HEADER SUGAR BINDING PROTEIN 25-JAN-19 6JB4 TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER ALPHA-GLYCOSIDE-BINDING MUTANT TITLE 2 PROTEIN W287A IN COMPLEX WITH MALTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-GLYBP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 ATCC: 27634; SOURCE 7 GENE: TTHA0356; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBOHYDRATE-BINDINGSITE, ALPHA-GLYCOSIDE-BINDING PROTEIN, LIGAND KEYWDS 2 SELECTION, MULTI-SUBSTRATE TRANSPORTER, SUGAR REPLACEMENT, VENUS KEYWDS 3 FLY-TRAP MECHANISM, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,P.GOGOI REVDAT 4 22-NOV-23 6JB4 1 HETSYN REVDAT 3 29-JUL-20 6JB4 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 06-MAY-20 6JB4 1 JRNL REVDAT 1 30-OCT-19 6JB4 0 JRNL AUTH M.CHANDRAVANSHI,P.GOGOI,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC CORRELATION ILLUMINATES THE JRNL TITL 2 SELECTIVE TRANSPORT MECHANISM OF DISACCHARIDE JRNL TITL 3 ALPHA-GLYCOSIDES THROUGH ABC TRANSPORTER. JRNL REF FEBS J. V. 287 1576 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31608555 JRNL DOI 10.1111/FEBS.15093 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.149 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3386 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3083 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4608 ; 1.876 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7124 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 415 ; 5.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;34.831 ;22.754 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;12.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;17.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3802 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 73.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6J9W REMARK 200 REMARK 200 REMARK: TETRAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M CITRIC ACID, 0.06 M BIS-TRIS REMARK 280 PROPANE, 20% PEG 3350, PH 6.4, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.77000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.56500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.38500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.56500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.15500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.38500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.15500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 657 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1023 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1192 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 2 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 771 O HOH A 942 1.66 REMARK 500 O HOH A 1014 O HOH A 1181 1.92 REMARK 500 OD2 ASP A 303 O HOH A 601 1.93 REMARK 500 O HOH A 1179 O HOH A 1186 1.93 REMARK 500 O HOH A 833 O HOH A 1085 1.95 REMARK 500 O HOH A 699 O HOH A 991 2.01 REMARK 500 O HOH A 959 O HOH A 1064 2.03 REMARK 500 O HOH A 834 O HOH A 975 2.08 REMARK 500 O HOH A 610 O HOH A 1007 2.09 REMARK 500 OE1 GLU A 312 O HOH A 602 2.15 REMARK 500 O HOH A 992 O HOH A 1092 2.16 REMARK 500 O HOH A 978 O HOH A 980 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 639 O HOH A 689 7555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 39 CZ TYR A 39 OH 0.111 REMARK 500 THR A 46 CB THR A 46 CG2 -0.209 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 41 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR A 53 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 320 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 320 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 PHE A 343 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 344 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 178.17 65.77 REMARK 500 ILE A 192 -61.71 75.52 REMARK 500 ARG A 219 -78.23 -120.82 REMARK 500 PRO A 357 43.16 -84.82 REMARK 500 HIS A 403 -3.63 80.