HEADER TRANSFERASE 23-JAN-19 6J9J TITLE CRYSTAL STRUCTURE OF SESTD2 IN COMPLEX WITH H3.3S31PHK36M PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING COMPND 5 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- COMPND 6 METHYLTRANSFERASE 3A,PROTEIN-LYSINE N-METHYLTRANSFERASE SETD2,SET COMPND 7 DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP; COMPND 8 EC: 2.1.1.43,2.1.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: H3.3S31PHK36M(29-42); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YANG,H.T.LI REVDAT 3 12-AUG-20 6J9J 1 JRNL REVDAT 2 05-AUG-20 6J9J 1 JRNL REVDAT 1 26-FEB-20 6J9J 0 JRNL AUTH A.ARMACHE,S.YANG,A.MARTINEZ DE PAZ,L.E.ROBBINS,C.DURMAZ, JRNL AUTH 2 J.Q.CHEONG,A.RAVISHANKAR,A.W.DAMAN,D.J.AHIMOVIC,T.KLEVORN, JRNL AUTH 3 Y.YUE,T.ARSLAN,S.LIN,T.PANCHENKO,J.HRIT,M.WANG,S.THUDIUM, JRNL AUTH 4 B.A.GARCIA,E.KORB,K.J.ARMACHE,S.B.ROTHBART,S.B.HAKE, JRNL AUTH 5 C.D.ALLIS,H.LI,S.Z.JOSEFOWICZ JRNL TITL HISTONE H3.3 PHOSPHORYLATION AMPLIFIES STIMULATION-INDUCED JRNL TITL 2 TRANSCRIPTION. JRNL REF NATURE V. 583 852 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32699416 JRNL DOI 10.1038/S41586-020-2533-0 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6J9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM THIOCYANATE, 0.1M BIS REMARK 280 -TRIS PROPANE,20% PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.55600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.70600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.50700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.70600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.55600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.50700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1487 REMARK 465 ASN A 1488 REMARK 465 LYS A 1489 REMARK 465 SER A 1490 REMARK 465 HIS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASP A 1493 REMARK 465 ILE A 1494 REMARK 465 LYS A 1495 REMARK 465 ARG A 1496 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1499 -174.92 -68.66 REMARK 500 LYS A1559 26.27 -155.62 REMARK 500 VAL A1576 -66.62 -93.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1499 SG REMARK 620 2 CYS A1501 SG 103.3 REMARK 620 3 CYS A1516 SG 108.6 106.0 REMARK 620 4 CYS A1520 SG 118.0 108.0 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1516 SG REMARK 620 2 CYS A1529 SG 117.5 REMARK 620 3 CYS A1533 SG 100.0 116.7 REMARK 620 4 CYS A1539 SG 111.0 97.0 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1631 SG REMARK 620 2 CYS A1678 SG 112.6 REMARK 620 3 CYS A1680 SG 105.9 106.3 REMARK 620 4 CYS A1685 SG 110.9 108.6 112.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 1804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1808 DBREF 6J9J A 1447 1703 UNP Q9BYW2 SETD2_HUMAN 1447 1703 DBREF 6J9J B 29 42 PDB 6J9J 6J9J 29 42 SEQADV 6J9J ALA A 1486 UNP Q9BYW2 LYS 1486 CONFLICT SEQRES 1 A 257 PRO SER CYS VAL MET ASP ASP PHE ARG ASP PRO GLN ARG SEQRES 2 A 257 TRP LYS GLU CYS ALA LYS GLN GLY LYS MET PRO CYS TYR SEQRES 3 A 257 PHE ASP LEU ILE GLU GLU ASN VAL TYR LEU THR GLU ARG SEQRES 4 A 257 ALA LYS ASN LYS SER HIS ARG ASP ILE LYS ARG MET GLN SEQRES 5 A 257 CYS GLU CYS THR PRO LEU SER LYS ASP GLU ARG ALA GLN SEQRES 6 A 257 GLY GLU ILE ALA CYS GLY GLU ASP CYS LEU ASN ARG LEU SEQRES 7 A 257 LEU MET ILE GLU CYS SER SER ARG CYS PRO ASN GLY ASP SEQRES 8 A 257 TYR CYS SER ASN ARG ARG PHE GLN ARG LYS GLN HIS ALA SEQRES 9 A 257 ASP VAL GLU VAL ILE LEU THR GLU LYS LYS GLY TRP GLY SEQRES 10 A 257 LEU ARG ALA ALA LYS ASP LEU PRO SER ASN THR PHE VAL SEQRES 11 A 257 LEU GLU TYR CYS GLY GLU VAL LEU ASP HIS LYS GLU PHE SEQRES 12 A 257 LYS ALA ARG