HEADER HYDROLASE 16-JAN-19 6J72 TITLE CRYSTAL STRUCTURE OF INIA FROM MYCOBACTERIUM SMEGMATIS WITH GTP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISONIAZID INDUCIBLE GENE PROTEIN INIA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: INIA, MSMEI_0678; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GTPASE, DYNAMIN-LIKE, DRUG-RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.WANG,X.Y.GUO,J.J.HU,J.LI,Z.H.RAO REVDAT 2 27-MAR-24 6J72 1 REMARK REVDAT 1 11-SEP-19 6J72 0 JRNL AUTH M.WANG,X.GUO,X.YANG,B.ZHANG,J.REN,A.LIU,Y.RAN,B.YAN,F.CHEN, JRNL AUTH 2 L.W.GUDDAT,J.HU,J.LI,Z.RAO JRNL TITL MYCOBACTERIAL DYNAMIN-LIKE PROTEIN INIA MEDIATES MEMBRANE JRNL TITL 2 FISSION. JRNL REF NAT COMMUN V. 10 3906 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31467269 JRNL DOI 10.1038/S41467-019-11860-Z REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4980 - 5.0321 1.00 2703 134 0.1573 0.1578 REMARK 3 2 5.0321 - 3.9948 1.00 2664 147 0.1434 0.1780 REMARK 3 3 3.9948 - 3.4900 1.00 2679 137 0.1721 0.2292 REMARK 3 4 3.4900 - 3.1710 1.00 2640 155 0.1979 0.2446 REMARK 3 5 3.1710 - 2.9438 1.00 2661 135 0.2069 0.2644 REMARK 3 6 2.9438 - 2.7702 1.00 2645 145 0.2139 0.2458 REMARK 3 7 2.7702 - 2.6315 1.00 2694 114 0.2213 0.2632 REMARK 3 8 2.6315 - 2.5170 1.00 2682 112 0.2113 0.2841 REMARK 3 9 2.5170 - 2.4201 1.00 2642 133 0.2145 0.2372 REMARK 3 10 2.4201 - 2.3366 1.00 2672 150 0.2156 0.2779 REMARK 3 11 2.3366 - 2.2635 1.00 2625 150 0.2147 0.2550 REMARK 3 12 2.2635 - 2.2000 0.99 2563 178 0.2299 0.2453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4450 REMARK 3 ANGLE : 0.844 6038 REMARK 3 CHIRALITY : 0.032 699 REMARK 3 PLANARITY : 0.004 797 REMARK 3 DIHEDRAL : 16.563 1675 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8470 47.8338 45.1186 REMARK 3 T TENSOR REMARK 3 T11: 0.4133 T22: 0.4086 REMARK 3 T33: 0.5517 T12: 0.0744 REMARK 3 T13: 0.0092 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.7982 L22: 2.7025 REMARK 3 L33: 6.1936 L12: 0.9490 REMARK 3 L13: 0.2633 L23: -1.8771 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: -0.0708 S13: -0.1198 REMARK 3 S21: 0.1006 S22: 0.0789 S23: 0.1992 REMARK 3 S31: 0.3993 S32: -0.6043 S33: 0.0418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5798 16.0517 46.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.3970 T22: 0.3990 REMARK 3 T33: 0.3371 T12: 0.0218 REMARK 3 T13: 0.0006 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 1.4770 L22: 1.7753 REMARK 3 L33: 2.0367 L12: -0.0615 REMARK 3 L13: 0.0846 L23: 0.9319 REMARK 3 S TENSOR REMARK 3 S11: 0.1794 S12: 0.0490 S13: -0.3862 REMARK 3 S21: -0.0944 S22: 0.1687 S23: 0.5632 REMARK 3 S31: 0.3343 S32: -0.6831 S33: -0.2655 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1229 18.5880 46.2275 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.2495 