA ALA B . n B 1 72 HIS 72 87 87 HIS HIS B . n B 1 73 SER 73 88 88 SER SER B . n B 1 74 ALA 74 89 89 ALA ALA B . n B 1 75 THR 75 90 90 THR THR B . n B 1 76 THR 76 91 91 THR THR B . n B 1 77 TRP 77 92 92 TRP TRP B . n B 1 78 SER 78 93 93 SER SER B . n B 1 79 GLY 79 94 94 GLY GLY B . n B 1 80 GLN 80 95 95 GLN GLN B . n B 1 81 TYR 81 96 96 TYR TYR B . n B 1 82 VAL 82 97 97 VAL VAL B . n B 1 83 GLY 83 98 98 GLY GLY B . n B 1 84 GLY 84 99 99 GLY GLY B . n B 1 85 ALA 85 100 100 ALA ALA B . n B 1 86 GLU 86 101 101 GLU GLU B . n B 1 87 ALA 87 102 102 ALA ALA B . n B 1 88 ARG 88 103 103 ARG ARG B . n B 1 89 ILE 89 104 104 ILE ILE B . n B 1 90 ASN 90 105 105 ASN ASN B . n B 1 91 THR 91 106 106 THR THR B . n B 1 92 GLN 92 107 107 GLN GLN B . n B 1 93 TRP 93 108 108 TRP TRP B . n B 1 94 LEU 94 109 109 LEU LEU B . n B 1 95 LEU 95 110 110 LEU LEU B . n B 1 96 THR 96 111 111 THR THR B . n B 1 97 SER 97 112 112 SER SER B . n B 1 98 GLY 98 113 113 GLY GLY B . n B 1 99 THR 99 114 114 THR THR B . n B 1 100 THR 100 115 115 THR THR B . n B 1 101 GLU 101 116 116 GLU GLU B . n B 1 102 ALA 102 117 117 ALA ALA B . n B 1 103 ASN 103 118 118 ASN ASN B . n B 1 104 ALA 104 119 119 ALA ALA B . n B 1 105 TRP 105 120 120 TRP TRP B . n B 1 106 LYS 106 121 121 LYS LYS B . n B 1 107 SER 107 122 122 SER SER B . n B 1 108 THR 108 123 123 THR THR B . n B 1 109 LEU 109 124 124 LEU LEU B . n B 1 110 VAL 110 125 125 VAL VAL B . n B 1 111 GLY 111 126 126 GLY GLY B . n B 1 112 HIS 112 127 127 HIS HIS B . n B 1 113 ASP 113 128 128 ASP ALA B . n B 1 114 THR 114 129 129 THR THR B . n B 1 115 PHE 115 130 130 PHE PHE B . n B 1 116 THR 116 131 131 THR THR B . n B 1 117 LYS 117 132 132 LYS LYS B . n B 1 118 VAL 118 133 133 VAL VAL B . n B 1 119 LYS 119 134 134 LYS LYS B . n C 1 1 GLY 1 16 16 GLY GLY C . n C 1 2 ILE 2 17 17 ILE ILE C . n C 1 3 THR 3 18 18 THR THR C . n C 1 4 GLY 4 19 19 GLY GLY C . n C 1 5 THR 5 20 20 THR THR C . n C 1 6 TRP 6 21 21 TRP TRP C . n C 1 7 TYR 7 22 22 TYR TYR C . n C 1 8 ASN 8 23 23 ASN ASN C . n C 1 9 GLN 9 24 24 GLN GLN C . n C 1 10 LEU 10 25 25 LEU LEU C . n C 1 11 GLY 11 26 26 GLY GLY C . n C 1 12 SER 12 27 27 SER SER C . n C 1 13 THR 13 28 28 THR THR C . n C 1 14 PHE 14 29 29 PHE PHE C . n C 1 15 ILE 15 30 30 ILE ILE C . n C 1 16 VAL 16 31 31 VAL VAL C . n C 1 17 THR 17 32 32 THR THR C . n C 1 18 ALA 18 33 33 ALA ALA C . n C 1 19 GLY 19 34 34 GLY GLY C . n C 1 20 ALA 20 35 35 ALA ALA C . n C 1 21 ASP 21 36 36 ASP ASP C . n C 1 22 GLY 22 37 37 GLY GLY C . n C 1 23 ALA 23 38 38 ALA ALA C . n C 1 24 LEU 24 39 39 LEU LEU C . n C 1 25 THR 25 40 40 THR THR C . n C 1 26 GLY 26 41 41 GLY GLY C . n C 1 27 THR 27 42 42 THR THR C . n C 1 28 TYR 28 43 43 TYR TYR C . n C 1 29 GLU 29 44 44 GLU GLU C . n C 1 30 SER 30 45 45 SER ALA C . n C 1 31 ALA 31 46 46 ALA ALA C . n C 1 32 VAL 32 47 47 VAL VAL C . n C 1 33 GLY 33 48 48 GLY GLY C . n C 1 34 ASN 34 49 49 ASN ASN C . n C 1 35 ALA 35 50 50 ALA ALA C . n C 1 36 GLU 36 51 51 GLU GLU C . n C 1 37 SER 37 52 52 SER SER C . n C 1 38 ARG 38 53 53 ARG ARG C . n C 1 39 TYR 39 54 54 TYR TYR C . n C 1 40 VAL 40 55 55 VAL VAL C . n C 1 41 LEU 41 56 56 LEU LEU C . n C 1 42 THR 42 57 57 THR THR C . n C 1 43 GLY 43 58 58 GLY GLY C . n C 1 44 ARG 44 59 59 ARG ARG C . n C 1 45 TYR 45 60 60 TYR TYR C . n C 1 46 ASP 46 61 61 ASP ASP C . n C 1 47 SER 47 62 62 SER SER C . n C 1 48 ALA 48 63 63 ALA ALA C . n C 1 49 PRO 49 64 64 PRO PRO C . n C 1 50 ALA 50 65 65 ALA ALA C . n C 1 51 THR 51 66 66 THR THR C . n C 1 52 ASP 52 67 67 ASP ASP C . n C 1 53 GLY 53 68 68 GLY GLY C . n C 1 54 SER 54 69 69 SER SER C . n C 1 55 GLY 55 70 70 GLY GLY C . n C 1 56 THR 56 71 71 THR THR C . n C 1 57 ALA 57 72 72 ALA ALA C . n C 1 58 LEU 58 73 73 LEU LEU C . n C 1 59 GLY 59 74 74 GLY GLY C . n C 1 60 TRP 60 75 75 TRP TRP C . n C 1 61 THR 61 76 76 THR THR C . n C 1 62 VAL 62 77 77 VAL VAL C . n C 1 63 ALA 63 78 78 ALA ALA C . n C 1 64 TRP 64 79 79 TRP TRP C . n C 1 65 LYS 65 80 80 LYS LYS C . n C 1 66 ASN 66 81 81 ASN ASN C . n C 1 67 ASN 67 82 82 ASN ASN C . n C 1 68 TYR 68 83 83 TYR TYR C . n C 1 69 ARG 69 84 84 ARG ARG C . n C 1 70 ASN 70 85 85 ASN ASN C . n C 1 71 ALA 71 86 86 ALA ALA C . n C 1 72 HIS 72 87 87 HIS HIS C . n C 1 73 SER 73 88 88 SER SER C . n C 1 74 ALA 74 89 89 ALA ALA C . n C 1 75 THR 75 90 90 THR THR C . n C 1 76 THR 76 91 91 THR THR C . n C 1 77 TRP 77 92 92 TRP TRP C . n C 1 78 SER 78 93 93 SER SER C . n C 1 79 GLY 79 94 94 GLY GLY C . n C 1 80 GLN 80 95 95 GLN GLN C . n C 1 81 TYR 81 96 96 TYR TYR C . n C 1 82 VAL 82 97 97 VAL VAL C . n C 1 83 GLY 83 98 98 GLY GLY C . n C 1 84 GLY 84 99 99 GLY GLY C . n C 1 85 ALA 85 100 100 ALA ALA C . n C 1 86 GLU 86 101 101 GLU GLU C . n C 1 87 ALA 87 102 102 ALA ALA C . n C 1 88 ARG 88 103 103 ARG ARG C . n C 1 89 ILE 89 104 104 ILE ILE C . n C 1 90 ASN 90 105 105 ASN ASN C . n C 1 91 THR 91 106 106 THR THR C . n C 1 92 GLN 92 107 107 GLN GLN C . n C 1 93 TRP 93 108 108 TRP TRP C . n C 1 94 LEU 94 109 109 LEU LEU C . n C 1 95 LEU 95 110 110 LEU LEU C . n C 1 96 THR 96 111 111 THR THR C . n C 1 97 SER 97 112 112 SER SER C . n C 1 98 GLY 98 113 113 GLY GLY C . n C 1 99 THR 99 114 114 THR THR C . n C 1 100 THR 100 115 115 THR THR C . n C 1 101 GLU 101 116 116 GLU GLU C . n C 1 102 ALA 102 117 117 ALA ALA C . n C 1 103 ASN 103 118 118 ASN ASN C . n C 1 104 ALA 104 119 119 ALA ALA C . n C 1 105 TRP 105 120 120 TRP TRP C . n C 1 106 LYS 106 121 121 LYS LYS C . n C 1 107 SER 107 122 122 SER SER C . n C 1 108 THR 108 123 123 THR THR C . n C 1 109 LEU 109 124 124 LEU LEU C . n C 1 110 VAL 110 125 125 VAL VAL C . n C 1 111 GLY 111 126 126 GLY GLY C . n C 1 112 HIS 112 127 127 HIS HIS C . n C 1 113 ASP 113 128 128 ASP ALA C . n C 1 114 THR 114 129 129 THR THR C . n C 1 115 PHE 115 130 130 PHE PHE C . n C 1 116 THR 116 131 131 THR THR C . n C 1 117 LYS 117 132 132 LYS LYS C . n C 1 118 VAL 118 133 133 VAL VAL C . n C 1 119 LYS 119 134 134 LYS LYS C . n D 1 1 GLY 1 16 16 GLY GLY D . n D 1 2 ILE 2 17 17 ILE ILE D . n D 1 3 THR 3 18 18 THR THR D . n D 1 4 GLY 4 19 19 GLY GLY D . n D 1 5 THR 5 20 20 THR THR D . n