HEADER TRANSCRIPTION/DNA 22-JAN-19 6J9C TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA TRANSCRIPTION FACTOR LEC2- TITLE 2 DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: PROTEIN LEAFY COTYLEDON 2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*T)- COMPND 8 3'); COMPND 9 CHAIN: B, E; COMPND 10 FRAGMENT: FLC CME DNA; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*CP*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*T)- COMPND 14 3'); COMPND 15 CHAIN: C, F; COMPND 16 FRAGMENT: FLC CME DNA; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: LEC2, AT1G28300, F3H9.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS FLOWERING TIME REGULATION, B3 DOMAIN, DNA-BINDING, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HU,J.DU REVDAT 2 22-NOV-23 6J9C 1 REMARK REVDAT 1 29-MAY-19 6J9C 0 JRNL AUTH Z.TAO,H.HU,X.LUO,B.JIA,J.DU,Y.HE JRNL TITL EMBRYONIC RESETTING OF THE PARENTAL VERNALIZED STATE BY TWO JRNL TITL 2 B3 DOMAIN TRANSCRIPTION FACTORS IN ARABIDOPSIS. JRNL REF NAT.PLANTS V. 5 424 2019 JRNL REFN ESSN 2055-0278 JRNL PMID 30962525 JRNL DOI 10.1038/S41477-019-0402-3 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 67.8 REMARK 3 NUMBER OF REFLECTIONS : 8746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5978 - 4.4738 0.99 4190 210 0.2193 0.2453 REMARK 3 2 4.4738 - 3.5513 0.84 3376 201 0.2331 0.2699 REMARK 3 3 3.5513 - 3.1024 0.18 734 35 0.2199 0.2593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3199 REMARK 3 ANGLE : 1.156 4555 REMARK 3 CHIRALITY : 0.073 493 REMARK 3 PLANARITY : 0.007 378 REMARK 3 DIHEDRAL : 29.407 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 212 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5601 30.6969 -19.0277 REMARK 3 T TENSOR REMARK 3 T11: 0.5718 T22: 0.1920 REMARK 3 T33: 0.5438 T12: -0.0374 REMARK 3 T13: 0.3014 T23: -0.1471 REMARK 3 L TENSOR REMARK 3 L11: 3.2442 L22: 6.0068 REMARK 3 L33: 5.1243 L12: 2.1871 REMARK 3 L13: -0.3388 L23: -5.0313 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.0216 S13: 0.0933 REMARK 3 S21: 0.3568 S22: -0.2297 S23: 0.9224 REMARK 3 S31: -0.5140 S32: -0.3983 S33: 0.1372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 218 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6818 31.2435 -35.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.8142 T22: 0.3649 REMARK 3 T33: 0.5684 T12: -0.1911 REMARK 3 T13: 0.4030 T23: 0.1639 REMARK 3 L TENSOR REMARK 3 L11: 2.3887 L22: 0.3054 REMARK 3 L33: 2.4853 L12: -0.4061 REMARK 3 L13: -1.6965 L23: 0.3797 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: 0.2792 S13: 0.2314 REMARK 3 S21: -0.3555 S22: 0.1624 S23: -0.2443 REMARK 3 S31: -0.4134 S32: 0.4039 S33: 0.1818 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 238 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9176 25.4508 -31.8584 REMARK 3 T TENSOR REMARK 3 T11: 1.0109 T22: 0.2880 REMARK 3 T33: 0.8687 T12: -0.1669 REMARK 3 T13: 0.0533 T23: 0.0954 REMARK 3 L TENSOR REMARK 3 L11: 1.5591 L22: 1.2854 REMARK 3 L33: 0.2633 L12: -1.4142 REMARK 3 L13: -0.2602 L23: 0.