HEADER ISOMERASE 21-JAN-19 6J90 TITLE CRYSTAL STRUCTURE OF GYRASEB N-TERMINAL DOMAIN COMPLEX WITH ATP FROM TITLE 2 SALMONELLA TYPHI AT 2.2A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N TERMINAL DOMAIN; COMPND 5 SYNONYM: GYRASEB; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 90370; SOURCE 4 GENE: GYRB, STY3943, T3684; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28(A) KEYWDS TOPOISOMERASE, ATPASE PROTEIN, GYRB-NTD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KAUR,E.SACHDEVA,P.TIWARI,D.GUPTA,A.S.ETHAYATHULLA,P.KAUR REVDAT 3 22-NOV-23 6J90 1 REMARK REVDAT 2 29-JAN-20 6J90 1 REMARK ATOM REVDAT 1 22-JAN-20 6J90 0 JRNL AUTH G.KAUR,E.SACHDEVA,P.TIWARI,D.GUPTA,A.S.ETHAYATHULLA,P.KAUR JRNL TITL CRYSTAL STRUCTURE OF GYRASEB N-TERMINAL DOMAIN COMPLEX WITH JRNL TITL 2 ATP FROM SALMONELLA TYPHI AT 2.2A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 23623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1724 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.14000 REMARK 3 B22 (A**2) : 3.33000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.814 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3123 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2884 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4213 ; 1.533 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6690 ; 1.347 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 6.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;34.393 ;22.331 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;16.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.721 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3490 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 640 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1559 ; 2.298 ; 3.082 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1558 ; 2.299 ; 3.081 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1947 ; 3.499 ; 4.617 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1948 ; 3.498 ; 4.618 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 3.033 ; 3.348 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1565 ; 3.033 ; 3.349 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2267 ; 4.697 ; 4.869 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13346 ; 7.540 ;58.359 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 13347 ; 7.540 ;58.360 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.760 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EI1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LITHIUM CHLORIDE 0.05M BIS TRIS REMARK 280 12% PEG MME, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.55250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.55250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.55600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.27250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.55600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.27250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.55250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.55600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.27250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.55250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.55600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.27250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.55250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 893 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR A 234 O HOH A 601 1.93 REMARK 500 O HOH A 602 O HOH A 653 1.97 REMARK 500 O1G ATP A 502 O HOH A 602 2.03 REMARK 500 ND2 ASN A 265 O HOH A 603 2.14 REMARK 500 O2B ATP A 502 O HOH A 602 2.15 REMARK 500 OD1 ASN A 46 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 115 -21.31 -153.21 REMARK 500 ASN A 178 -92.25 65.99 REMARK 500 HIS A 217 49.79 -147.22 REMARK 500 ASN A 272 -7.03 77.50 REMARK 500 SER A 309 -54.67 -136.04 REMARK 500 SER A 342 108.84 -40.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 934 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 6.