D 1 6 TRP 6 21 21 TRP TRP D . n D 1 7 TYR 7 22 22 TYR TYR D . n D 1 8 ASN 8 23 23 ASN ASN D . n D 1 9 GLN 9 24 24 GLN GLN D . n D 1 10 LEU 10 25 25 LEU LEU D . n D 1 11 GLY 11 26 26 GLY GLY D . n D 1 12 SER 12 27 27 SER SER D . n D 1 13 THR 13 28 28 THR THR D . n D 1 14 PHE 14 29 29 PHE PHE D . n D 1 15 ILE 15 30 30 ILE ILE D . n D 1 16 VAL 16 31 31 VAL VAL D . n D 1 17 THR 17 32 32 THR THR D . n D 1 18 ALA 18 33 33 ALA ALA D . n D 1 19 GLY 19 34 34 GLY GLY D . n D 1 20 ALA 20 35 35 ALA ALA D . n D 1 21 ASP 21 36 36 ASP ASP D . n D 1 22 GLY 22 37 37 GLY GLY D . n D 1 23 ALA 23 38 38 ALA ALA D . n D 1 24 LEU 24 39 39 LEU LEU D . n D 1 25 THR 25 40 40 THR THR D . n D 1 26 GLY 26 41 41 GLY GLY D . n D 1 27 THR 27 42 42 THR THR D . n D 1 28 TYR 28 43 43 TYR TYR D . n D 1 29 GLU 29 44 44 GLU GLU D . n D 1 30 SER 30 45 45 SER ALA D . n D 1 31 ALA 31 46 46 ALA ALA D . n D 1 32 VAL 32 47 47 VAL VAL D . n D 1 33 GLY 33 48 48 GLY GLY D . n D 1 34 ASN 34 49 49 ASN ASN D . n D 1 35 ALA 35 50 50 ALA ALA D . n D 1 36 GLU 36 51 51 GLU GLU D . n D 1 37 SER 37 52 52 SER SER D . n D 1 38 ARG 38 53 53 ARG ARG D . n D 1 39 TYR 39 54 54 TYR TYR D . n D 1 40 VAL 40 55 55 VAL VAL D . n D 1 41 LEU 41 56 56 LEU LEU D . n D 1 42 THR 42 57 57 THR THR D . n D 1 43 GLY 43 58 58 GLY GLY D . n D 1 44 ARG 44 59 59 ARG ARG D . n D 1 45 TYR 45 60 60 TYR TYR D . n D 1 46 ASP 46 61 61 ASP ASP D . n D 1 47 SER 47 62 62 SER SER D . n D 1 48 ALA 48 63 63 ALA ALA D . n D 1 49 PRO 49 64 64 PRO PRO D . n D 1 50 ALA 50 65 65 ALA ALA D . n D 1 51 THR 51 66 66 THR THR D . n D 1 52 ASP 52 67 67 ASP ASP D . n D 1 53 GLY 53 68 68 GLY GLY D . n D 1 54 SER 54 69 69 SER SER D . n D 1 55 GLY 55 70 70 GLY GLY D . n D 1 56 THR 56 71 71 THR THR D . n D 1 57 ALA 57 72 72 ALA ALA D . n D 1 58 LEU 58 73 73 LEU LEU D . n D 1 59 GLY 59 74 74 GLY GLY D . n D 1 60 TRP 60 75 75 TRP TRP D . n D 1 61 THR 61 76 76 THR THR D . n D 1 62 VAL 62 77 77 VAL VAL D . n D 1 63 ALA 63 78 78 ALA ALA D . n D 1 64 TRP 64 79 79 TRP TRP D . n D 1 65 LYS 65 80 80 LYS LYS D . n D 1 66 ASN 66 81 81 ASN ASN D . n D 1 67 ASN 67 82 82 ASN ASN D . n D 1 68 TYR 68 83 83 TYR TYR D . n D 1 69 ARG 69 84 84 ARG ARG D . n D 1 70 ASN 70 85 85 ASN ASN D . n D 1 71 ALA 71 86 86 ALA ALA D . n D 1 72 HIS 72 87 87 HIS HIS D . n D 1 73 SER 73 88 88 SER SER D . n D 1 74 ALA 74 89 89 ALA ALA D . n D 1 75 THR 75 90 90 THR THR D . n D 1 76 THR 76 91 91 THR THR D . n D 1 77 TRP 77 92 92 TRP TRP D . n D 1 78 SER 78 93 93 SER SER D . n D 1 79 GLY 79 94 94 GLY GLY D . n D 1 80 GLN 80 95 95 GLN GLN D . n D 1 81 TYR 81 96 96 TYR TYR D . n D 1 82 VAL 82 97 97 VAL VAL D . n D 1 83 GLY 83 98 98 GLY GLY D . n D 1 84 GLY 84 99 99 GLY GLY D . n D 1 85 ALA 85 100 100 ALA ALA D . n D 1 86 GLU 86 101 101 GLU GLU D . n D 1 87 ALA 87 102 102 ALA ALA D . n D 1 88 ARG 88 103 103 ARG ARG D . n D 1 89 ILE 89 104 104 ILE ILE D . n D 1 90 ASN 90 105 105 ASN ASN D . n D 1 91 THR 91 106 106 THR THR D . n D 1 92 GLN 92 107 107 GLN GLN D . n D 1 93 TRP 93 108 108 TRP TRP D . n D 1 94 LEU 94 109 109 