HEADER TRANSCRIPTION/DNA 22-JAN-19 6J9A TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA VAL1 IN COMPLEX WITH FLC DNA TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2,PROTEIN COMPND 5 VP1/ABI3-LIKE 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*TP*G)- COMPND 9 3'); COMPND 10 CHAIN: B; COMPND 11 SYNONYM: FLC CME DNA; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*C)- COMPND 15 3'); COMPND 16 CHAIN: C; COMPND 17 SYNONYM: FLC CME DNA; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: VAL1, HSI2, AT2G30470, T6B20.17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS FLOWERING TIME REGULATION, DNA-BINDING, GENE REGULATION, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HU,J.DU REVDAT 1 29-MAY-19 6J9A 0 JRNL AUTH Z.TAO,H.HU,X.LUO,B.JIA,J.DU,Y.HE JRNL TITL EMBRYONIC RESETTING OF THE PARENTAL VERNALIZED STATE BY TWO JRNL TITL 2 B3 DOMAIN TRANSCRIPTION FACTORS IN ARABIDOPSIS. JRNL REF NAT.PLANTS V. 5 424 2019 JRNL REFN ESSN 2055-0278 JRNL PMID 30962525 JRNL DOI 10.1038/S41477-019-0402-3 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 3 NUMBER OF REFLECTIONS : 5228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7327 - 3.6720 1.00 3505 183 0.1907 0.2190 REMARK 3 2 3.6720 - 2.9152 0.42 1478 62 0.2403 0.3177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1525 REMARK 3 ANGLE : 1.145 2190 REMARK 3 CHIRALITY : 0.079 242 REMARK 3 PLANARITY : 0.014 178 REMARK 3 DIHEDRAL : 31.373 610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0083 60.8837 46.8669 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.3589 REMARK 3 T33: 0.1422 T12: 0.0355 REMARK 3 T13: -0.0003 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.5383 L22: 0.7749 REMARK 3 L33: 1.1452 L12: -0.5442 REMARK 3 L13: -0.0024 L23: -0.4701 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0948 S13: 0.1125 REMARK 3 S21: 0.0588 S22: 0.0952 S23: 0.0490 REMARK 3 S31: -0.0479 S32: -0.1784 S33: 0.1718 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3151 47.2457 47.2007 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1256 REMARK 3 T33: 0.3092 T12: -0.0093 REMARK 3 T13: 0.1332 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 2.5980 L22: 0.1660 REMARK 3 L33: 3.4775 L12: -0.3497 REMARK 3 L13: -0.9506 L23: -0.4819 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: 0.0456 S13: -0.3179 REMARK 3 S21: -0.1070 S22: 0.1276 S23: -0.0588 REMARK 3 S31: 0.2361 S32: 0.3151 S33: 0.2631 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1261 59.0352 40.8946 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.2537 REMARK 3 T33: 0.3522 T12: -0.0716 REMARK 3 T13: -0.0232 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.9165 L22: 0.4064 REMARK 3 L33: 0.7063 L12: 0.8821 REMARK 3 L13: -0.0220 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0315 S13: 0.2858 REMARK 3 S21: -0.0417 S22: 0.1173 S23: 0.2327 REMARK 3 S31: -0.0702 S32: -0.1271 S33: 0.0369 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1778 52.6491 41.1801 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.2451 REMARK 3 T33: 0.2248 T12: 0.0130 REMARK 3 T13: 0.0821 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.5837 L22: 0.7283 REMARK 3 L33: 0.4465 L12: -0.3831 REMARK 3 L13: 0.4921 L23: -0.2007 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0878 S13: -0.0477 REMARK 3 S21: -0.0578 S22: -0.0198 S23: -0.0058 REMARK 3 S31: 0.0464 S32: 0.0694 S33: -0.1772 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1307 57.6626 41.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.2732 REMARK 3 T33: 0.1843 T12: -0.0479 REMARK 3 T13: -0.0522 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.9539 L22: 1.4276 REMARK 3 L33: 1.4499 L12: 0.6883 REMARK 3 L13: -0.9795 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: -0.2062 S13: 0.0410 REMARK 3 S21: 0.1608 S22: 0.2174 S23: -0.2512 REMARK 3 S31: 0.1327 S32: 0.4242 S33: -0.0833 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9658 67.4669 45.2142 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1660 REMARK 3 T33: 0.2297 T12: 0.0336 REMARK 3 T13: -0.0736 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.5066 L22: 4.5443 REMARK 3 L33: 2.5218 L12: 1.0356 REMARK 3 L13: -0.2440 L23: -0.0848 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.1501 S13: 0.2408 REMARK 3 S21: -0.0922 S22: 0.4072 S23: 0.0198 REMARK 3 S31: -0.0863 S32: -0.2820 S33: -0.2576 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1303 54.1096 51.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.7636 T22: 0.7867 REMARK 3 T33: 0.9030 T12: 0.1727 REMARK 3 T13: -0.0374 T23: 0.2544 REMARK 3 L TENSOR REMARK 3 L11: 0.2413 L22: 0.3798 REMARK 3 L33: 0.1660 L12: 0.3027 REMARK 3 L13: 0.2002 L23: 0.