HEADER TRANSFERASE 24-JAN-19 6J9V TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI GAMBIENSE GLYCEROL KINASE TITLE 2 COMPLEX WITH ADP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI GAMBIENSE; SOURCE 3 ORGANISM_TAXID: 31285; SOURCE 4 GENE: GK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3+PRARE2); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS TRYPANOSOMA, GLYCEROL KINASE, SUGAR KINASE SUPERFAMILY, TRANSFERASE, KEYWDS 2 GLYCOSOME EXPDTA X-RAY DIFFRACTION AUTHOR E.O.BALOGUN,T.CHISHIMA,M.ICHINOSE,D.K.INAOKA,Y.KIDO,B.IBRAHIM,H.DE AUTHOR 2 KONING,J.H.MCKERROW,Y.WATANABE,T.NOZAKI,P.A.M.MICHELS,S.HARADA, AUTHOR 3 K.KITA,T.SHIBA REVDAT 2 22-NOV-23 6J9V 1 REMARK REVDAT 1 29-JAN-20 6J9V 0 JRNL AUTH E.O.BALOGUN,T.CHISHIMA,M.ICHINOSE,D.K.INAOKA,W.KIDO, JRNL AUTH 2 B.IBRAHIM,H.DE KONING,J.H.MCKERROW,Y.WATANABE,T.NOZAKI, JRNL AUTH 3 P.A.M.MICHELS,S.HARADA,K.KITA,T.SHIBA JRNL TITL REACTION MECHANISM OF THE REVERSE REACTION OF AFRICAN HUMAN JRNL TITL 2 TRYPANOSOMES GLYCEROL KINASE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.388 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8151 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7802 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11035 ; 1.763 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17942 ; 1.055 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1024 ; 7.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 328 ;38.417 ;22.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1402 ;18.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;20.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1239 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9102 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1860 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4102 ; 5.496 ; 6.987 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4101 ; 5.486 ; 6.986 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5124 ; 7.362 ;10.480 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5125 ; 7.361 ;10.481 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4049 ; 6.325 ; 7.661 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4049 ; 6.325 ; 7.661 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5912 ; 9.008 ;11.239 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8949 ;11.019 ;56.559 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8950 ;11.019 ;56.560 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WXL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-18% PEG 400, 0.1M HEPES, 11% 1,6 