LEU LEU D . n D 1 95 LEU 95 110 110 LEU LEU D . n D 1 96 THR 96 111 111 THR THR D . n D 1 97 SER 97 112 112 SER SER D . n D 1 98 GLY 98 113 113 GLY GLY D . n D 1 99 THR 99 114 114 THR THR D . n D 1 100 THR 100 115 115 THR THR D . n D 1 101 GLU 101 116 116 GLU GLU D . n D 1 102 ALA 102 117 117 ALA ALA D . n D 1 103 ASN 103 118 118 ASN ASN D . n D 1 104 ALA 104 119 119 ALA ALA D . n D 1 105 TRP 105 120 120 TRP TRP D . n D 1 106 LYS 106 121 121 LYS LYS D . n D 1 107 SER 107 122 122 SER SER D . n D 1 108 THR 108 123 123 THR THR D . n D 1 109 LEU 109 124 124 LEU LEU D . n D 1 110 VAL 110 125 125 VAL VAL D . n D 1 111 GLY 111 126 126 GLY GLY D . n D 1 112 HIS 112 127 127 HIS HIS D . n D 1 113 ASP 113 128 128 ASP ALA D . n D 1 114 THR 114 129 129 THR THR D . n D 1 115 PHE 115 130 130 PHE PHE D . n D 1 116 THR 116 131 131 THR THR D . n D 1 117 LYS 117 132 132 LYS LYS D . n D 1 118 VAL 118 133 133 VAL VAL D . n D 1 119 LYS 119 134 134 LYS LYS D . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 45 ? OG ? A SER 30 OG 2 1 Y 1 A ASP 128 ? CG ? A ASP 113 CG 3 1 Y 1 A ASP 128 ? OD1 ? A ASP 113 OD1 4 1 Y 1 A ASP 128 ? OD2 ? A ASP 113 OD2 5 1 Y 1 B SER 45 ? OG ? B SER 30 OG 6 1 Y 1 B ASP 128 ? CG ? B ASP 113 CG 7 1 Y 1 B ASP 128 ? OD1 ? B ASP 113 OD1 8 1 Y 1 B ASP 128 ? OD2 ? B ASP 113 OD2 9 1 Y 1 C SER 45 ? OG ? C SER 30 OG 10 1 Y 1 C ASP 128 ? CG ? C ASP 113 CG 11 1 Y 1 C ASP 128 ? OD1 ? C ASP 113 OD1 12 1 Y 1 C ASP 128 ? OD2 ? C ASP 113 OD2 13 1 Y 1 D SER 45 ? OG ? D SER 30 OG 14 1 Y 1 D ASP 128 ? CG ? D ASP 113 CG 15 1 Y 1 D ASP 128 ? OD1 ? D ASP 113 OD1 16 1 Y 1 D ASP 128 ? OD2 ? D ASP 113 OD2 # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.12_2829: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6J6K _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6J6K _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 6J6K _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3636 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.138 ? 4976 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.275 ? 1984 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.057 ? 556 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 624 ? f_plane_restr ? ? # _struct.entry_id 6J6K _struct.title 'Apo-state streptavidin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6J6K _struct_keywords.text 'streptavidin, CYTOSOLIC PROTEIN' _struct_keywords.pdbx_keywords 'CYTOSOLIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAV_STRAV _struct_ref.pdbx_db_accession P22629 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQ YVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVK ; _struct_ref.pdbx_align_begin 40 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6J6K A 1 ? 119 ? P22629 40 ? 158 ? 16 134 2 1 6J6K B 1 ? 119 ? P22629 40 ? 158 ? 16 134 3 1 6J6K C 1 ? 119 ? P22629 40 ? 158 ? 16 134 4 1 6J6K D 1 ? 119 ? P22629 40 ? 158 ? 16 134 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8250 ? 1 MORE -56 ? 