HEADER UNKNOWN FUNCTION 22-JAN-19 6J98 TITLE CRYSTAL STRUCTURE OF P8 FROM LACTOBACILLUS RHAMNOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: P8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 47715; SOURCE 4 GENE: B4Q13_10920, BGK71_11245, CCE29_09795, DBP98_10520, SOURCE 5 PY66_06245, PY91_09235; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LACTOBACILLUS RHAMNOSUS, P8, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.CHA,H.S.CHO REVDAT 2 06-NOV-24 6J98 1 LINK REVDAT 1 04-MAR-20 6J98 0 JRNL AUTH Y.J.CHA,H.S.CHO JRNL TITL CRYSTAL STRUCTURE OF P8 FROM LACTOBACILLUS RHAMNOSUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOON,Y.S.YOON,M.S.KIM,M.J.CHUNG,D.Y.YUM REMARK 1 TITL A PROBIOTIC PREPARATION DUOLAC-GOLD AMELIORATES DEXTRAN REMARK 1 TITL 2 SULPHATE SODIUM-INDUCED MOUSE COLITIS BY DOWNREGULATING THE REMARK 1 TITL 3 EXPRESSION OF IL-6. REMARK 1 REF TOXICOL RES V. 30 27 2014 REMARK 1 REFN ISSN 1976-8257 REMARK 1 PMID 24795796 REMARK 1 DOI 10.5487/TR.2014.30.1.027 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 626 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 588 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 840 ; 1.781 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1379 ; 1.586 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 74 ; 4.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;26.153 ;25.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 107 ;10.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 79 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 668 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 110 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 299 ; 1.648 ; 1.507 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 298 ; 1.600 ; 1.499 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 372 ; 2.388 ; 2.252 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 373 ; 2.392 ; 2.259 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 327 ; 2.628 ; 1.771 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 328 ; 2.624 ; 1.774 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 469 ; 3.718 ; 2.541 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 724 ; 4.600 ;19.057 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 714 ; 4.536 ;18.723 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9738 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 38.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M ZINC ACETATE DIHYDRATE, 20% REMARK 280 PEG3350, 5% N-DODECYL-N, N-DIMETHYLAMINE-N-OXIDE, MICROBATCH, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.50500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 20.43000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 20.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.25750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 20.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 20.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.75250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 20.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 20.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.25750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 20.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 20.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.75250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.50500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 234 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 74 REMARK 465 GLU A 75 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -1 N REMARK 620 2 GLY A -1 O 81.4 REMARK 620 3 GLU A 62 OE1 100.3 26.7 REMARK 620 4 GLU A 62 OE2 102.1 29.4 2.7 REMARK 620 5 HOH A 212 O 95.5 89.7 69.4 67.3 REMARK 620 6 HOH A 219 O 94.6 175.5 157.6 154.9 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD2 REMARK 620 2 ASP A 5 OD2 0.0 REMARK 620 3 GLU A 50 OE2 63.9 63.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 7 OE2 REMARK 620 2 GLU A 14 OE1 119.4 REMARK 620 3 LYS A 18 NZ 114.1 107.9 REMARK 620 4 HOH A 262 O 105.2 98.9 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 ASP A 35 OD2 54.5 REMARK 620 3 GLU A 39 OE2 104.3 136.8 REMARK 620 4 ASP A 60 OD2 46.2 8.3 133.7 REMARK 620 5 HOH A 249 O 141.3 89.3 92.9 97.