REMARK 280 -HEXANEDIOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.20800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.04850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.47400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.04850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.47400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 LEU A 512 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 LEU B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 245 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 69 100.56 -162.32 REMARK 500 GLU A 85 -40.25 81.25 REMARK 500 GLU A 226 171.19 163.65 REMARK 500 ASN A 243 -59.98 74.68 REMARK 500 ASP A 306 61.33 37.48 REMARK 500 ALA A 320 -93.96 -108.31 REMARK 500 ALA A 358 47.25 -91.78 REMARK 500 LEU A 363 -133.08 -117.97 REMARK 500 ALA A 364 -139.56 60.50 REMARK 500 SER A 487 47.55 -151.41 REMARK 500 TRP A 509 -54.29 -147.47 REMARK 500 ALA A 510 163.38 -46.97 REMARK 500 ASP B 20 -163.51 -100.92 REMARK 500 GLN B 23 36.60 71.20 REMARK 500 SER B 71 36.58 -93.65 REMARK 500 PHE B 72 -127.96 -88.84 REMARK 500 ARG B 73 -47.79 136.14 REMARK 500 GLU B 85 -48.51 80.59 REMARK 500 THR B 86 122.16 -33.66 REMARK 500 LYS B 95 38.80 70.29 REMARK 500 PRO B 153 -61.46 -29.29 REMARK 500 LYS B 212 60.32 74.03 REMARK 500 ASN B 243 -24.04 75.15 REMARK 500 ALA B 320 -85.47 -104.45 REMARK 500 SER B 335 -60.13 -121.70 REMARK 500 ALA B 358 59.37 -90.55 REMARK 500 LEU B 363 -136.43 -107.34 REMARK 500 ALA B 364 -143.38 69.46 REMARK 500 GLU B 448 42.07 -59.27 REMARK 500 SER B 487 43.33 -165.46 REMARK 500 SER B 489 125.84 -174.73 REMARK 500 ALA B 490 -46.01 -29.35 REMARK 500 TRP B 509 -52.96 -153.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 363 ALA B 364 147.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 703 DBREF 6J9V A 1 512 UNP D3KVM3 D3KVM3_TRYBG 1 512 DBREF 6J9V B 1 512 UNP D3KVM3 D3KVM3_TRYBG 1 512 SEQADV 6J9V GLY A -5 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V ILE A -4 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V ASP A -3 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V PRO A -2 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V PHE A -1 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V THR A 0 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V GLY B -5 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V ILE B -4 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V ASP B -3 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V PRO B -2 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V