1 'SSA (A^2)' 20640 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA4 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 4 ? TRP A 6 ? GLY A 19 TRP A 21 AA1 2 PHE A 14 ? ALA A 18 ? PHE A 29 ALA A 33 AA1 3 ALA A 23 ? TYR A 28 ? ALA A 38 TYR A 43 AA1 4 TYR A 39 ? TYR A 45 ? TYR A 54 TYR A 60 AA1 5 THR A 56 ? LYS A 65 ? THR A 71 LYS A 80 AA1 6 ASN A 70 ? VAL A 82 ? ASN A 85 VAL A 97 AA1 7 ARG A 88 ? SER A 97 ? ARG A 103 SER A 112 AA1 8 GLY A 111 ? PHE A 115 ? GLY A 126 PHE A 130 AA2 1 GLY B 4 ? TRP B 6 ? GLY B 19 TRP B 21 AA2 2 PHE B 14 ? ALA B 18 ? PHE B 29 ALA B 33 AA2 3 ALA B 23 ? TYR B 28 ? ALA B 38 TYR B 43 AA2 4 TYR B 39 ? TYR B 45 ? TYR B 54 TYR B 60 AA2 5 THR B 56 ? LYS B 65 ? THR B 71 LYS B 80 AA2 6 ASN B 70 ? VAL B 82 ? ASN B 85 VAL B 97 AA2 7 ARG B 88 ? SER B 97 ? ARG B 103 SER B 112 AA2 8 GLY B 111 ? PHE B 115 ? GLY B 126 PHE B 130 AA3 1 GLY C 4 ? TRP C 6 ? GLY C 19 TRP C 21 AA3 2 PHE C 14 ? ALA C 18 ? PHE C 29 ALA C 33 AA3 3 ALA C 23 ? TYR C 28 ? ALA C 38 TYR C 43 AA3 4 TYR C 39 ? TYR C 45 ? TYR C 54 TYR C 60 AA3 5 THR C 56 ? LYS C 65 ? THR C 71 LYS C 80 AA3 6 ASN C 70 ? VAL C 82 ? ASN C 85 VAL C 97 AA3 7 ARG C 88 ? SER C 97 ? ARG C 103 SER C 112 AA3 8 GLY C 111 ? PHE C 115 ? GLY C 126 PHE C 130 AA4 1 GLY D 4 ? TRP D 6 ? GLY D 19 TRP D 21 AA4 2 PHE D 14 ? ALA D 18 ? PHE D 29 ALA D 33 AA4 3 ALA D 23 ? TYR D 28 ? ALA D 38 TYR D 43 AA4 4 TYR D 39 ? TYR D 45 ? TYR D 54 TYR D 60 AA4 5 THR D 56 ? LYS D 65 ? THR D 71 LYS D 80 AA4 6 ASN D 70 ? VAL D 82 ? ASN D 85 VAL D 97 AA4 7 ARG D 88 ? SER D 97 ? ARG D 103 SER D 112 AA4 8 GLY D 111 ? PHE D 115 ? GLY D 126 PHE D 130 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 6 ? N TRP A 21 O PHE A 14 ? O PHE A 29 AA1 2 3 N THR A 17 ? N THR A 32 O THR A 25 ? O THR A 40 AA1 3 4 N TYR A 28 ? N TYR A 43 O TYR A 39 ? O TYR A 54 AA1 4 5 N THR A 42 ? N THR A 57 O THR A 61 ? O THR A 76 AA1 5 6 N VAL A 62 ? N VAL A 77 O THR A 75 ? O THR A 90 AA1 6 7 N VAL A 82 ? N VAL A 97 O ARG A 88 ? O ARG A 103 AA1 7 8 N ILE A 89 ? N ILE A 104 O PHE A 115 ? O PHE A 130 AA2 1 2 N TRP B 6 ? N TRP B 21 O PHE B 14 ? O PHE B 29 AA2 2 3 N THR B 17 ? N THR B 32 O THR B 25 ? O THR B 40 AA2 3 4 N TYR B 28 ? N TYR B 43 O TYR B 39 ? O TYR B 54 AA2 4 5 N THR B 42 ? N THR B 57 O THR B 61 ? O THR B 76 AA2 5 6 N VAL B 62 ? N VAL B 77 O THR B 75 ? O THR B 90 AA2 6 7 N VAL B 82 ? N VAL B 97 O ARG B 88 ? O ARG B 103 AA2 7 8 N ILE B 89 ? N ILE B 104 O PHE B 115 ? O PHE B 130 AA3 1 2 N TRP C 6 ? N TRP C 21 O PHE C 14 ? O PHE C 29 AA3 2 3 N THR C 17 ? N THR C 32 O THR C 25 ? O THR C 40 AA3 3 4 N TYR C 28 ? N TYR C 43 O TYR C 39 ? O TYR C 54 AA3 4 5 N THR C 42 ? N THR C 57 O THR C 61 ? O THR C 76 AA3 5 6 N VAL C 62 ? N VAL C 77 O THR C 75 ? O THR C 90 AA3 6 7 N VAL C 82 ? N VAL C 97 O ARG C 88 ? O ARG C 103 AA3 7 8 N ILE C 89 ? N ILE C 104 O PHE C 115 ? O PHE C 130 AA4 1 2 N TRP D 6 ? N TRP D 21 O PHE D 14 ? O PHE D 29 AA4 2 3 N THR D 17 ? N THR D 32 O THR D 25 ? O THR D 40 AA4 3 4 N TYR D 28 ? N TYR D 43 O TYR D 39 ? O TYR D 54 AA4 4 5 N THR D 42 ? N THR D 57 O THR D 61 ? O THR D 76 AA4 5 6 N VAL D 62 ? N VAL D 77 O THR D 75 ? O THR D 90 AA4 6 7 N VAL D 82 ? N VAL D 97 O ARG D 88 ? O ARG D 103 AA4 7 8 N ILE D 89 ? N ILE D 104 O PHE D 115 ? O PHE D 130 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 45 ? ? 