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 107 DBREF1 6J98 A 1 73 UNP A0A0E3CPJ0_LACRH DBREF2 6J98 A A0A0E3CPJ0 1 73 SEQADV 6J98 GLY A -1 UNP A0A0E3CPJ EXPRESSION TAG SEQADV 6J98 SER A 0 UNP A0A0E3CPJ EXPRESSION TAG SEQADV 6J98 LEU A 74 UNP A0A0E3CPJ EXPRESSION TAG SEQADV 6J98 GLU A 75 UNP A0A0E3CPJ EXPRESSION TAG SEQRES 1 A 77 GLY SER MSE ALA THR VAL ASP PRO GLU LYS THR LEU PHE SEQRES 2 A 77 LEU ASP GLU PRO MSE ASN LYS VAL PHE ASP TRP SER ASN SEQRES 3 A 77 SER GLU ALA PRO VAL ARG ASP ALA LEU TRP ASP TYR TYR SEQRES 4 A 77 MSE GLU LYS ASN SER ARG ASP THR ILE LYS THR GLU GLU SEQRES 5 A 77 GLU MSE LYS PRO VAL LEU ASP MSE SER ASP ASP GLU VAL SEQRES 6 A 77 LYS ALA LEU ALA GLU LYS VAL LEU LYS LYS LEU GLU MODRES 6J98 MSE A 1 MET MODIFIED RESIDUE MODRES 6J98 MSE A 16 MET MODIFIED RESIDUE MODRES 6J98 MSE A 38 MET MODIFIED RESIDUE MODRES 6J98 MSE A 52 MET MODIFIED RESIDUE MODRES 6J98 MSE A 58 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 16 8 HET MSE A 38 8 HET MSE A 52 8 HET MSE A 58 8 HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET ZN A 104 1 HET ZN A 105 1 HET EDO A 106 4 HET GOL A 107 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN 5(ZN 2+) FORMUL 7 EDO C2 H6 O2 FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *77(H2 O) HELIX 1 AA1 LEU A 10 GLU A 14 5 5 HELIX 2 AA2 PRO A 15 PHE A 20 1 6 HELIX 3 AA3 PRO A 28 ASN A 41 1 14 HELIX 4 AA4 ASP A 44 LYS A 53 1 10 HELIX 5 AA5 PRO A 54 MSE A 58 5 5 HELIX 6 AA6 SER A 59 LEU A 71 1 13 LINK C SER A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C PRO A 15 N MSE A 16 1555 1555 1.31 LINK C MSE A 16 N ASN A 17 1555 1555 1.33 LINK C TYR A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N GLU A 39 1555 1555 1.32 LINK C GLU A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N LYS A 53 1555 1555 1.33 LINK C ASP A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N SER A 59 1555 1555 1.33 LINK N GLY A -1 ZN ZN A 101 1555 1555 2.10 LINK O GLY A -1 ZN ZN A 101 1555 1555 2.11 LINK OD2 ASP A 5 ZN ZN A 103 1555 1555 1.89 LINK OD2 ASP A 5 ZN ZN A 103 1555 7645 1.89 LINK OE2 GLU A 7 ZN ZN A 102 1555 1555 1.97 LINK OE1 GLU A 14 ZN ZN A 102 1555 1555 2.02 LINK NZ LYS A 18 ZN ZN A 102 1555 1555 2.21 LINK OD2 ASP A 31 ZN ZN A 105 1555 1555 2.20 LINK OD1 ASP A 35 ZN ZN A 104 1555 1555 2.45 LINK OD2 ASP A 35 ZN ZN A 104 1555 1555 2.14 LINK OE2 GLU A 39 ZN ZN A 104 1555 1555 1.94 LINK OE2 GLU A 50 ZN ZN A 103 1555 1455 2.02 LINK OD2 ASP A 60 ZN ZN A 104 1555 5544 1.91 LINK OE1 GLU A 62 ZN ZN A 101 1555 1455 2.25 LINK OE2 GLU A 62 ZN ZN A 101 1555 1455 2.15 LINK ZN ZN A 101 O HOH A 212 1555 5644 2.11 LINK ZN ZN A 101 O HOH A 219 1555 1655 2.16 LINK ZN ZN A 102 O HOH A 262 1555 1555 1.98 LINK ZN ZN A 104 O HOH A 249 1555 1555 2.16 SITE 1 AC1 4 GLY A -1 GLU A 62 HOH A 212 HOH A 219 SITE 1 AC2 4 GLU A 7 GLU A 14 LYS A 18 HOH A 262 SITE 1 AC3 2 ASP A 5 GLU A 50 SITE 1 AC4 4 ASP A 35 GLU A 39 ASP A 60 HOH A 249 SITE 1 AC5 2 ASP A 31 GLU A 68 SITE 1 AC6 7 ALA A 2 TYR A 37 GLU A 51 MSE A 58 SITE 2 AC6 7 LEU A 66 HOH A 217 HOH A 232 SITE 1 AC7 8 ASN A 17 PHE A 20 ASP A 21 SER A 23 SITE 2 AC7 8 ASN A 24 LYS A 72 HOH A 201 HOH A 213 CRYST1 40.860 40.860 107.010 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009345 0.00000 CONECT 1 609 CONECT 4 609 CONECT 7 11 CONECT 11 7 12 CONECT 12 11 13 15 CONECT 13 12 14 19 CONECT 14 13 CONECT 15 12 16 CONECT 16 15 17 CONECT 17 16 18 CONECT 18 17 CONECT 19 13 CONECT 45 611 CONECT 61 610 CONECT 120 610 CONECT 124 129 CONECT 129 124 130 CONECT 130 129 131 133 CONECT 131 130 132 137 CONECT 132 131 CONECT 133 130 134 CONECT 134 133 135 CONECT 135 134 136 CONECT 136 135 CONECT 137 131 CONECT 153 610 CONECT 260 613 CONECT 294 612 CONECT 295 612 CONECT 310 320 CONECT 320 310 321 CONECT 321 320 322 324 CONECT 322 321 323 328 CONECT 323 322 CONECT 324 321 325 CONECT 325 324 326 CONECT 326 325 327 CONECT 327 326 CONECT 328 322 CONECT 336 612 CONECT 430 437 CONECT 437 430 438 CONECT 438 437 439 441 CONECT 439 438 440 445 CONECT 440 439 CONECT 441 438 442 CONECT 442 441 443 CONECT 443 442 444 CONECT 444 443 CONECT 445 439 CONECT 478 484 CONECT 484 478 485 CONECT 485 484 486 488 CONECT 486 485 487 492 CONECT 487 486 CONECT 488 485 489 CONECT 489 488 490 CONECT 490 489 491 CONECT 491 490 CONECT 492 486 CONECT 609 1 4 CONECT 610 61 120 153 685 CONECT 611 45 CONECT 612 294 295 336 672 CONECT 613 260 CONECT 614 615 616 CONECT 615 614 CONECT 616 614 617 CONECT 617 616 CONECT 618 619 620 CONECT 619 618 CONECT 620 618 621 622 CONECT 621 620 CONECT 622 620 623 CONECT 623 622 CONECT 672 612 CONECT 685 610 MASTER 350 0 12 6 0 0 9 6 699 1 77 6 END