PHE B -1 UNP D3KVM3 EXPRESSION TAG SEQADV 6J9V THR B 0 UNP D3KVM3 EXPRESSION TAG SEQRES 1 A 518 GLY ILE ASP PRO PHE THR MET LYS TYR VAL GLY SER ILE SEQRES 2 A 518 ASP GLN GLY THR THR SER THR ARG PHE ILE ILE PHE ASP SEQRES 3 A 518 GLU ARG GLN ARG PRO VAL SER VAL HIS GLN VAL PRO HIS SEQRES 4 A 518 THR GLN HIS THR PRO HIS PRO GLY TRP LEU GLU HIS ASP SEQRES 5 A 518 PRO MET GLU ILE PHE ARG SER ALA CYS LYS CYS MET SER SEQRES 6 A 518 VAL ALA ILE ALA LYS LEU ARG GLN LYS ASP ALA SER PHE SEQRES 7 A 518 ARG LYS ILE GLU ALA ILE GLY ILE THR ASN GLN ARG GLU SEQRES 8 A 518 THR THR VAL ALA TRP ASP ARG VAL THR LYS GLU PRO LEU SEQRES 9 A 518 CYS TYR ALA PRO VAL TRP ASN ASP LEU ARG THR TYR ASP SEQRES 10 A 518 ILE THR LYS LYS VAL THR ALA GLU LEU GLY GLY GLY ASP SEQRES 11 A 518 SER MET PHE ALA SER LYS ILE THR GLY LEU PRO VAL SER SEQRES 12 A 518 THR TYR PHE ALA ALA PHE LYS MET ARG TRP MET LEU GLU SEQRES 13 A 518 ASN VAL PRO ALA VAL ALA ASP ALA CYS ARG ARG GLY THR SEQRES 14 A 518 LEU CYS PHE GLY THR ILE ASP THR TRP LEU MET TYR LYS SEQRES 15 A 518 LEU SER GLY GLY LYS ALA PHE VAL THR ASP VAL THR ASN SEQRES 16 A 518 ALA SER ARG THR PHE LEU MET ASP LEU ARG THR ARG LYS SEQRES 17 A 518 TRP SER PRO GLU LEU CYS GLU LYS LEU LYS ILE PRO MET SEQRES 18 A 518 GLU THR LEU PRO GLU ILE ARG SER ASN SER GLU LEU PHE SEQRES 19 A 518 GLY TYR VAL GLU THR ASP GLU CYS GLY VAL ALA ALA ALA SEQRES 20 A 518 LEU ASN GLU ARG THR PRO ILE MET GLY SER ILE GLY ASP SEQRES 21 A 518 GLN GLN SER ALA LEU PHE GLY ASN MET CYS PHE GLU LYS SEQRES 22 A 518 GLY GLU ALA LYS ASN THR TYR GLY THR GLY CYS PHE LEU SEQRES 23 A 518 LEU MET ASN VAL GLY GLU GLU ALA ARG PHE SER LYS HIS SEQRES 24 A 518 GLY LEU LEU SER THR VAL GLY PHE GLN VAL GLY ARG ASP SEQRES 25 A 518 GLY PRO CYS TYR TYR ALA LEU GLU GLY ALA ILE ALA CYS SEQRES 26 A 518 ALA GLY ALA THR VAL GLU TRP MET ARG ARG ASN MET ASN SEQRES 27 A 518 LEU PHE SER HIS ILE THR GLU CYS GLU LYS LEU ALA ARG SEQRES 28 A 518 SER VAL PRO GLY THR GLN GLY ILE VAL PHE VAL PRO ALA SEQRES 29 A 518 PHE SER GLY LEU LEU ALA PRO TYR TRP ASP PRO SER ALA SEQRES 30 A 518 ARG GLY THR ILE VAL GLY MET THR LEU LYS THR THR ARG SEQRES 31 A 518 ALA HIS VAL ILE ARG ALA ALA LEU GLN ALA ILE ALA LEU SEQRES 32 A 518 GLN LEU ASN ASP VAL VAL GLY SER MET LYS ARG ASP ALA SEQRES 33 A 518 GLY LEU ASN LEU SER SER LEU ARG VAL ASP GLY GLY LEU SEQRES 34 A 518 SER LYS ASN GLY LEU LEU MET GLU ILE GLN ALA SER LEU SEQRES 35 A 518 LEU GLY VAL ASP ILE LEU VAL PRO SER MET HIS GLU THR SEQRES 36 A 518 THR ALA LEU GLY ALA ALA LEU CYS ALA GLY LEU ALA ALA SEQRES 37 A 518 GLY VAL TRP