HEADER TOXIN 18-JAN-19 6J7O TITLE CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TITLE 2 TOXIN, RV1045) MUTANT E146Q FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLYLTRANSFERASE-LIKE TOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RV1045; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GUANYLYLTRANSFERASE;GUANYLYLTRANSFERASE-LIKE TOXIN;TA, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR X.YU,X.GAO,K.ZHU,J.A.WOJDYLA,M.WANG,S.CUI REVDAT 4 22-NOV-23 6J7O 1 LINK REVDAT 3 27-MAY-20 6J7O 1 TITLE REVDAT 2 20-MAY-20 6J7O 1 JRNL REVDAT 1 13-MAY-20 6J7O 0 JRNL AUTH X.YU,X.GAO,K.ZHU,H.YIN,X.MAO,J.A.WOJDYLA,B.QIN,H.HUANG, JRNL AUTH 2 M.WANG,Y.C.SUN,S.CUI JRNL TITL CHARACTERIZATION OF A TOXIN-ANTITOXIN SYSTEM IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS SUGGESTS NEUTRALIZATION BY JRNL TITL 3 PHOSPHORYLATION AS THE ANTITOXICITY MECHANISM. JRNL REF COMMUN BIOL V. 3 216 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32382148 JRNL DOI 10.1038/S42003-020-0941-1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2959 - 4.0917 1.00 2869 165 0.1684 0.1813 REMARK 3 2 4.0917 - 3.2482 1.00 2803 138 0.1773 0.2064 REMARK 3 3 3.2482 - 2.8378 1.00 2775 141 0.2022 0.2375 REMARK 3 4 2.8378 - 2.5784 1.00 2768 113 0.2064 0.2141 REMARK 3 5 2.5784 - 2.3936 1.00 2743 137 0.2047 0.2055 REMARK 3 6 2.3936 - 2.2525 1.00 2766 127 0.2173 0.2550 REMARK 3 7 2.2525 - 2.1397 1.00 2724 136 0.2276 0.2800 REMARK 3 8 2.1397 - 2.0465 1.00 2730 140 0.2339 0.2543 REMARK 3 9 2.0465 - 1.9678 1.00 2690 148 0.2721 0.2840 REMARK 3 10 1.9678 - 1.8999 0.99 2731 117 0.3109 0.3843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2277 REMARK 3 ANGLE : 0.924 3113 REMARK 3 CHIRALITY : 0.050 366 REMARK 3 PLANARITY : 0.006 410 REMARK 3 DIHEDRAL : 13.153 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.970 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.94 REMARK 200 R MERGE FOR SHELL (I) : 1.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6J7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE;0.1M BIS-TRIS PH6.5;25%PEG3350 CRYO:10%ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.14000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.07000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.07000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 SER A 7 OG REMARK 470 LYS A 125 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 271 O HOH A 401 1.13 REMARK 500 HD1 HIS A 207 O HOH A 402 1.16 REMARK 500 HG SER A 134 O HOH A 403 1.48 REMARK 500 HH12 ARG A 138 MG MG A 307 1.51 REMARK 500 HH21 ARG A 25 O HOH A 405 1.56 REMARK 500 O HOH A 426 O HOH A 564 1.90 REMARK 500 NH1 ARG A 271 O HOH A 401 1.94 REMARK 500 ND1 HIS A 207 O HOH A 402 1.98 REMARK 500 OG SER A 134 O HOH A 403 2.11 REMARK 500 NH2 ARG A 286 O HOH A 404 2.13 REMARK 500 NH2 ARG A 25 O HOH A 405 2.13 REMARK 500 O GLU A 105 O HOH A 406 2.18 REMARK 500 OG SER A 78 O HOH A 407 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 129 -167.60 -160.11 REMARK 500 PHE A 140 -48.52 -130.18 REMARK 500 ALA A 152 -126.96 46.86 REMARK 500 ARG A 205 40.16 -80.77 REMARK 500 LEU A 220 -129.68 51.89 REMARK 500 GLN A 240 -121.68 -122.38 REMARK 500 THR A 291 -38.91 -144.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 28 O REMARK 620 2 HOH A 528 O 91.