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.0639 S13: -0.0573 REMARK 3 S21: -0.3264 S22: 0.1594 S23: -0.0170 REMARK 3 S31: -0.0649 S32: -0.0092 S33: -0.1163 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 247 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8389 35.0774 -36.0252 REMARK 3 T TENSOR REMARK 3 T11: 1.0333 T22: 0.5567 REMARK 3 T33: 0.6719 T12: 0.0322 REMARK 3 T13: 0.0314 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 5.1561 REMARK 3 L33: 5.1005 L12: -0.0410 REMARK 3 L13: 0.0407 L23: -5.1285 REMARK 3 S TENSOR REMARK 3 S11: -0.4153 S12: 0.5166 S13: 0.4053 REMARK 3 S21: -0.9852 S22: 0.4870 S23: 0.9682 REMARK 3 S31: 0.2511 S32: -0.4725 S33: -0.1091 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 253 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8899 38.3034 -24.3074 REMARK 3 T TENSOR REMARK 3 T11: 0.6617 T22: 0.2492 REMARK 3 T33: 0.4442 T12: -0.1928 REMARK 3 T13: 0.1785 T23: 0.1075 REMARK 3 L TENSOR REMARK 3 L11: 1.7651 L22: 1.8800 REMARK 3 L33: 1.0711 L12: 0.8229 REMARK 3 L13: 0.9645 L23: -0.1023 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: -0.1258 S13: 0.2202 REMARK 3 S21: 0.3886 S22: -0.0856 S23: 0.0699 REMARK 3 S31: -0.2201 S32: 0.0017 S33: 0.0059 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 260 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1099 35.3307 -21.4908 REMARK 3 T TENSOR REMARK 3 T11: 0.8550 T22: 0.1540 REMARK 3 T33: 0.3860 T12: 0.0105 REMARK 3 T13: 0.3792 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 3.8248 L22: 8.7706 REMARK 3 L33: 5.0574 L12: 1.4237 REMARK 3 L13: 0.8050 L23: 0.4903 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: -0.1010 S13: 0.3796 REMARK 3 S21: 0.0510 S22: -0.0830 S23: -0.0794 REMARK 3 S31: -0.9434 S32: -0.0067 S33: 0.0547 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2699 30.1829 -48.6901 REMARK 3 T TENSOR REMARK 3 T11: 1.7571 T22: 0.4731 REMARK 3 T33: 0.7976 T12: 0.0346 REMARK 3 T13: 0.5889 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 0.5127 L22: 2.8503 REMARK 3 L33: 0.4580 L12: -0.5967 REMARK 3 L13: -0.2077 L23: 1.1377 REMARK 3 S TENSOR REMARK 3 S11: 0.2275 S12: 0.1410 S13: 0.2243 REMARK 3 S21: -0.5877 S22: -0.3798 S23: 0.1424 REMARK 3 S31: -0.6599 S32: -0.1625 S33: -0.0759 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1928 33.4443 -47.9740 REMARK 3 T TENSOR REMARK 3 T11: 1.5422 T22: 0.5977 REMARK 3 T33: 0.8244 T12: -0.0415 REMARK 3 T13: 0.4871 T23: 0.2724 REMARK 3 L TENSOR REMARK 3 L11: 0.2409 L22: 2.7993 REMARK 3 L33: 2.9663 L12: 0.0493 REMARK 3 L13: 0.1002 L23: -2.8379 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.3291 S13: -0.2557 REMARK 3 S21: -0.9651 S22: -0.2624 S23: -0.8122 REMARK 3 S31: 0.5290 S32: 0.4682 S33: 0.6139 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6303 11.3024 -11.7529 REMARK 3 T TENSOR REMARK 3 T11: -0.0217 T22: -0.0361 REMARK 3 T33: 0.4845 T12: 0.3293 REMARK 3 T13: 0.1884 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.9546 L22: 0.3426 REMARK 3 L33: 0.2157 L12: -0.5752 REMARK 3 L13: -0.4479 L23: 0.2712 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: 0.0173 S13: -0.0643 REMARK 3 S21: 0.0280 S22: -0.0225 S23: -0.0238 REMARK 3 S31: -0.0607 S32: 0.0925 S33: -0.0198 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8329 17.9714 -13.9602 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.2145 REMARK 3 T33: 0.3659 T12: -0.0762 REMARK 3 T13: 0.0128 T23: 0.1021 REMARK 3 L TENSOR REMARK 3 L11: 1.2031 L22: 2.1041 REMARK 3 L33: 4.7642 L12: -1.5404 REMARK 3 L13: -1.8417 L23: 2.8692 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: -0.0845 S13: 0.2395 REMARK 3 S21: -0.3299 S22: 0.0254 S23: -0.3375 REMARK 3 S31: -0.7929 S32: 0.8915 S33: -0.1719 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1689 