THR SER LEU GLU GLU VAL LYS ALA VAL SER SEQRES 38 A 518 ARG ARG GLU ASN SER TRP LYS THR VAL SER PRO SER GLY SEQRES 39 A 518 SER ALA MET GLU ARG GLU ALA MET ILE ALA GLU TRP ARG SEQRES 40 A 518 GLU ALA LEU LYS ARG THR LYS TRP ALA LYS LEU SEQRES 1 B 518 GLY ILE ASP PRO PHE THR MET LYS TYR VAL GLY SER ILE SEQRES 2 B 518 ASP GLN GLY THR THR SER THR ARG PHE ILE ILE PHE ASP SEQRES 3 B 518 GLU ARG GLN ARG PRO VAL SER VAL HIS GLN VAL PRO HIS SEQRES 4 B 518 THR GLN HIS THR PRO HIS PRO GLY TRP LEU GLU HIS ASP SEQRES 5 B 518 PRO MET GLU ILE PHE ARG SER ALA CYS LYS CYS MET SER SEQRES 6 B 518 VAL ALA ILE ALA LYS LEU ARG GLN LYS ASP ALA SER PHE SEQRES 7 B 518 ARG LYS ILE GLU ALA ILE GLY ILE THR ASN GLN ARG GLU SEQRES 8 B 518 THR THR VAL ALA TRP ASP ARG VAL THR LYS GLU PRO LEU SEQRES 9 B 518 CYS TYR ALA PRO VAL TRP ASN ASP LEU ARG THR TYR ASP SEQRES 10 B 518 ILE THR LYS LYS VAL THR ALA GLU LEU GLY GLY GLY ASP SEQRES 11 B 518 SER MET PHE ALA SER LYS ILE THR GLY LEU PRO VAL SER SEQRES 12 B 518 THR TYR PHE ALA ALA PHE LYS MET ARG TRP MET LEU GLU SEQRES 13 B 518 ASN VAL PRO ALA VAL ALA ASP ALA CYS ARG ARG GLY THR SEQRES 14 B 518 LEU CYS PHE GLY THR ILE ASP THR TRP LEU MET TYR LYS SEQRES 15 B 518 LEU SER GLY GLY LYS ALA PHE VAL THR ASP VAL THR ASN SEQRES 16 B 518 ALA SER ARG THR PHE LEU MET ASP LEU ARG THR ARG LYS SEQRES 17 B 518 TRP SER PRO GLU LEU CYS GLU LYS LEU LYS ILE PRO MET SEQRES 18 B 518 GLU THR LEU PRO GLU ILE ARG SER ASN SER GLU LEU PHE SEQRES 19 B 518 GLY TYR VAL GLU THR ASP GLU CYS GLY VAL ALA ALA ALA SEQRES 20 B 518 LEU ASN GLU ARG THR PRO ILE MET GLY SER ILE GLY ASP SEQRES 21 B 518 GLN GLN SER ALA LEU PHE GLY ASN MET CYS PHE GLU LYS SEQRES 22 B 518 GLY GLU ALA LYS ASN THR TYR GLY THR GLY CYS PHE LEU SEQRES 23 B 518 LEU MET ASN VAL GLY GLU GLU ALA ARG PHE SER LYS HIS SEQRES 24 B 518 GLY LEU LEU SER THR VAL GLY PHE GLN VAL GLY ARG ASP SEQRES 25 B 518 GLY PRO CYS TYR TYR ALA LEU GLU GLY ALA ILE ALA CYS SEQRES 26 B 518 ALA GLY ALA THR VAL GLU TRP MET ARG ARG ASN MET ASN SEQRES 27 B 518 LEU PHE SER HIS ILE THR GLU CYS GLU LYS LEU ALA ARG SEQRES 28 B 518 SER VAL PRO GLY THR GLN GLY ILE VAL PHE VAL PRO ALA SEQRES 29 B 518 PHE SER GLY LEU LEU ALA PRO TYR TRP ASP PRO SER ALA SEQRES 30 B 518 ARG GLY THR ILE VAL GLY MET THR LEU LYS THR THR ARG SEQRES 31 B 518 ALA HIS VAL ILE ARG ALA ALA LEU GLN ALA ILE ALA LEU SEQRES 32 B 518 GLN LEU ASN ASP VAL VAL GLY SER MET LYS ARG ASP ALA SEQRES 33 B 518 GLY LEU ASN LEU SER SER LEU ARG VAL ASP GLY GLY LEU SEQRES 34 B 518 SER LYS ASN GLY LEU LEU MET GLU ILE GLN ALA SER LEU SEQRES 35 