VAL LYS GLU TYR ALA ARG ASN LYS ASN ILE SEQRES 13 A 257 HIS TYR TYR PHE MET ALA LEU LYS ASN ASP GLU ILE ILE SEQRES 14 A 257 ASP ALA THR GLN LYS GLY ASN CYS SER ARG PHE MET ASN SEQRES 15 A 257 HIS SER CYS GLU PRO ASN CYS GLU THR GLN LYS TRP THR SEQRES 16 A 257 VAL ASN GLY GLN LEU ARG VAL GLY PHE PHE THR THR LYS SEQRES 17 A 257 LEU VAL PRO SER GLY SER GLU LEU THR PHE ASP TYR GLN SEQRES 18 A 257 PHE GLN ARG TYR GLY LYS GLU ALA GLN LYS CYS PHE CYS SEQRES 19 A 257 GLY SER ALA ASN CYS ARG GLY TYR LEU GLY GLY GLU ASN SEQRES 20 A 257 ARG VAL SER ILE ARG ALA ALA GLY GLY LYS SEQRES 1 B 14 ALA PRO SEP THR GLY GLY VAL MET LYS PRO HIS ARG TYR SEQRES 2 B 14 ARG HET SEP B 31 10 HET ZN A1801 1 HET ZN A1802 1 HET ZN A1803 1 HET SAH A1804 26 HET SCN A1805 3 HET SCN A1806 3 HET SCN A1807 3 HET SCN A1808 3 HETNAM SEP PHOSPHOSERINE HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM SCN THIOCYANATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 ZN 3(ZN 2+) FORMUL 6 SAH C14 H20 N6 O5 S FORMUL 7 SCN 4(C N S 1-) FORMUL 11 HOH *260(H2 O) HELIX 1 AA1 ASP A 1452 ARG A 1455 5 4 HELIX 2 AA2 ASP A 1456 GLN A 1466 1 11 HELIX 3 AA3 SER A 1505 GLN A 1511 1 7 HELIX 4 AA4 CYS A 1520 LEU A 1525 1 6 HELIX 5 AA5 ASN A 1535 CYS A 1539 5 5 HELIX 6 AA6 ASP A 1585 ASN A 1599 1 15 HELIX 7 AA7 ASN A 1622 MET A 1627 5 6 HELIX 8 AA8 SER A 1696 GLY A 1701 1 6 SHEET 1 AA1 5 SER A1448 VAL A1450 0 SHEET 2 AA1 5 VAL A1552 LEU A1556 -1 O VAL A1554 N CYS A1449 SHEET 3 AA1 5 TRP A1562 ALA A1566 -1 O GLY A1563 N ILE A1555 SHEET 4 AA1 5 GLU A1661 PHE A1664 -1 O LEU A1662 N LEU A1564 SHEET 5 AA1 5 ASN A1628 HIS A1629 1 N ASN A1628 O PHE A1664 SHEET 1 AA2 2 ASP A1474 LEU A1475 0 SHEET 2 AA2 2 LYS A1620 GLY A1621 1 O GLY A1621 N ASP A1474 SHEET 1 AA3 6 VAL A1480 TYR A1481 0 SHEET 2 AA3 6 GLU A1582 LEU A1584 1 O VAL A1583 N VAL A1480 SHEET 3 AA3 6 GLU A1613 ASP A1616 -1 O ILE A1614 N LEU A1584 SHEET 4 AA3 6 PHE A1606 LYS A1610 -1 N MET A1607 O ILE A1615 SHEET 5 AA3 6 GLY B 34 MET B 36 1 O MET B 36 N PHE A1606 SHEET 6 AA3 6 GLN A1669 ARG A1670 -1 N GLN A1669 O VAL B 35 SHEET 1 AA4 3 PHE A1575 GLU A1578 0 SHEET 2 AA4 3 GLN A1645 THR A1652 -1 O PHE A1650 N VAL A1576 SHEET 3 AA4 3 CYS A1635 VAL A1642 -1 N VAL A1642 O GLN A1645 SHEET 1 AA5 2 GLN A1676 LYS A1677 0 SHEET 2 AA5 2 TYR A1688 LEU A1689 -1 O LEU A1689 N GLN A1676 LINK C PRO B 30 N SEP B 31 1555 1555 1.34 LINK C SEP B 31 N THR B 32 1555 1555 1.33 LINK SG CYS A1499 ZN ZN A1801 1555 1555 2.31 LINK SG CYS A1501 ZN ZN A1801 1555 1555 2.45 LINK SG CYS A1516 ZN ZN A1801 1555 1555 2.45 LINK SG CYS A1516 ZN ZN A1802 1555 1555 2.37 LINK SG CYS A1520 ZN ZN A1801 1555 1555 2.35 LINK SG CYS A1529 ZN ZN A1802 1555 1555 2.49 LINK SG CYS A1533 ZN ZN A1802 1555 1555 2.30 LINK SG CYS A1539 ZN ZN A1802 1555 1555 2.32 LINK SG CYS A1631 ZN ZN A1803 1555 1555 2.48 LINK SG CYS A1678 ZN ZN A1803 1555 1555 2.33 LINK SG CYS A1680 ZN ZN A1803 1555 1555 2.34 LINK SG CYS A1685 ZN ZN A1803 1555 1555 2.32 SITE 1 AC1 4 CYS A1499 CYS A1501 CYS A1516 CYS A1520 SITE 1 AC2 4 CYS A1516 CYS A1529 CYS A1533 CYS A1539 SITE 1 AC3 4 CYS A1631 CYS A1678 CYS A1680 CYS A1685 SITE 1 AC4 18 LYS A1560 GLY A1561 TRP A1562 HIS A1603 SITE 2 AC4 18 TYR A1604 TYR A1605 ARG A1625 PHE A1626 SITE 3 AC4 18 ASN A1628 HIS A1629 TYR A1666 GLN A1676 SITE 4 AC4 18 LYS A1677 CYS A1678 PHE A1679 HOH A1932 SITE 5 AC4 18 HOH A1956 HOH A1993 SITE 1 AC5 5 THR A1637 LYS A1639 HOH A1904 PRO B 38 SITE 2 AC5 5 HIS B 39 SITE 1 AC6 3 GLU A1558 LYS A1559 LYS A1560 SITE 1 AC7 2 HIS A1629 PHE A1668 SITE 1 AC8 2 ASP A1453 CYS A1463 CRYST1 61.112 77.014 77.412 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012918 0.00000