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.8688 S13: -0.1784 REMARK 3 S21: 0.9410 S22: -0.0628 S23: 0.3871 REMARK 3 S31: 0.1971 S32: -0.3711 S33: 0.0228 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5456 68.0979 46.7448 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.2790 REMARK 3 T33: 0.3060 T12: 0.1449 REMARK 3 T13: 0.0164 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 3.3981 L22: 4.1991 REMARK 3 L33: 1.5106 L12: 2.4495 REMARK 3 L13: -0.2981 L23: -0.6147 REMARK 3 S TENSOR REMARK 3 S11: -0.1904 S12: 0.0020 S13: 0.0638 REMARK 3 S21: -0.1996 S22: 0.1513 S23: -0.4501 REMARK 3 S31: -0.0833 S32: -0.0893 S33: 0.0013 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5487 58.1028 42.0117 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.6147 REMARK 3 T33: 0.2244 T12: -0.0527 REMARK 3 T13: 0.0376 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 0.2002 L22: 1.5193 REMARK 3 L33: 2.1210 L12: -0.1486 REMARK 3 L13: 0.6187 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.2096 S13: -0.1695 REMARK 3 S21: -0.3876 S22: 0.1433 S23: -0.3614 REMARK 3 S31: 0.1258 S32: 0.3322 S33: -0.0342 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7167 56.1285 38.7136 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.6486 REMARK 3 T33: 0.2281 T12: -0.1030 REMARK 3 T13: -0.1059 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 0.9476 L22: 0.9612 REMARK 3 L33: 1.7796 L12: 0.2846 REMARK 3 L13: 0.5858 L23: 0.0395 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.2493 S13: -0.2860 REMARK 3 S21: -0.1355 S22: 0.3320 S23: -0.2191 REMARK 3 S31: 0.2261 S32: 0.4814 S33: -0.2956 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 1.07200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LICL, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.69650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.04475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.34825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 272 REMARK 465 PRO A 273 REMARK 465 LYS A 274 REMARK 465 TYR A 275 REMARK 465 THR A 276 REMARK 465 ASP A 277 REMARK 465 LYS A 278 REMARK 465 GLU A 279 REMARK 465 VAL A 280 REMARK 465 GLN A 281 REMARK 465 GLN A 282 REMARK 465 ILE A 283 REMARK 465 SER A 284 REMARK 465 GLY A 285 REMARK 465 ASN A 286 REMARK 465 LEU A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 ASN A 290 REMARK 465 ASN A 397 REMARK 465 ALA A 398 REMARK 465 GLY A 399 REMARK 465 ASP A 400 REMARK 465 MSE A 401 REMARK 465 GLN A 402 REMARK 465 GLY A 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA B 1 O5' REMARK 470 DA C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 384 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 DT B 2 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 351 92.46 -160.05 REMARK 500 ASN A 353 -2.43 71.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 6J9A A 273 403 UNP Q8W4L5 VAL1_ARATH 273 403 DBREF 6J9A B 1 15 PDB 6J9A 6J9A 1 15 DBREF 6J9A C 1 15 PDB 6J9A 6J9A 1 15 SEQADV 6J9A SER A 272 UNP Q8W4L5 EXPRESSION TAG SEQRES 1 A 132 SER PRO LYS TYR THR ASP LYS GLU VAL GLN GLN ILE SER SEQRES 2 A 132 GLY ASN LEU ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS SEQRES 3 A 132 THR LEU SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU SEQRES 4 A 132 VAL LEU PRO LYS ALA CYS ALA GLU ALA TYR PHE PRO PRO SEQRES 5 A 132 ILE SER GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP SEQRES 6 A 132 VAL ARG GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP SEQRES 7 A 132 PRO ASN ASN ASN SER ARG MSE TYR VAL LEU GLU GLY VAL SEQRES 8 A 132 THR PRO CYS ILE GLN SER MSE MSE LEU GLN ALA GLY ASP SEQRES 9 A 132 THR VAL THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU SEQRES 10 A 132 ILE MSE GLY SER ARG LYS ALA ALA ASN ALA GLY ASP MSE SEQRES 11 A 132 GLN GLY SEQRES 1 B 15 DA DT DT DC DT DG DC DA DT DG DG DA DT SEQRES 2 B 15 DT DG SEQRES 1 C 15 DA DA DT DC DC DA DT DG DC DA DG DA DA SEQRES 2 C 15 DT DC MODRES 6J9A MSE A 356 MET MODIFIED RESIDUE MODRES 6J9A MSE A 369 MET MODIFIED RESIDUE MODRES 6J9A MSE A 370 MET MODIFIED RESIDUE MODRES 6J9A MSE A 390 MET MODIFIED RESIDUE HET MSE A 356 8 HET MSE A 369 8 HET MSE A 370 8 HET MSE A 390 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 AA1 SER A 300 GLY A 305 1 6 HELIX 2 AA2 PRO A 313 TYR A 320 1 8 HELIX 3 AA3 VAL A 362 MSE A 369 1 8 SHEET 1 AA1 7 PRO A 293 THR A 298 0 SHEET 2 AA1 7 THR A 376 ARG A 381 -1 O VAL A 377 N LYS A 297 SHEET 3 AA1 7 LEU A 388 ARG A 393 -1 O GLY A 391 N THR A 378 SHEET 4 AA1 7 ILE A 330 GLN A 335 1 N GLN A 335 O MSE A 390 SHEET 5 AA1 7 GLU A 341 ASN A 351 -1 O PHE A 344 N LEU A 332 SHEET 6 AA1 7 SER A 354 GLU A 360 -1 O VAL A 358 N ARG A 347 SHEET 7 AA1 7 ARG A 309 LEU A 312 -1 N LEU A 310 O LEU A 359 LINK C ARG A 355 N MSE A 356 1555 1555 1.33 LINK C MSE A 356 N TYR A 357 1555 1555 1.34 LINK C SER A 368 N MSE A 369 1555 1555 1.33 LINK C MSE A 369 N MSE A 370 1555 1555 1.34 LINK C MSE A 370 N LEU A 371 1555 1555 1.34 LINK C ILE A 389 N MSE A 390 1555 1555 1.33 LINK C MSE A 390 N GLY A 391 1555 1555 1.33 CRYST1 59.157 59.157 97.393 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010268 0.00000