REMARK 3 T33: 0.2513 T12: 0.0338 REMARK 3 T13: 0.0086 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 0.9588 L22: 1.8283 REMARK 3 L33: 3.5436 L12: 0.0759 REMARK 3 L13: 0.2525 L23: -0.6580 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: -0.0914 S13: -0.1903 REMARK 3 S21: 0.1545 S22: 0.0800 S23: 0.1167 REMARK 3 S31: 0.0414 S32: -0.2763 S33: -0.1581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6923 40.6903 53.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.4407 T22: 0.4208 REMARK 3 T33: 0.3670 T12: 0.1139 REMARK 3 T13: 0.0825 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.9945 L22: 4.8530 REMARK 3 L33: 1.6374 L12: -1.9843 REMARK 3 L13: 1.3617 L23: -2.0593 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.2023 S13: 0.2034 REMARK 3 S21: 0.3040 S22: -0.0216 S23: -0.1782 REMARK 3 S31: -0.1053 S32: -0.2929 S33: 0.1044 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7473 38.1115 30.5897 REMARK 3 T TENSOR REMARK 3 T11: 0.2995 T22: 0.1840 REMARK 3 T33: 0.2549 T12: 0.0658 REMARK 3 T13: 0.0246 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.7719 L22: 4.2776 REMARK 3 L33: 0.7378 L12: -2.8158 REMARK 3 L13: -0.2614 L23: 0.7246 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0709 S13: 0.0999 REMARK 3 S21: 0.0739 S22: -0.0556 S23: -0.0836 REMARK 3 S31: -0.0720 S32: -0.0279 S33: 0.0168 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7522 22.1707 27.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.4573 T22: 0.4362 REMARK 3 T33: 0.5361 T12: -0.0297 REMARK 3 T13: 0.0676 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.4488 L22: 0.2304 REMARK 3 L33: 1.0680 L12: 0.1035 REMARK 3 L13: 0.1058 L23: 0.5727 REMARK 3 S TENSOR REMARK 3 S11: -0.1599 S12: 0.0613 S13: 0.2594 REMARK 3 S21: 0.1538 S22: 0.3599 S23: -0.4808 REMARK 3 S31: 0.0689 S32: 0.1260 S33: -0.2591 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7623 33.8986 26.5897 REMARK 3 T TENSOR REMARK 3 T11: 0.3398 T22: 0.2585 REMARK 3 T33: 0.2880 T12: 0.0808 REMARK 3 T13: 0.0394 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.2715 L22: 5.0333 REMARK 3 L33: 0.8608 L12: -3.3965 REMARK 3 L13: -0.2492 L23: 0.8269 REMARK 3 S TENSOR REMARK 3 S11: 0.2589 S12: 0.2648 S13: -0.1660 REMARK 3 S21: -0.3580 S22: -0.2403 S23: 0.1425 REMARK 3 S31: -0.0708 S32: -0.0237 S33: 0.0211 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 564 THROUGH 594 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1236 66.3442 48.