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 PRO A 56 O 123.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 LEU A 269 O 20.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 78 OG REMARK 620 2 HOH A 418 O 56.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 172 O REMARK 620 2 ASP A 204 OD2 59.9 REMARK 620 3 HOH A 577 O 125.8 69.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 261 O REMARK 620 2 ASP A 265 OD1 126.7 REMARK 620 3 HOH A 527 O 96.4 76.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 278 O REMARK 620 2 HOH A 550 O 110.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 557 O REMARK 620 2 HOH A 575 O 164.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 313 DBREF 6J7O A 1 293 UNP P96356 P96356_MYCTU 1 293 SEQADV 6J7O MET A -19 UNP P96356 EXPRESSION TAG SEQADV 6J7O GLY A -18 UNP P96356 EXPRESSION TAG SEQADV 6J7O SER A -17 UNP P96356 EXPRESSION TAG SEQADV 6J7O SER A -16 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A -15 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A -14 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A -13 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A -12 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A -11 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A -10 UNP P96356 EXPRESSION TAG SEQADV 6J7O SER A -9 UNP P96356 EXPRESSION TAG SEQADV 6J7O SER A -8 UNP P96356 EXPRESSION TAG SEQADV 6J7O GLY A -7 UNP P96356 EXPRESSION TAG SEQADV 6J7O LEU A -6 UNP P96356 EXPRESSION TAG SEQADV 6J7O VAL A -5 UNP P96356 EXPRESSION TAG SEQADV 6J7O PRO A -4 UNP P96356 EXPRESSION TAG SEQADV 6J7O ARG A -3 UNP P96356 EXPRESSION TAG SEQADV 6J7O GLY A -2 UNP P96356 EXPRESSION TAG SEQADV 6J7O SER A -1 UNP P96356 EXPRESSION TAG SEQADV 6J7O HIS A 0 UNP P96356 EXPRESSION TAG SEQADV 6J7O GLN A 146 UNP P96356 GLU 146 ENGINEERED MUTATION SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 313 LEU VAL PRO ARG GLY SER HIS MET THR LYS PRO TYR SER SEQRES 3 A 313 SER PRO PRO THR ASN LEU ARG SER LEU ARG ASP ARG LEU SEQRES 4 A 313 THR GLN VAL ALA GLU ARG GLN GLY VAL VAL PHE GLY ARG SEQRES 5 A 313 LEU GLN ARG HIS VAL ALA MET ILE VAL VAL ALA GLN PHE SEQRES 6 A 313 ALA ALA THR LEU THR ASP ASP THR GLY ALA PRO LEU LEU SEQRES 7 A 313 LEU VAL LYS GLY GLY SER SER LEU GLU LEU ARG ARG GLY SEQRES 8 A 313 ILE PRO ASP SER ARG THR SER LYS ASP PHE ASP THR VAL SEQRES 9 A 313 ALA ARG ARG ASP ILE GLU LEU ILE HIS GLU GLN LEU ALA SEQRES 10 A 313 ASP ALA GLY GLU THR GLY TRP GLU GLY PHE THR ALA ILE SEQRES 11 A 313 PHE THR ALA PRO GLU GLU ILE ASP VAL PRO GLY MET PRO SEQRES 12 A 313 VAL LYS PRO ARG ARG PHE THR ALA LYS LEU SER TYR ARG SEQRES 13 A 313 GLY ARG ALA PHE ALA THR VAL PRO ILE GLN VAL SER SER SEQRES 14 A 313 VAL GLU ALA GLY ASN ALA ASP GLN PHE ASP THR LEU THR SEQRES 15 A 313 SER ASP ALA LEU GLY LEU VAL GLY VAL PRO ALA ALA VAL SEQRES 16 A 313 ALA VAL PRO CYS MET THR ILE PRO TRP GLN ILE ALA GLN SEQRES 17 A 313 LYS LEU HIS ALA VAL THR ALA VAL LEU GLU GLU PRO LYS SEQRES 18 A 313 VAL ASN ASP ARG ALA HIS ASP LEU VAL ASP LEU GLN LEU SEQRES 19 A 313 LEU GLU GLY LEU LEU LEU ASP ALA ASP LEU MET PRO THR SEQRES 20 A 313 ARG SER ALA CYS ILE ALA ILE PHE GLU ALA ARG ALA GLN SEQRES 21 A 313 HIS PRO TRP PRO PRO ARG VAL ALA THR LEU PRO HIS TRP SEQRES 22 A 313 PRO LEU ILE TYR ALA GLY ALA LEU GLU