65.71 104.34 2 1 ALA A 46 ? ? -22.95 -133.06 3 1 VAL A 47 ? ? 3.70 -38.92 4 1 ASP A 67 ? ? -92.85 49.39 5 1 ASN A 118 ? ? -95.24 32.35 6 1 SER B 45 ? ? 65.60 104.35 7 1 ALA B 46 ? ? -22.79 -133.12 8 1 VAL B 47 ? ? 3.60 -38.80 9 1 ASP B 67 ? ? -92.72 49.30 10 1 ASN B 118 ? ? -95.21 32.25 11 1 SER C 45 ? ? 65.64 104.34 12 1 ALA C 46 ? ? -22.93 -133.09 13 1 VAL C 47 ? ? 3.63 -38.82 14 1 ASP C 67 ? ? -92.73 49.38 15 1 ASN C 118 ? ? -95.24 32.32 16 1 SER D 45 ? ? 65.59 104.36 17 1 ALA D 46 ? ? -22.79 -133.11 18 1 VAL D 47 ? ? 3.68 -38.86 19 1 ASP D 67 ? ? -92.76 49.33 20 1 ASN D 118 ? ? -95.27 32.34 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 45 ? ? ALA A 46 ? ? -141.63 2 1 ALA A 46 ? ? VAL A 47 ? ? -99.24 3 1 SER B 45 ? ? ALA B 46 ? ? -141.68 4 1 ALA B 46 ? ? VAL B 47 ? ? -99.18 5 1 SER C 45 ? ? ALA C 46 ? ? -141.62 6 1 ALA C 46 ? ? VAL C 47 ? ? -99.21 7 1 SER D 45 ? ? ALA D 46 ? ? -141.68 8 1 ALA D 46 ? ? VAL D 47 ? ? -99.27 # _em_3d_fitting.entry_id 6J6K _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6J6K _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 23991 _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Streptavidin _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6J6K _em_image_scans.id 1 _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 32 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 5.0 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-32 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6J6K _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 0.01 _em_imaging.nominal_defocus_max -800 _em_imaging.nominal_defocus_min -800 _em_imaging.nominal_magnification 215000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 285 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6J6K _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6J6K _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6J6K _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry D2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 PHE N N N N 213 PHE CA C N S 214 PHE C C N N 215 PHE O O N N 216 PHE CB C N N 217 PHE CG C Y N 218 PHE CD1 C Y N 219 PHE CD2 C Y N 220 PHE CE1 C Y N 221 PHE CE2 C Y N 222 PHE CZ C Y N 223 PHE OXT O N N 224 PHE H H N N 225 PHE H2 H N N 226 PHE HA H N N 227 PHE HB2 H N N 228 PHE HB3 H N N 229 PHE HD1 H N N 230 PHE HD2 H N N 231 PHE HE1 H N N 232 PHE HE2 H N N 233 PHE HZ H N N 234 PHE HXT H N N 235 PRO N N N N 236 PRO CA C N S 237 PRO C C N N 238 PRO O O N N 239 PRO CB C N N 240 PRO CG C N N 241 PRO CD C N N 242 PRO OXT O N N 243 PRO H H N N 244 PRO HA H N N 245 PRO HB2 H N N 246 PRO HB3 H N N 247 PRO HG2 H N N 248 PRO HG3 H N N 249 PRO HD2 H N N 250 PRO HD3 H N N 251 PRO HXT H N N 252 SER N N N N 253 SER CA C N S 254 SER C C N N 255 SER O O N N 256 SER CB C N N 257 SER OG O N N 258 SER OXT O N N 259 SER H H N N 260 SER H2 H N N 261 