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.6507 T22: 0.5794 REMARK 3 T33: 0.5821 T12: 0.2662 REMARK 3 T13: 0.0402 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 3.1515 L22: 4.5966 REMARK 3 L33: 2.0189 L12: -0.8019 REMARK 3 L13: 0.5365 L23: -1.1948 REMARK 3 S TENSOR REMARK 3 S11: -0.3797 S12: -0.4425 S13: 0.5457 REMARK 3 S21: 0.6697 S22: 0.3530 S23: 0.3197 REMARK 3 S31: -0.9527 S32: -0.7537 S33: 0.0888 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AAA, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.49800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.99600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.49800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.99600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 422 REMARK 465 ARG A 423 REMARK 465 ASP A 424 REMARK 465 MET A 425 REMARK 465 GLY A 426 REMARK 465 ALA A 427 REMARK 465 GLY A 428 REMARK 465 PHE A 429 REMARK 465 GLY A 430 REMARK 465 GLU A 431 REMARK 465 LEU A 432 REMARK 465 ASN A 433 REMARK 465 SER A 434 REMARK 465 LEU A 435 REMARK 465 ALA A 436 REMARK 465 ARG A 437 REMARK 465 LEU A 438 REMARK 465 GLU A 439 REMARK 465 ALA A 440 REMARK 465 LYS A 441 REMARK 465 PRO A 442 REMARK 465 ILE A 443 REMARK 465 LYS A 444 REMARK 465 ILE A 445 REMARK 465 GLY A 446 REMARK 465 HIS A 447 REMARK 465 LYS A 448 REMARK 465 VAL A 449 REMARK 465 VAL A 450 REMARK 465 THR A 451 REMARK 465 GLY A 452 REMARK 465 MET A 453 REMARK 465 ARG A 454 REMARK 465 GLY A 455 REMARK 465 SER A 456 REMARK 465 ALA A 595 REMARK 465 ALA A 596 REMARK 465 LEU A 597 REMARK 465 GLU A 598 REMARK 465 HIS A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 105 OG1 THR A 108 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 77.42 -119.95 REMARK 500 ASP A 67 83.63 -153.88 REMARK 500 GLU A 68 -115.32 170.87 REMARK 500 SER A 69 -124.34 63.63 REMARK 500 GLU A 105 -16.15 -45.64 REMARK 500 THR A 107 -16.57 -49.67 REMARK 500 ASP A 109 99.50 -65.11 REMARK 500 THR A 172 30.00 -93.64 REMARK 500 HIS A 369 22.89 -147.77 REMARK 500 SER A 468 -89.08 -119.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 THR A 70 OG1 90.9 REMARK 620 3 GTP A 701 O1G 173.7 89.3 REMARK 620 4 GTP A 701 O1B 93.5 175.4 86.2 REMARK 620 5 HOH A 810 O 86.8 92.9 86.8 85.9 REMARK 620 6 HOH A 852 O 92.4 88.9 93.9 92.4 178.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 703 DBREF 6J72 A 1 594 UNP I7FE16 I7FE16_MYCS2 28 621 SEQADV 6J72 MET A -1 UNP I7FE16 INITIATING METHIONINE SEQADV 6J72 GLY A 0 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 ALA A 595 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 ALA A 596 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 LEU A 597 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 GLU A 598 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 HIS A 599 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 HIS A 600 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 HIS A 601 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 HIS A 602 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 HIS A 603 UNP I7FE16 EXPRESSION TAG SEQADV 6J72 HIS A 604 UNP I7FE16 EXPRESSION TAG SEQRES 1 A 606 MET GLY