B 518 LEU GLY VAL ASP ILE LEU VAL PRO SER MET HIS GLU THR SEQRES 36 B 518 THR ALA LEU GLY ALA ALA LEU CYS ALA GLY LEU ALA ALA SEQRES 37 B 518 GLY VAL TRP THR SER LEU GLU GLU VAL LYS ALA VAL SER SEQRES 38 B 518 ARG ARG GLU ASN SER TRP LYS THR VAL SER PRO SER GLY SEQRES 39 B 518 SER ALA MET GLU ARG GLU ALA MET ILE ALA GLU TRP ARG SEQRES 40 B 518 GLU ALA LEU LYS ARG THR LYS TRP ALA LYS LEU HET ADP A 701 27 HET GOL A 702 6 HET ADP B 701 27 HET GOL B 702 6 HET GOL B 703 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *7(H2 O) HELIX 1 AA1 ASP A 46 ASP A 69 1 24 HELIX 2 AA2 THR A 109 GLY A 122 1 14 HELIX 3 AA3 ALA A 128 GLY A 133 1 6 HELIX 4 AA4 PHE A 140 VAL A 152 1 13 HELIX 5 AA5 VAL A 152 ARG A 161 1 10 HELIX 6 AA6 ILE A 169 SER A 178 1 10 HELIX 7 AA7 VAL A 187 SER A 191 1 5 HELIX 8 AA8 SER A 204 LYS A 212 1 9 HELIX 9 AA9 PRO A 214 LEU A 218 5 5 HELIX 10 AB1 ASP A 234 CYS A 236 5 3 HELIX 11 AB2 GLY A 237 ASN A 243 1 7 HELIX 12 AB3 ASP A 254 ASN A 262 1 9 HELIX 13 AB4 ALA A 320 ASN A 330 1 11 HELIX 14 AB5 ILE A 337 SER A 346 1 10 HELIX 15 AB6 THR A 383 GLY A 411 1 29 HELIX 16 AB7 GLY A 421 LYS A 425 5 5 HELIX 17 AB8 ASN A 426 GLY A 438 1 13 HELIX 18 AB9 GLU A 448 ALA A 462 1 15 HELIX 19 AC1 SER A 467 ASN A 479 1 13 HELIX 20 AC2 SER A 489 ARG A 506 1 18 HELIX 21 AC3 ASP B 46 ASP B 69 1 24 HELIX 22 AC4 THR B 109 LEU B 120 1 12 HELIX 23 AC5 ALA B 128 GLY B 133 1 6 HELIX 24 AC6 PHE B 140 VAL B 152 1 13 HELIX 25 AC7 VAL B 152 ARG B 161 1 10 HELIX 26 AC8 ILE B 169 SER B 178 1 10 HELIX 27 AC9 VAL B 187 SER B 191 1 5 HELIX 28 AD1 SER B 204 LYS B 212 1 9 HELIX 29 AD2 PRO B 214 LEU B 218 5 5 HELIX 30 AD3 GLY B 237 ASN B 243 1 7 HELIX 31 AD4 ASP B 254 ASN B 262 1 9 HELIX 32 AD5 ALA B 320 ASN B 330 1 11 HELIX 33 AD6 THR B 338 SER B 346 1 9 HELIX 34 AD7 THR B 383 GLY B 411 1 29 HELIX 35 AD8 GLY B 421 LYS B 425 5 5 HELIX 36 AD9 ASN B 426 GLY B 438 1 13 HELIX 37 AE1 GLU B 448 ALA B 462 1 15 HELIX 38 AE2 SER B 467 ASN B 479 1 13 HELIX 39 AE3 SER B 489 LYS B 505 1 17 SHEET 1 AA1 6 PRO A 25 PRO A 32 0 SHEET 2 AA1 6 SER A 13 ASP A 20 -1 N ILE A 18 O SER A 27 SHEET 3 AA1 6 TYR A 3 GLN A 9 -1 N VAL A 4 O PHE A 19 SHEET 4 AA1 6 ALA A 77 ASN A 82 1 O THR A 81 N ILE A 7 SHEET 5 AA1 6 PRO A 247 GLY A 253 1 O ILE A 252 N ILE A 80 SHEET 6 AA1 6 SER A 225 TYR A 230 -1 N GLY A 229 O ILE A 248 SHEET 1 AA2 3 GLN A 35 HIS A 36 0 SHEET 2 AA2 3 GLU A 44 HIS A 45 -1 O GLU A 44 N HIS A 36 SHEET 3 AA2 3 ALA A 101 PRO A 102 -1 O ALA A 101 N HIS A 45 SHEET 1 AA3 2 THR A 87 ASP A 91 0 SHEET 2 AA3 2 LEU A 164 THR A 168 -1 O GLY A 167 N VAL A 88 