SER HA H N N 262 SER HB2 H N N 263 SER HB3 H N N 264 SER HG H N N 265 SER HXT H N N 266 THR N N N N 267 THR CA C N S 268 THR C C N N 269 THR O O N N 270 THR CB C N R 271 THR OG1 O N N 272 THR CG2 C N N 273 THR OXT O N N 274 THR H H N N 275 THR H2 H N N 276 THR HA H N N 277 THR HB H N N 278 THR HG1 H N N 279 THR HG21 H N N 280 THR HG22 H N N 281 THR HG23 H N N 282 THR HXT H N N 283 TRP N N N N 284 TRP CA C N S 285 TRP C C N N 286 TRP O O N N 287 TRP CB C N N 288 TRP CG C Y N 289 TRP CD1 C Y N 290 TRP CD2 C Y N 291 TRP NE1 N Y N 292 TRP CE2 C Y N 293 TRP CE3 C Y N 294 TRP CZ2 C Y N 295 TRP CZ3 C Y N 296 TRP CH2 C Y N 297 TRP OXT O N N 298 TRP H H N N 299 TRP H2 H N N 300 TRP HA H N N 301 TRP HB2 H N N 302 TRP HB3 H N N 303 TRP HD1 H N N 304 TRP HE1 H N N 305 TRP HE3 H N N 306 TRP HZ2 H N N 307 TRP HZ3 H N N 308 TRP HH2 H N N 309 TRP HXT H N N 310 TYR N N N N 311 TYR CA C N S 312 TYR C C N N 313 TYR O O N N 314 TYR CB C N N 315 TYR CG C Y N 316 TYR CD1 C Y N 317 TYR CD2 C Y N 318 TYR CE1 C Y N 319 TYR CE2 C Y N 320 TYR CZ C Y N 321 TYR OH O N N 322 TYR OXT O N N 323 TYR H H N N 324 TYR H2 H N N 325 TYR HA H N N 326 TYR HB2 H N N 327 TYR HB3 H N N 328 TYR HD1 H N N 329 TYR HD2 H N N 330 TYR HE1 H N N 331 TYR HE2 H N N 332 TYR HH H N N 333 TYR HXT H N N 334 VAL N N N N 335 VAL CA C N S 336 VAL C C N N 337 VAL O O N N 338 VAL CB C N N 339 VAL CG1 C N N 340 VAL CG2 C N N 341 VAL OXT O N N 342 VAL H H N N 343 VAL H2 H N N 344 VAL HA H N N 345 VAL HB H N N 346 VAL HG11 H N N 347 VAL HG12 H N N 348 VAL HG13 H N N 349 VAL HG21 H N N 350 VAL HG22 H N N 351 VAL HG23 H N N 352 VAL HXT H N N 353 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 PHE N CA sing N N 203 PHE N H sing N N 204 PHE N H2 sing N N 205 PHE CA C sing N N 206 PHE CA CB sing N N 207 PHE CA HA sing N N 208 PHE C O doub N N 209 PHE C OXT sing N N 210 PHE CB CG sing N N 211 PHE CB HB2 sing N N 212 PHE CB HB3 sing N N 213 PHE CG CD1 doub Y N 214 PHE CG CD2 sing Y N 215 PHE CD1 CE1 sing Y N 216 PHE CD1 HD1 sing N N 217 PHE CD2 CE2 doub Y N 218 PHE CD2 HD2 sing N N 219 PHE CE1 CZ doub Y N 220 PHE CE1 HE1 sing N N 221 PHE CE2 CZ sing Y N 222 PHE CE2 HE2 sing N N 223 PHE CZ HZ sing N N 224 PHE OXT HXT sing N N 225 PRO N CA sing N N 226 PRO N CD sing N N 227 PRO N H sing N N 228 PRO CA C sing N N 229 PRO CA CB sing N N 230 PRO CA HA sing N N 231 PRO C O doub N N 232 PRO C OXT sing N N 233 PRO CB CG sing N N 234 PRO CB HB2 sing N N 235 PRO CB HB3 sing N N 236 PRO CG CD sing N N 237 PRO CG HG2 sing N N 238 PRO CG HG3 sing N N 239 PRO CD HD2 sing N N 240 PRO CD HD3 sing N N 241 PRO OXT HXT sing N N 242 SER N CA sing N N 243 SER N H sing N N 244 SER N H2 sing N N 245 SER CA C sing N N 246 SER CA CB sing N N 247 SER CA HA sing N N 248 SER C O doub N N 249 SER C OXT sing N N 250 SER CB OG sing N N 251 SER CB HB2 sing N N 252 SER CB HB3 sing N N 253 SER OG HG sing N N 254 SER OXT HXT sing N N 255 THR N CA sing N N 256 THR N H sing N N 257 THR N H2 sing N N 258 THR CA C sing N N 259 THR CA CB sing N N 260 THR CA HA sing N N 261 THR