15.8475 -9.6478 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.0118 REMARK 3 T33: 0.2643 T12: -0.0146 REMARK 3 T13: 0.1599 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 3.9062 L22: 2.1715 REMARK 3 L33: 6.8108 L12: 0.3703 REMARK 3 L13: -3.2533 L23: -0.9411 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: -0.2533 S13: -0.1085 REMARK 3 S21: -0.1557 S22: 0.1877 S23: 0.0550 REMARK 3 S31: -0.0922 S32: -0.0734 S33: -0.1078 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7839 16.6514 -20.3954 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.0098 REMARK 3 T33: 0.3300 T12: 0.0199 REMARK 3 T13: -0.1650 T23: 0.1272 REMARK 3 L TENSOR REMARK 3 L11: 2.0915 L22: 5.1059 REMARK 3 L33: 2.0672 L12: -0.2559 REMARK 3 L13: 0.4762 L23: -0.7230 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.2205 S13: 0.0063 REMARK 3 S21: -0.5947 S22: -0.1545 S23: 0.0890 REMARK 3 S31: -0.2269 S32: 0.0061 S33: -0.0502 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7337 10.7956 -19.6942 REMARK 3 T TENSOR REMARK 3 T11: 0.6054 T22: 0.6024 REMARK 3 T33: 0.4598 T12: 0.0018 REMARK 3 T13: 0.3876 T23: -0.1262 REMARK 3 L TENSOR REMARK 3 L11: 7.2226 L22: 8.5630 REMARK 3 L33: 2.3328 L12: 6.5475 REMARK 3 L13: 1.9825 L23: 1.4608 REMARK 3 S TENSOR REMARK 3 S11: -0.2642 S12: -0.6273 S13: -0.0334 REMARK 3 S21: 0.0982 S22: 0.0702 S23: -0.3295 REMARK 3 S31: -0.2361 S32: 0.2613 S33: 0.2366 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7623 18.9556 -2.6282 REMARK 3 T TENSOR REMARK 3 T11: 0.2257 T22: -0.1637 REMARK 3 T33: 0.8528 T12: 0.0008 REMARK 3 T13: 0.2304 T23: -0.1190 REMARK 3 L TENSOR REMARK 3 L11: 0.4715 L22: 0.7646 REMARK 3 L33: 1.4553 L12: -0.5444 REMARK 3 L13: 0.0771 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: 0.1623 S12: 0.1066 S13: -0.3791 REMARK 3 S21: -0.0112 S22: -0.0655 S23: 0.2447 REMARK 3 S31: 0.1786 S32: -0.1300 S33: 0.2013 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4149 15.6894 -0.3121 REMARK 3 T TENSOR REMARK 3 T11: 0.3768 T22: -0.3311 REMARK 3 T33: 0.9310 T12: -0.2340 REMARK 3 T13: 0.2616 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.7122 L22: 0.6287 REMARK 3 L33: 0.6540 L12: 0.4939 REMARK 3 L13: -0.0244 L23: -0.3725 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: -0.1701 S13: 0.1090 REMARK 3 S21: 0.3582 S22: -0.1413 S23: 0.1570 REMARK 3 S31: -0.3609 S32: 0.0744 S33: -0.0134 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 160 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6808 39.6205 -20.2219 REMARK 3 T TENSOR REMARK 3 T11: 0.5698 T22: 0.2202 REMARK 3 T33: 0.1923 T12: -0.2566 REMARK 3 T13: -0.0557 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 0.8403 L22: 0.8541 REMARK 3 L33: 5.4476 L12: -0.0515 REMARK 3 L13: 0.2383 L23: 2.1262 REMARK 3 S TENSOR REMARK 3 S11: -0.3824 S12: 0.4472 S13: 0.2263 REMARK 3 S21: -1.1204 S22: 0.2669 S23: 0.0215 REMARK 3 S31: -0.8794 S32: 0.3656 S33: 0.0975 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7028 31.1719 -40.7115 REMARK 3 T TENSOR REMARK 3 T11: 1.2084 T22: 0.3367 REMARK 3 T33: 0.3948 T12: -0.0238 REMARK 3 T13: 0.1275 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 1.3395 L22: 5.1003 REMARK 3 L33: 1.7917 L12: -2.1100 REMARK 3 L13: -1.2729 L23: 3.