VAL ILE VAL GLU LEU ILE ASP HIS THR SER ALA SEQRES 2 A 606 ILE ALA ALA ALA LYS ASP ARG ALA ASP LEU VAL GLU ARG SEQRES 3 A 606 LEU ARG ALA ALA LYS ALA ARG ILE SER ASP PRO GLN ILE SEQRES 4 A 606 ARG VAL VAL ILE ALA GLY GLN LEU LYS GLN GLY LYS SER SEQRES 5 A 606 GLN LEU LEU ASN SER LEU LEU ASN ILE PRO VAL ALA ARG SEQRES 6 A 606 VAL GLY ASP ASP GLU SER THR VAL LEU ALA THR VAL VAL SEQRES 7 A 606 SER TYR GLY GLU GLN ALA SER ALA ARG LEU VAL VAL ALA SEQRES 8 A 606 ARG PRO ASP GLY ALA GLU PRO GLU LEU ILE GLU ILE PRO SEQRES 9 A 606 PRO SER GLU VAL THR THR ASP LEU ARG ARG ALA PRO GLN SEQRES 10 A 606 ALA SER GLY ARG GLN VAL LEU ARG VAL GLU VAL THR ALA SEQRES 11 A 606 PRO SER PRO LEU LEU LYS GLY GLY LEU ALA PHE VAL ASP SEQRES 12 A 606 THR PRO GLY VAL GLY GLY HIS GLY GLN PRO HIS LEU SER SEQRES 13 A 606 ALA THR LEU GLY LEU LEU PRO ASP ALA ASP ALA MET LEU SEQRES 14 A 606 MET ILE SER ASP THR SER GLN GLU PHE THR GLU PRO GLU SEQRES 15 A 606 MET LYS PHE ILE ARG GLN ALA LEU GLU ILE CYS PRO VAL SEQRES 16 A 606 ALA ALA ILE VAL ALA THR LYS THR ASP LEU TYR PRO HIS SEQRES 17 A 606 TRP ARG GLN ILE VAL ASP ALA ASN ILE ALA HIS LEU GLN SEQRES 18 A 606 ARG ALA GLY LEU ASN VAL PRO VAL ILE PRO ALA SER SER SEQRES 19 A 606 VAL LEU ARG SER HIS ALA ILE SER LEU ASN ASP LYS GLU SEQRES 20 A 606 LEU ASN GLU GLU SER ASN PHE PRO ALA ILE VAL LYS PHE SEQRES 21 A 606 LEU SER GLU HIS VAL LEU SER ARG GLN ASN ASP ARG ILE SEQRES 22 A 606 ARG ASP GLN ILE VAL ASP GLU ILE ARG SER ALA ALA GLU SEQRES 23 A 606 HIS LEU LEU LEU ALA VAL GLU SER GLU LEU SER SER PHE SEQRES 24 A 606 ASN ASP PRO GLY GLU ARG GLU ARG LEU THR ALA GLU LEU SEQRES 25 A 606 GLU ARG ARG LYS GLN GLU ALA GLN ASP ALA LEU GLN GLN SEQRES 26 A 606 THR ALA LEU TRP GLN GLN VAL LEU SER ASP GLY ILE ALA SEQRES 27 A 606 ASP LEU THR ALA ASP VAL ASP HIS ASP LEU ARG HIS ARG SEQRES 28 A 606 PHE ARG ILE ILE ALA ALA HIS THR GLU LYS VAL ILE ASP SEQRES 29 A 606 GLY CYS ASP PRO THR LEU HIS TRP ALA GLU ILE GLY ALA SEQRES 30 A 606 GLU LEU GLU ASP ALA VAL ALA THR ALA VAL GLY ASP ASN SEQRES 31 A 606 PHE VAL TRP ALA TYR GLN ARG ALA GLU ALA LEU ALA ALA SEQRES 32 A 606 GLU VAL ALA ARG THR PHE THR GLU ALA GLY LEU ASP ALA SEQRES 33 A 606 VAL GLN MET PRO GLN ILE ASP ALA ARG ASP MET GLY ALA SEQRES 34 A 606 GLY PHE GLY GLU LEU ASN SER LEU ALA ARG LEU GLU ALA SEQRES 35 A 606 LYS PRO ILE LYS ILE GLY HIS LYS VAL VAL THR GLY MET SEQRES 36 A 606 ARG GLY SER TYR GLY GLY VAL LEU MET PHE GLY MET LEU SEQRES 37 A 606 THR SER PHE ALA GLY LEU GLY MET PHE ASN PRO LEU SER SEQRES 38 A 606 LEU GLY ALA GLY PHE VAL LEU GLY ARG LYS ALA TYR LYS SEQRES 39 A 606 GLU ASP MET GLU ASN ARG MET LEU ARG VAL ARG ASN GLU SEQRES 40 A 606 ALA LYS ALA ASN VAL ARG LYS PHE VAL ASP ASP VAL ALA SEQRES 41 A 606 PHE VAL VAL GLY LYS GLU SER ARG ASP ARG LEU LYS GLY SEQRES 42 A 606 ILE GLN ARG GLN LEU ARG