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1192 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1193 DISTANCE = 5.97 ANGSTROMS DBREF 6JB4 A 1 402 UNP Q5SLD7 Q5SLD7_THET8 28 429 SEQADV 6JB4 ALA A 287 UNP Q5SLD7 TRP 314 ENGINEERED MUTATION SEQADV 6JB4 HIS A 403 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JB4 HIS A 404 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JB4 HIS A 405 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JB4 HIS A 406 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JB4 HIS A 407 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JB4 HIS A 408 UNP Q5SLD7 EXPRESSION TAG SEQRES 1 A 408 GLN SER GLY PRO VAL ILE ARG VAL ALA GLY ASP SER THR SEQRES 2 A 408 ALA VAL GLY GLU GLY GLY ARG TRP MET LYS GLU MET VAL SEQRES 3 A 408 GLU ALA TRP GLY LYS LYS THR GLY THR ARG VAL GLU TYR SEQRES 4 A 408 ILE ASP SER PRO ALA ASP THR ASN ASP ARG LEU ALA LEU SEQRES 5 A 408 TYR GLN GLN TYR TRP ALA ALA ARG SER PRO ASP VAL ASP SEQRES 6 A 408 VAL TYR MET ILE ASP VAL ILE TRP PRO GLY ILE VAL ALA SEQRES 7 A 408 PRO HIS ALA LEU ASP LEU LYS PRO TYR LEU THR GLU ALA SEQRES 8 A 408 GLU LEU LYS GLU PHE PHE PRO ARG ILE VAL GLN ASN ASN SEQRES 9 A 408 THR ILE ARG GLY LYS LEU THR SER LEU PRO PHE PHE THR SEQRES 10 A 408 ASP ALA GLY ILE LEU TYR TYR ARG LYS ASP LEU LEU GLU SEQRES 11 A 408 LYS TYR GLY TYR THR SER PRO PRO ARG THR TRP ASN GLU SEQRES 12 A 408 LEU GLU GLN MET ALA GLU ARG VAL MET GLU GLY GLU ARG SEQRES 13 A 408 ARG ALA GLY ASN ARG ASP PHE TRP GLY PHE VAL PHE GLN SEQRES 14 A 408 GLY LYS PRO TYR GLU GLY LEU THR CYS ASP ALA LEU GLU SEQRES 15 A 408 TRP ILE TYR SER HIS GLY GLY GLY ARG ILE VAL GLU PRO SEQRES 16 A 408 ASP GLY THR ILE SER VAL ASN ASN GLY ARG ALA ALA LEU SEQRES 17 A 408 ALA LEU ASN ARG ALA HIS GLY TRP VAL GLY ARG ILE ALA SEQRES 18 A 408 PRO GLN GLY VAL THR SER TYR ALA GLU GLU GLU ALA ARG SEQRES 19 A 408 ASN VAL TRP GLN GLN GLY ASN SER LEU PHE MET ARG ASN SEQRES 20 A 408 TRP PRO TYR ALA TYR ALA LEU GLY GLN ALA GLU GLY SER SEQRES 21 A 408 PRO ILE ARG GLY LYS PHE GLY VAL THR VAL LEU PRO LYS SEQRES 22 A 408 ALA SER ALA ASP ALA PRO ASN ALA ALA THR LEU GLY GLY SEQRES 23 A 408 ALA GLN LEU MET VAL SER ALA TYR SER ARG TYR PRO LYS SEQRES 24 A 408 GLU ALA VAL ASP LEU VAL LYS TYR LEU ALA SER TYR GLU SEQRES 25 A 408 VAL GLN LYS ASP ASN ALA VAL ARG LEU SER ARG LEU PRO SEQRES 26 A 408 THR ARG PRO ALA LEU TYR THR ASP ARG ASP VAL LEU ALA SEQRES 27 A 408 ARG ASN PRO TRP PHE ARG ASP LEU LEU PRO VAL PHE GLN SEQRES 28 A 408 ASN ALA VAL SER ARG PRO SER ASP VAL ALA GLY ALA ARG SEQRES 29 A 408 TYR ASN GLN VAL SER GLU ALA ILE TRP THR GLU VAL HIS SEQRES 30 A 408 SER VAL LEU THR GLY ARG LYS LYS GLY GLU GLN ALA VAL SEQRES 31 A 408 ARG ASP LEU GLU ALA ARG ILE ARG ARG ILE LEU ARG HIS SEQRES 32 A 408 HIS HIS HIS HIS HIS HET GLC B 1 12 HET GLC B 2 11 HET CIT A 502 13 HET GOL A 503 6 HET EDO A 504 4 HET EDO A 505 4 HET CO2 A 506 3 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CO2 CARBON DIOXIDE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 CIT C6 H8 O7 FORMUL 4 GOL C3 H8 O3 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 CO2 C O2 FORMUL 8 HOH *593(H2 O) HELIX 1 AA1 GLU A 17 GLY A 34 1 18 HELIX 2 AA2 ASP A 45 ALA A 59 1 15 HELIX 3 AA3 TRP A 73 ALA A 78 1 6 HELIX 4 AA4 PRO A 79 ALA A 81 5 3 HELIX 5 AA5 LEU A 84 LEU A 88 5 5 HELIX 6 AA6 THR A 89 LYS A 94 1 6 HELIX 7 AA7 PHE A 97 ASN A 104 1 8 HELIX 8 AA8 LYS A 126 TYR A 132 1 7 HELIX 9 AA9 THR A 140 ALA A 158 1 19 HELIX 10 AB1 TYR A 173 HIS A 187 1 15 HELIX 11 AB2 ASN A 203 VAL A 217 1 15 HELIX 12 AB3 PRO A 222 TYR A 228 5 7 HELIX 13 AB4 ALA A 229 GLN A 239 1 11 HELIX 14 AB5 TYR A 250 ALA A 257 1 8 HELIX 15 AB6 TYR A 297 ALA A 309 1 13 HELIX 16 AB7 SER A 310 SER A 322 1 13 HELIX 17 AB8 ARG A 327 THR A 332 5 6 HELIX 18 AB9 ASP A 333 ASN A 340 1 8 HELIX 19 AC1 PRO A 341 LEU A 346 1 6 HELIX 20 AC2 LEU A 346 ASN A 352 1 7 HELIX 21 AC3 PRO A 357 GLY A 362 1 6 HELIX 22 AC4 ARG A 364 THR A 381 1 18 HELIX 23 AC5 LYS A 385 ARG A 402 1 18 SHEET 1 AA1 6 ARG A 36 ILE A 40 0 SHEET 2 AA1 6 VAL A 5 ALA A 9 1 N VAL A 8 O ILE A 40 SHEET 3 AA1 6 VAL A 66 ASP A 70 1 O VAL A 66 N ALA A 9 SHEET 4 AA1 6 LEU A 284 VAL A 291 -1 O MET A 290 N TYR A 67 SHEET 5 AA1 6 LEU A 113 ALA A 119 -1 N LEU A 113 O LEU A 289 SHEET 6 AA1 6 LEU A 324 PRO A 325 -1 O LEU A 324 N THR A 117 SHEET 1 AA2 2 THR A 105 ILE A 106 0 SHEET 2 AA2 2 LYS A 109 LEU A 110 -1 O LYS A 109 N ILE A 106 SHEET 1 AA3 4 TRP A 164 VAL A 167 0 SHEET 2 AA3 4 SER A 242 ASN A 247 1 O ARG A 246 N VAL A 167 SHEET 3 AA3 4 ILE A 121 ARG A 125 -1 N TYR A 123 O MET A 245 SHEET 4 AA3 4 PHE A 266 THR A 269 -1 O THR A 269 N LEU A 122 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.42 CRYST1 85.130 85.130 145.540 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006871 0.00000