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: 0.4366 S13: 0.2965 REMARK 3 S21: -0.7930 S22: 0.0823 S23: -0.0029 REMARK 3 S31: -0.4131 S32: -0.0623 S33: 0.0150 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 185 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4586 38.2168 -34.2861 REMARK 3 T TENSOR REMARK 3 T11: 1.0348 T22: 0.5729 REMARK 3 T33: 0.7721 T12: -0.3426 REMARK 3 T13: 0.2133 T23: 0.1465 REMARK 3 L TENSOR REMARK 3 L11: 5.4227 L22: 0.8478 REMARK 3 L33: 2.0134 L12: 0.2939 REMARK 3 L13: 0.2215 L23: -0.0985 REMARK 3 S TENSOR REMARK 3 S11: 0.3928 S12: 0.1826 S13: 1.0893 REMARK 3 S21: -0.2926 S22: -0.2558 S23: -0.9088 REMARK 3 S31: -0.4195 S32: 0.2817 S33: -0.1054 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 196 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3283 31.7730 -30.0137 REMARK 3 T TENSOR REMARK 3 T11: 0.8909 T22: 0.4422 REMARK 3 T33: 1.0422 T12: -0.0717 REMARK 3 T13: 0.1788 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 5.0269 L22: 2.9882 REMARK 3 L33: 9.2563 L12: 3.8659 REMARK 3 L13: -1.9308 L23: -1.8462 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0365 S13: -0.2289 REMARK 3 S21: -0.5292 S22: -0.0894 S23: -0.9135 REMARK 3 S31: 0.3690 S32: 0.4075 S33: 0.0725 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 206 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4627 28.1143 -23.1869 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.2851 REMARK 3 T33: 0.4003 T12: -0.0609 REMARK 3 T13: 0.1769 T23: 0.2024 REMARK 3 L TENSOR REMARK 3 L11: 5.1611 L22: 3.2659 REMARK 3 L33: 2.7482 L12: -3.2855 REMARK 3 L13: -3.3945 L23: 1.8841 REMARK 3 S TENSOR REMARK 3 S11: -0.1355 S12: -0.2163 S13: -0.2422 REMARK 3 S21: 0.0442 S22: -0.1288 S23: -0.0460 REMARK 3 S31: 0.1505 S32: 0.3032 S33: 0.2164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8746 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6J9A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM HEPES PH 7.5, 15% PEG REMARK 280 20000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.53650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.53650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 159 REMARK 465 SER A 160 REMARK 465 THR A 161 REMARK 465 PHE A 162 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MET D 159 REMARK 465 SER D 272 REMARK 465 GLY D 273 REMARK 465 LEU D 274 REMARK 465 GLU D 275 REMARK 465 HIS D 276 REMARK 465 HIS D 277 REMARK 465 HIS D 278 REMARK 465 HIS D 279 REMARK 465 HIS D 280 REMARK 465 HIS D 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 6 O3' DC C 6 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 229 -129.34 56.16 REMARK 500 SER A 231 -143.43 -117.49 REMARK 500 ALA A 267 68.62 -153.67 REMARK 500 ASN A 271 -67.58 63.42 REMARK 500 SER A 272 -103.55 58.19 REMARK 500 ASN D 164 65.78 73.74 REMARK 500 ASN D 229 -129.13 57.53 REMARK 500 SER D 231 -143.00 -116.13 REMARK 500 LYS D 262 5.69 81.38 REMARK 500 ALA D 267 -61.91 -125.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 6J9C A 160 273 UNP Q1PFR7 LEC2_ARATH 160 273 DBREF 6J9C B 1 15 PDB 6J9C 6J9C 1 15 DBREF 6J9C C 1 15 PDB 6J9C 6J9C 1 15 DBREF 6J9C D 160 273 UNP Q1PFR7 LEC2_ARATH 160 273 DBREF 6J9C E 1 15 PDB 6J9C 6J9C 1 15 DBREF 6J9C F 1 15 PDB 6J9C 6J9C 1 15 SEQADV 6J9C MET A 159 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C LEU A 274 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C GLU A 275 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS A 276 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS A 277 