GLY LEU ASP HIS SEQRES 23 A 313 LEU GLU LEU ALA ARG THR VAL ASP ALA ALA ALA GLN ALA SEQRES 24 A 313 VAL GLN ARG PHE VAL ALA ARG ILE ASP ARG ALA THR LYS SEQRES 25 A 313 ARG HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET MG A 306 1 HET MG A 307 1 HET MG A 308 1 HET MG A 309 1 HET MG A 310 1 HET MG A 311 1 HET MG A 312 1 HET MG A 313 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 13(MG 2+) FORMUL 15 HOH *183(H2 O) HELIX 1 AA1 ASN A 11 GLY A 27 1 17 HELIX 2 AA2 VAL A 29 THR A 48 1 20 HELIX 3 AA3 LYS A 61 GLY A 71 1 11 HELIX 4 AA4 ILE A 72 SER A 75 5 4 HELIX 5 AA5 ASP A 88 GLY A 103 1 16 HELIX 6 AA6 ASP A 164 VAL A 169 1 6 HELIX 7 AA7 THR A 181 ALA A 195 1 15 HELIX 8 AA8 ALA A 206 LEU A 220 1 15 HELIX 9 AA9 LEU A 224 ALA A 239 1 16 HELIX 10 AB1 HIS A 252 LEU A 261 1 10 HELIX 11 AB2 THR A 272 ALA A 290 1 19 SHEET 1 AA1 5 LEU A 58 VAL A 60 0 SHEET 2 AA1 5 PHE A 81 ALA A 85 -1 O VAL A 84 N LEU A 59 SHEET 3 AA1 5 ARG A 138 SER A 149 1 O SER A 148 N ALA A 85 SHEET 4 AA1 5 ARG A 127 TYR A 135 -1 N LEU A 133 O PHE A 140 SHEET 5 AA1 5 PHE A 107 PHE A 111 -1 N ILE A 110 O LYS A 132 SHEET 1 AA2 5 LEU A 58 VAL A 60 0 SHEET 2 AA2 5 PHE A 81 ALA A 85 -1 O VAL A 84 N LEU A 59 SHEET 3 AA2 5 ARG A 138 SER A 149 1 O SER A 148 N ALA A 85 SHEET 4 AA2 5 ARG A 127 TYR A 135 -1 N LEU A 133 O PHE A 140 SHEET 5 AA2 5 GLU A 115 GLU A 116 -1 N GLU A 115 O ARG A 128 SHEET 1 AA3 2 ASP A 159 LEU A 161 0 SHEET 2 AA3 2 VAL A 177 CYS A 179 -1 O CYS A 179 N ASP A 159 LINK O VAL A 28 MG MG A 308 1555 1555 2.67 LINK OD2 ASP A 51 MG MG A 310 1555 1555 2.90 LINK OD2 ASP A 52 MG MG A 304 1555 4544 2.70 LINK O PRO A 56 MG MG A 310 1555 1555 2.88 LINK OG ASER A 78 MG MG A 313 1555 1555 2.90 LINK O PRO A 172 MG MG A 301 1555 1555 2.98 LINK OD2 ASP A 204 MG MG A 301 1555 3655 2.65 LINK O LEU A 261 MG MG A 305 1555 1555 2.73 LINK OD1 ASP A 265 MG MG A 305 1555 1555 1.97 LINK O LEU A 269 MG MG A 304 1555 1555 2.63 LINK O GLN A 278 MG MG A 309 1555 1555 2.93 LINK MG MG A 301 O HOH A 577 1555 2544 2.60 LINK MG MG A 302 O HOH A 557 1555 3655 2.02 LINK MG MG A 302 O HOH A 575 1555 1555 2.63 LINK MG MG A 303 O HOH A 501 1555 1555 2.04 LINK MG MG A 305 O HOH A 527 1555 1555 2.80 LINK MG MG A 308 O HOH A 528 1555 1555 2.90 LINK MG MG A 309 O HOH A 550 1555 1555 2.64 LINK MG MG A 312 O HOH A 509 1555 1555 2.52 LINK MG MG A 313 O HOH A 418 1555 1555 2.88 CISPEP 1 TRP A 243 PRO A 244 0 -3.41 SITE 1 AC1 3 PRO A 172 ASP A 204 HOH A 577 SITE 1 AC2 2 HOH A 557 HOH A 575 SITE 1 AC3 3 ARG A 76 ALA A 260 HOH A 501 SITE 1 AC4 5 ASP A 52 LEU A 267 GLU A 268 LEU A 269 SITE 2 AC4 5 ARG A 271 SITE 1 AC5 5 LEU A 261 LEU A 264 ASP A 265 ARG A 271 SITE 2 AC5 5 HOH A 527 SITE 1 AC6 1 ALA A 195 SITE 1 AC7 4 ASN A 11 LEU A 12 ARG A 13 ARG A 138 SITE 1 AC8 5 ALA A 23 GLU A 24 VAL A 28 LEU A 220 SITE 2 AC8 5 HOH A 528 SITE 1 AC9 3 GLN A 278 ARG A 282 HOH A 550 SITE 1 AD1 3 ASP A 51 PRO A 56 ARG A 86 SITE 1 AD2 2 GLY A 153 TRP A 184 SITE 1 AD3 5 MET A 39 SER A 64 ASP A 80 MG A 313 SITE 2 AD3 5 HOH A 509 SITE 1 AD4 6 GLY A 63 SER A 64 GLU A 67 SER A 78 SITE 2 AD4 6 MG A 312 HOH A 418 CRYST1 95.443 95.443 69.210 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010477 0.006049 0.000000 0.00000 SCALE2 0.000000 0.012098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014449 0.00000