ASP HIS TYR ARG GLU ILE ALA SEQRES 43 A 606 ASN GLN THR THR ARG SER LEU ASN GLU SER LEU GLN ALA SEQRES 44 A 606 ALA ILE ALA ALA ALA LYS VAL GLU GLU ALA GLU ARG ASN SEQRES 45 A 606 THR ARG VAL LYS GLU LEU GLU ARG GLN GLN ASN ILE LEU SEQRES 46 A 606 LYS GLN VAL VAL ASP HIS ALA ALA LYS LEU ALA ALA ALA SEQRES 47 A 606 LEU GLU HIS HIS HIS HIS HIS HIS HET GTP A 701 32 HET MG A 702 1 HET TLA A 703 10 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 TLA C4 H6 O6 FORMUL 5 HOH *333(H2 O) HELIX 1 AA1 GLY A 0 LYS A 16 1 17 HELIX 2 AA2 ARG A 18 ASP A 34 1 17 HELIX 3 AA3 GLY A 48 ASN A 58 1 11 HELIX 4 AA4 ARG A 90 ALA A 94 5 5 HELIX 5 AA5 PRO A 102 THR A 107 5 6 HELIX 6 AA6 ASP A 109 SER A 117 5 9 HELIX 7 AA7 SER A 130 LYS A 134 5 5 HELIX 8 AA8 HIS A 152 LEU A 160 5 9 HELIX 9 AA9 THR A 177 CYS A 191 1 15 HELIX 10 AB1 HIS A 206 ALA A 221 1 16 HELIX 11 AB2 SER A 231 ASN A 242 1 12 HELIX 12 AB3 ASP A 243 SER A 250 1 8 HELIX 13 AB4 ASN A 251 VAL A 263 1 13 HELIX 14 AB5 VAL A 263 ASP A 299 1 37 HELIX 15 AB6 GLU A 302 ALA A 320 1 19 HELIX 16 AB7 ALA A 325 GLY A 363 1 39 HELIX 17 AB8 CYS A 364 LEU A 368 5 5 HELIX 18 AB9 HIS A 369 ALA A 410 1 42 HELIX 19 AC1 ASP A 494 ALA A 561 1 68 HELIX 20 AC2 ALA A 562 VAL A 564 5 3 HELIX 21 AC3 GLU A 565 ALA A 567 5 3 HELIX 22 AC4 GLU A 568 LEU A 593 1 26 SHEET 1 AA1 9 GLU A 97 GLU A 100 0 SHEET 2 AA1 9 ALA A 84 VAL A 88 -1 N VAL A 88 O GLU A 97 SHEET 3 AA1 9 VAL A 121 ALA A 128 -1 O GLU A 125 N ARG A 85 SHEET 4 AA1 9 THR A 74 TYR A 78 1 N VAL A 75 O VAL A 124 SHEET 5 AA1 9 LEU A 137 ASP A 141 -1 O PHE A 139 N VAL A 76 SHEET 6 AA1 9 ILE A 37 ALA A 42 1 N VAL A 39 O ALA A 138 SHEET 7 AA1 9 ALA A 165 ASP A 171 1 O ILE A 169 N ALA A 42 SHEET 8 AA1 9 ALA A 194 THR A 199 1 O ALA A 195 N MET A 168 SHEET 9 AA1 9 VAL A 227 PRO A 229 1 O ILE A 228 N ILE A 196 LINK OG SER A 50 MG MG A 702 1555 1555 1.99 LINK OG1 THR A 70 MG MG A 702 1555 1555 1.98 LINK O1G GTP A 701 MG MG A 702 1555 1555 1.98 LINK O1B GTP A 701 MG MG A 702 1555 1555 2.13 LINK MG MG A 702 O HOH A 810 1555 1555 2.15 LINK MG MG A 702 O HOH A 852 1555 1555 2.20 SITE 1 AC1 23 LEU A 45 LYS A 46 GLN A 47 GLY A 48 SITE 2 AC1 23 LYS A 49 SER A 50 GLN A 51 VAL A 64 SITE 3 AC1 23 ASP A 66 GLU A 68 THR A 70 GLY A 144 SITE 4 AC1 23 LYS A 200 ASP A 202 LEU A 203 SER A 232 SITE 5 AC1 23 VAL A 233 MG A 702 HOH A 810 HOH A 819 SITE 6 AC1 23 HOH A 826 HOH A 852 HOH A 854 SITE 1 AC2 5 SER A 50 THR A 70 GTP A 701 HOH A 810 SITE 2 AC2 5 HOH A 852 SITE 1 AC3 10 LEU A 132 ARG A 235 VAL A 256 LEU A 480 SITE 2 AC3 10 GLY A 481 ALA A 482 GLY A 483 PHE A 484 SITE 3 AC3 10 VAL A 485 LEU A 486 CRYST1 91.514 91.514 139.494 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010927 0.006309 0.000000 0.00000 SCALE2 0.000000 0.012618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007169 0.00000