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS A 278 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS A 279 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS A 280 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS A 281 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C MET D 159 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C LEU D 274 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C GLU D 275 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS D 276 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS D 277 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS D 278 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS D 279 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS D 280 UNP Q1PFR7 EXPRESSION TAG SEQADV 6J9C HIS D 281 UNP Q1PFR7 EXPRESSION TAG SEQRES 1 A 123 MET SER THR PHE ASP ASN LYS LYS LEU ARG VAL LEU CYS SEQRES 2 A 123 GLU LYS GLU LEU LYS ASN SER ASP VAL GLY SER LEU GLY SEQRES 3 A 123 ARG ILE VAL LEU PRO LYS ARG ASP ALA GLU ALA ASN LEU SEQRES 4 A 123 PRO LYS LEU SER ASP LYS GLU GLY ILE VAL VAL GLN MET SEQRES 5 A 123 ARG ASP VAL PHE SER MET GLN SER TRP SER PHE LYS TYR SEQRES 6 A 123 LYS PHE TRP SER ASN ASN LYS SER ARG MET TYR VAL LEU SEQRES 7 A 123 GLU ASN THR GLY GLU PHE VAL LYS GLN ASN GLY ALA GLU SEQRES 8 A 123 ILE GLY ASP PHE LEU THR ILE TYR GLU ASP GLU SER LYS SEQRES 9 A 123 ASN LEU TYR PHE ALA MET ASN GLY ASN SER GLY LEU GLU SEQRES 10 A 123 HIS HIS HIS HIS HIS HIS SEQRES 1 B 15 DG DA DT DT DC DT DG DC DA DT DG DG DA SEQRES 2 B 15 DT DT SEQRES 1 C 15 DC DA DA DT DC DC DA DT DG DC DA DG DA SEQRES 2 C 15 DA DT SEQRES 1 D 123 MET SER THR PHE ASP ASN LYS LYS LEU ARG VAL LEU CYS SEQRES 2 D 123 GLU LYS GLU LEU LYS ASN SER ASP VAL GLY SER LEU GLY SEQRES 3 D 123 ARG ILE VAL LEU PRO LYS ARG ASP ALA GLU ALA ASN LEU SEQRES 4 D 123 PRO LYS LEU SER ASP LYS GLU GLY ILE VAL VAL GLN MET SEQRES 5 D 123 ARG ASP VAL PHE SER MET GLN SER TRP SER PHE LYS TYR SEQRES 6 D 123 LYS PHE TRP SER ASN ASN LYS SER ARG MET TYR VAL LEU SEQRES 7 D 123 GLU ASN THR GLY GLU PHE VAL LYS GLN ASN GLY ALA GLU SEQRES 8 D 123 ILE GLY ASP PHE LEU THR ILE TYR GLU ASP GLU SER LYS SEQRES 9 D 123 ASN LEU TYR PHE ALA MET ASN GLY ASN SER GLY LEU GLU SEQRES 10 D 123 HIS HIS HIS HIS HIS HIS SEQRES 1 E 15 DG DA DT DT DC DT DG DC DA DT DG DG DA SEQRES 2 E 15 DT DT SEQRES 1 F 15 DC DA DA DT DC DC DA DT DG DC DA DG DA SEQRES 2 F 15 DA DT HELIX 1 AA1 PRO A 189 LEU A 197 1 9 HELIX 2 AA2 THR A 239 GLY A 247 1 9 HELIX 3 AA3 PRO D 189 ASN D 196 1 8 HELIX 4 AA4 GLY D 240 GLY D 247 1 8 SHEET 1 AA1 2 LEU A 167 GLU A 174 0 SHEET 2 AA1 2 PHE A 253 ASP A 259 -1 O ILE A 256 N CYS A 171 SHEET 1 AA2 5 ARG A 185 LEU A 188 0 SHEET 2 AA2 5 SER A 231 GLU A 237 -1 O LEU A 236 N ILE A 186 SHEET 3 AA2 5 SER A 218 ASN A 228 -1 N TRP A 226 O MET A 233 SHEET 4 AA2 5 ILE A 206 ARG A 211 -1 N VAL A 208 O PHE A 221 SHEET 5 AA2 5 TYR A 265 PHE A 266 1 O TYR A 265 N ARG A 211 SHEET 1 AA3 7 LEU D 167 GLU D 174 0 SHEET 2 AA3 7 PHE D 253 ASP D 259 -1 O LEU D 254 N LYS D 173 SHEET 3 AA3 7 LEU D 264 PHE D 266 -1 O TYR D 265 N TYR D 257 SHEET 4 AA3 7 ILE D 206 ASP D 212 1 N ARG D 211 O PHE D 266 SHEET 5 AA3 7 SER D 218 ASN D 228 -1 O PHE D 221 N VAL D 208 SHEET 6 AA3 7 SER D 231 GLU D 237 -1 O VAL D 235 N LYS D 224 SHEET 7 AA3 7 ARG D 185 VAL D 187 -1 N ILE D 186 O LEU D 236 CRYST1 71.073 96.601 99.263 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010074 0.00000