SHEET 1 AA4 2 VAL A 184 ASP A 186 0 SHEET 2 AA4 2 GLU A 220 ARG A 222 1 O ARG A 222 N THR A 185 SHEET 1 AA5 2 MET A 196 ASP A 197 0 SHEET 2 AA5 2 LYS A 202 TRP A 203 -1 O LYS A 202 N ASP A 197 SHEET 1 AA6 7 LEU A 296 GLN A 302 0 SHEET 2 AA6 7 CYS A 309 ILE A 317 -1 O TYR A 310 N PHE A 301 SHEET 3 AA6 7 CYS A 278 GLY A 285 -1 N LEU A 280 O GLY A 315 SHEET 4 AA6 7 GLU A 269 TYR A 274 -1 N LYS A 271 O LEU A 281 SHEET 5 AA6 7 SER A 416 ASP A 420 1 O ASP A 420 N TYR A 274 SHEET 6 AA6 7 ILE A 441 PRO A 444 1 O LEU A 442 N VAL A 419 SHEET 7 AA6 7 TRP A 481 VAL A 484 -1 O LYS A 482 N VAL A 443 SHEET 1 AA7 4 VAL A 354 VAL A 356 0 SHEET 2 AA7 4 GLY A 373 MET A 378 -1 O THR A 374 N VAL A 356 SHEET 3 AA7 4 GLY B 373 MET B 378 -1 O GLY B 373 N MET A 378 SHEET 4 AA7 4 VAL B 354 PRO B 357 -1 N VAL B 356 O THR B 374 SHEET 1 AA8 6 PRO B 25 PRO B 32 0 SHEET 2 AA8 6 SER B 13 PHE B 19 -1 N ILE B 18 O VAL B 26 SHEET 3 AA8 6 VAL B 4 GLN B 9 -1 N VAL B 4 O PHE B 19 SHEET 4 AA8 6 ALA B 77 ASN B 82 1 O GLY B 79 N GLY B 5 SHEET 5 AA8 6 PRO B 247 GLY B 253 1 O GLY B 250 N ILE B 80 SHEET 6 AA8 6 SER B 225 TYR B 230 -1 N GLY B 229 O ILE B 248 SHEET 1 AA9 2 GLU B 44 HIS B 45 0 SHEET 2 AA9 2 ALA B 101 PRO B 102 -1 O ALA B 101 N HIS B 45 SHEET 1 AB1 3 GLU B 96 PRO B 97 0 SHEET 2 AB1 3 THR B 87 ASP B 91 -1 N ASP B 91 O GLU B 96 SHEET 3 AB1 3 LEU B 164 THR B 168 -1 O GLY B 167 N VAL B 88 SHEET 1 AB2 2 VAL B 184 ASP B 186 0 SHEET 2 AB2 2 GLU B 220 ARG B 222 1 O GLU B 220 N THR B 185 SHEET 1 AB3 2 MET B 196 ASP B 197 0 SHEET 2 AB3 2 LYS B 202 TRP B 203 -1 O LYS B 202 N ASP B 197 SHEET 1 AB4 7 LEU B 296 GLN B 302 0 SHEET 2 AB4 7 CYS B 309 ILE B 317 -1 O ALA B 312 N THR B 298 SHEET 3 AB4 7 CYS B 278 GLY B 285 -1 N LEU B 280 O GLY B 315 SHEET 4 AB4 7 GLU B 269 TYR B 274 -1 N GLU B 269 O ASN B 283 SHEET 5 AB4 7 SER B 416 ASP B 420 1 O ASP B 420 N TYR B 274 SHEET 6 AB4 7 ILE B 441 PRO B 444 1 O LEU B 442 N VAL B 419 SHEET 7 AB4 7 TRP B 481 VAL B 484 -1 O LYS B 482 N VAL B 443 SITE 1 AC1 7 GLY A 275 THR A 276 GLY A 321 ILE A 337 SITE 2 AC1 7 GLY A 422 LEU A 423 LYS A 425 SITE 1 AC2 5 ARG A 84 GLU A 85 TRP A 104 ASP A 254 SITE 2 AC2 5 GLN A 255 SITE 1 AC3 10 HIS A 29 GLN A 30 VAL A 31 PRO A 32 SITE 2 AC3 10 LYS A 56 MET B 1 TYR B 3 ASP B 20 SITE 3 AC3 10 ARG B 22 LYS B 68 SITE 1 AC4 6 ARG B 84 GLU B 85 TRP B 104 ASP B 254 SITE 2 AC4 6 GLN B 255 PHE B 279 SITE 1 AC5 3 THR B 11 THR B 12 SER B 13 CRYST1 62.416 120.948 154.097 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016022 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006489 0.00000