C O doub N N 262 THR C OXT sing N N 263 THR CB OG1 sing N N 264 THR CB CG2 sing N N 265 THR CB HB sing N N 266 THR OG1 HG1 sing N N 267 THR CG2 HG21 sing N N 268 THR CG2 HG22 sing N N 269 THR CG2 HG23 sing N N 270 THR OXT HXT sing N N 271 TRP N CA sing N N 272 TRP N H sing N N 273 TRP N H2 sing N N 274 TRP CA C sing N N 275 TRP CA CB sing N N 276 TRP CA HA sing N N 277 TRP C O doub N N 278 TRP C OXT sing N N 279 TRP CB CG sing N N 280 TRP CB HB2 sing N N 281 TRP CB HB3 sing N N 282 TRP CG CD1 doub Y N 283 TRP CG CD2 sing Y N 284 TRP CD1 NE1 sing Y N 285 TRP CD1 HD1 sing N N 286 TRP CD2 CE2 doub Y N 287 TRP CD2 CE3 sing Y N 288 TRP NE1 CE2 sing Y N 289 TRP NE1 HE1 sing N N 290 TRP CE2 CZ2 sing Y N 291 TRP CE3 CZ3 doub Y N 292 TRP CE3 HE3 sing N N 293 TRP CZ2 CH2 doub Y N 294 TRP CZ2 HZ2 sing N N 295 TRP CZ3 CH2 sing Y N 296 TRP CZ3 HZ3 sing N N 297 TRP CH2 HH2 sing N N 298 TRP OXT HXT sing N N 299 TYR N CA sing N N 300 TYR N H sing N N 301 TYR N H2 sing N N 302 TYR CA C sing N N 303 TYR CA CB sing N N 304 TYR CA HA sing N N 305 TYR C O doub N N 306 TYR C OXT sing N N 307 TYR CB CG sing N N 308 TYR CB HB2 sing N N 309 TYR CB HB3 sing N N 310 TYR CG CD1 doub Y N 311 TYR CG CD2 sing Y N 312 TYR CD1 CE1 sing Y N 313 TYR CD1 HD1 sing N N 314 TYR CD2 CE2 doub Y N 315 TYR CD2 HD2 sing N N 316 TYR CE1 CZ doub Y N 317 TYR CE1 HE1 sing N N 318 TYR CE2 CZ sing Y N 319 TYR CE2 HE2 sing N N 320 TYR CZ OH sing N N 321 TYR OH HH sing N N 322 TYR OXT HXT sing N N 323 VAL N CA sing N N 324 VAL N H sing N N 325 VAL N H2 sing N N 326 VAL CA C sing N N 327 VAL CA CB sing N N 328 VAL CA HA sing N N 329 VAL C O doub N N 330 VAL C OXT sing N N 331 VAL CB CG1 sing N N 332 VAL CB CG2 sing N N 333 VAL CB HB sing N N 334 VAL CG1 HG11 sing N N 335 VAL CG1 HG12 sing N N 336 VAL CG1 HG13 sing N N 337 VAL CG2 HG21 sing N N 338 VAL CG2 HG22 sing N N 339 VAL CG2 HG23 sing N N 340 VAL OXT HXT sing N N 341 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 25 mM '(HOCH2)3CNH2' Tris-HCl 1 2 75 mM NaCl 'Sodium chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.052 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1895 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Streptomyces avidinii' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50.0 _em_image_recording.average_exposure_time 2.56 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1450 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector . _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate 'VOLTA PHASE PLATE' _em_imaging_optics.sph_aberration_corrector 'spherical aberration corrector' # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 709967 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? Gautomatch ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 12 CLASSIFICATION ? RELION ? 1 ? ? 13 RECONSTRUCTION ? RELION ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number '2016YFA0501100 to H.W.' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6J6K _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_