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 507 DBREF 6J90 A 1 394 UNP P0A2I4 GYRB_SALTI 1 394 SEQADV 6J90 ALA A 40 UNP P0A2I4 VAL 40 CONFLICT SEQADV 6J90 SER A 85 UNP P0A2I4 GLU 85 CONFLICT SEQADV 6J90 LYS A 173 UNP P0A2I4 HIS 173 CONFLICT SEQADV 6J90 SER A 174 UNP P0A2I4 GLU 174 CONFLICT SEQADV 6J90 HIS A 395 UNP P0A2I4 EXPRESSION TAG SEQADV 6J90 HIS A 396 UNP P0A2I4 EXPRESSION TAG SEQADV 6J90 HIS A 397 UNP P0A2I4 EXPRESSION TAG SEQADV 6J90 HIS A 398 UNP P0A2I4 EXPRESSION TAG SEQADV 6J90 HIS A 399 UNP P0A2I4 EXPRESSION TAG SEQADV 6J90 HIS A 400 UNP P0A2I4 EXPRESSION TAG SEQRES 1 A 400 MET SER ASN SER TYR ASP SER SER SER ILE LYS VAL LEU SEQRES 2 A 400 LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 3 A 400 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 4 A 400 ALA PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU SEQRES 5 A 400 ALA GLY HIS CYS LYS ASP ILE VAL VAL THR ILE HIS ALA SEQRES 6 A 400 ASP ASN SER VAL SER VAL THR ASP ASP GLY ARG GLY ILE SEQRES 7 A 400 PRO THR GLY ILE HIS PRO SER GLU GLY VAL SER ALA ALA SEQRES 8 A 400 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 9 A 400 ASP ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 10 A 400 VAL GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU SEQRES 11 A 400 GLU LEU VAL ILE GLN ARG ASP GLY LYS ILE HIS ARG GLN SEQRES 12 A 400 ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL SEQRES 13 A 400 THR GLY ASP THR ASP LYS THR GLY THR MET VAL ARG PHE SEQRES 14 A 400 TRP PRO SER LYS SER THR PHE THR ASN VAL THR GLU PHE SEQRES 15 A 400 GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER SEQRES 16 A 400 PHE LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS SEQRES 17 A 400 ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY GLY SEQRES 18 A 400 ILE LYS ALA PHE VAL GLU TYR LEU ASN LYS ASN LYS THR SEQRES 19 A 400 PRO ILE HIS PRO ASN ILE PHE TYR PHE SER THR GLU LYS SEQRES 20 A 400 ASP GLY ILE GLY VAL GLU VAL ALA LEU GLN TRP ASN ASP SEQRES 21 A 400 GLY PHE GLN GLU ASN ILE TYR CYS PHE THR ASN ASN ILE SEQRES 22 A 400 PRO GLN ARG ASP GLY GLY THR HIS LEU ALA GLY PHE ARG SEQRES 23 A 400 ALA ALA MET THR ARG THR LEU ASN ALA TYR MET ASP LYS SEQRES 24 A 400 GLU GLY TYR SER LYS LYS ALA LYS VAL SER ALA THR GLY SEQRES 25 A 400 ASP ASP ALA ARG GLU GLY LEU ILE ALA VAL VAL SER VAL SEQRES 26 A 400 LYS VAL PRO ASP PRO LYS PHE SER SER GLN THR LYS ASP SEQRES 27 A 400 LYS LEU VAL SER SER GLU VAL LYS SER ALA VAL GLU GLN SEQRES 28 A 400 GLN MET ASN GLU LEU LEU SER GLU TYR LEU LEU GLU ASN SEQRES 29 A 400 PRO SER ASP ALA LYS ILE VAL VAL GLY LYS ILE ILE ASP SEQRES 30 A 400 ALA ALA ARG ALA ARG GLU ALA ALA ARG ARG ALA ARG GLU SEQRES 31 A 400 MET THR ARG ARG HIS HIS HIS HIS HIS HIS HET CL A 501 1 HET ATP A 502 31 HET GOL A 503 6 HET GOL A 504 6 HET PEG A 505 7 HET PEG A 506 7 HET PEG A 507 7 HETNAM CL CHLORIDE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL CL 1- FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 PEG 3(C4 H10 O3) FORMUL 9 HOH *335(H2 O) HELIX 1 AA1 ASP A 6 ILE A 10 5 5 HELIX 2 AA2 LEU A 16 ARG A 22 1 7 HELIX 3 AA3 ARG A 22 ILE A 27 1 6 HELIX 4 AA4 GLY A 33 ALA A 53 1 21 HELIX 5 AA5 SER A 89 VAL A 97 1 9 HELIX 6 AA6 VAL A 118 LEU A 126 1 9 HELIX 7 AA7 GLU A 183 ASN A 198 1 16 HELIX 8 AA8 GLY A 220 LYS A 231 1 12 HELIX 9 AA9 GLY A 279 GLU A 300 1 22 HELIX 10 AB1 TYR A 302 SER A 309 1 8 HELIX 11 AB2 THR A 311 GLU A 317 1 7 HELIX 12 AB3 SER A 343 ASN A 364 1 22 HELIX 13 AB4 ASN A 364 ARG A 393 1 30 SHEET 1 AA1 3 VAL A 149 PRO A 150 0 SHEET 2 AA1 3 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA1 3 ALA A 155 ASP A 159 -1 O THR A 157 N ILE A 140 SHEET 1 AA2 8 VAL A 149 PRO A 150 0 SHEET 2 AA2 8 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA2 8 SER A 127 ARG A 136 -1 N LEU A 132 O GLN A 143 SHEET 4 AA2 8 GLY A 164 PRO A 171 -1 O TRP A 170 N LYS A 129 SHEET 5 AA2 8 VAL A 69 ASP A 73 -1 N VAL A 69 O PHE A 169 SHEET 6 AA2 8 ASP A 58 ILE A 63 -1 N THR A 62 O SER A 70 SHEET 7 AA2 8 SER A 202 ASP A 207 1 O ARG A 204 N VAL A 61 SHEET 8 AA2 8 GLU A 213 PHE A 216 -1 O PHE A 216 N ILE A 203 SHEET 1 AA3 5 PHE A 241 LYS A 247 0 SHEET 2 AA3 5 ILE A 250 TRP A 258 -1 O VAL A 252 N THR A 245 SHEET 3 AA3 5 LEU A 319 LYS A 326 -1 O SER A 324 N GLU A 253 SHEET 4 AA3 5 ASN A 265 THR A 270 1 N TYR A 267 O ALA A 321 SHEET 5 AA3 5 ILE A 273 PRO A 274 -1 O ILE A 273 N THR A 270 SITE 1 AC1 4 ASP A 6 SER A 7 THR A 80 GLY A 81 SITE 1 AC2 32 TYR A 5 ILE A 10 GLU A 42 ASN A 46 SITE 2 AC2 32 GLU A 50 ASP A 73 ILE A 78 ILE A 94 SITE 3 AC2 32 ALA A 100 GLY A 101 GLY A 102 LYS A 103 SITE 4 AC2 32 TYR A 109 GLY A 114 LEU A 115 HIS A 116 SITE 5 AC2 32 GLY A 117 VAL A 118 GLY A 119 VAL A 120 SITE 6 AC2 32 THR A 165 LYS A 337 HOH A 602 HOH A 621 SITE 7 AC2 32 HOH A 653 HOH A 666 HOH A 686 HOH A 690 SITE 8 AC2 32 HOH A 716 HOH A 723 HOH A 739 HOH A 750 SITE 1 AC3 6 PHE A 41 ASP A 45 ARG A 190 PRO A 274 SITE 2 AC3 6 ARG A 276 HOH A 687 SITE 1 AC4 9 GLY A 24 MET A 25 TYR A 26 GLY A 28 SITE 2 AC4 9 SER A 333 GLN A 335 THR A 336 HOH A 612 SITE 3 AC4 9 HOH A 776 SITE 1 AC5 3 ARG A 20 HIS A 147 VAL A 149 SITE 1 AC6 4 PRO A 235 ILE A 236 PRO A 238 HOH A 857 SITE 1 AC7 8 THR A 72 ASP A 73 VAL A 133 GLN A 135 SITE 2 AC7 8 LYS A 162 GLY A 164 THR A 165 HOH A 853 CRYST1 87.112 140.545 79.105 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012641 0.00000