HEADER TRANSFERASE 25-JAN-19 6JBD TITLE PHOSPHOTRANSFERASE-ATP COMPLEX RELATED TO COA BIOSYNTHESIS PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POK; COMPND 5 EC: 2.7.1.169; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS (STRAIN ATCC BAA-918 SOURCE 3 / JCM 12380 / KOD1); SOURCE 4 ORGANISM_COMMON: PYROCOCCUS KODAKARAENSIS (STRAIN KOD1); SOURCE 5 ORGANISM_TAXID: 69014; SOURCE 6 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 7 GENE: TK2141; SOURCE 8 EXPRESSION_SYSTEM: THERMOCOCCUS KODAKARENSIS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 311400 KEYWDS COA BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KITA,A.KISHIMOTO,T.SHIMOSAKA,H.TOMITA,Y.YOKOOJI,T.IMANAKA,H.ATOMI, AUTHOR 2 K.MIKI REVDAT 3 27-MAR-24 6JBD 1 REMARK REVDAT 2 19-AUG-20 6JBD 1 JRNL LINK REVDAT 1 29-JAN-20 6JBD 0 JRNL AUTH A.KITA,A.KISHIMOTO,T.SHIMOSAKA,H.TOMITA,Y.YOKOOJI,T.IMANAKA, JRNL AUTH 2 H.ATOMI,K.MIKI JRNL TITL CRYSTAL STRUCTURE OF PANTOATE KINASE FROM THERMOCOCCUS JRNL TITL 2 KODAKARENSIS. JRNL REF PROTEINS V. 88 718 2020 JRNL REFN ESSN 1097-0134 JRNL PMID 31697438 JRNL DOI 10.1002/PROT.25852 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 235.00 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 11027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.333 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.237 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.980 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 49.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBO2.PARAM REMARK 3 PARAMETER FILE 6 : CNS_TOPPAR:ATP9.PARAM REMARK 3 PARAMETER FILE 7 : CNS_TOPPAR:P10.PAR REMARK 3 PARAMETER FILE 8 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 TOPOLOGY FILE 8 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CALCIUM ACETATE, ATP, REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -142.98450 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 82.55214 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.69100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 555 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 186 REMARK 465 ARG A 187 REMARK 465 GLU A 188 REMARK 465 VAL A 189 REMARK 465 LEU A 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 191 CG OD1 OD2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ASN A 280 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 -172.57 66.02 REMARK 500 LEU A 256 52.96 74.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ATP A 406 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 21 O REMARK 620 2 GLU A 21 OE2 85.2 REMARK 620 3 GLU A 21 O 0.0 85.2 REMARK 620 4 GLU A 21 OE2 85.2 0.0 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OE1 REMARK 620 2 GLU A 61 OE2 48.0 REMARK 620 3 ASP A 94 OD1 36.1 83.1 REMARK 620 4 HOH A 512 O 30.0 77.4 6.2 REMARK 620 5 HOH A 516 O 30.4 75.9 8.7 7.0 REMARK 620 6 HOH A 518 O 30.3 77.2 6.0 2.2 4.8 REMARK 620 7 HOH A 537 O 33.4 81.4 9.0 7.7 14.5 9.7 REMARK 620 8 HOH A 560 O 27.3 75.1 10.0 4.5 10.7 6.4 6.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 101 O REMARK 620 2 ASN A 103 OD1 106.4 REMARK 620 3 HOH A 515 O 123.0 115.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 412 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 169 O REMARK 620 2 PGE A 405 O2 78.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 266 OD1 REMARK 620 2 ASP A 266 OD2 46.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 406 O3G REMARK 620 2 ATP A 406 O2B 82.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 412 DBREF 6JBD A 1 300 UNP Q5JHF1 POK_THEKO 1 300 SEQRES 1 A 300 MET LEU ILE ARG ALA PHE ILE PRO ALA HIS ILE THR ALA SEQRES 2 A 300 PHE PHE VAL PRO VAL PHE HIS GLU GLU PRO LEU LYS ALA SEQRES 3 A 300 GLY SER LEU GLY ALA GLY VAL ASN LEU SER LYS GLY THR SEQRES 4 A 300 ASN VAL PHE ALA SER ILE GLU THR GLY THR LEU GLU ARG SEQRES 5 A 300 HIS ILE HIS VAL ALA PHE ASN GLY GLU PRO VAL LYS ARG SEQRES 6 A 300 GLU GLU ALA GLU ILE THR TYR TYR VAL ALA GLU LYS LEU SEQRES 7 A 300 VAL PRO LYS ASP PHE LEU GLY GLU VAL GLU VAL TRP GLN SEQRES 8 A 300 TYR PHE ASP PHE PRO ASN GLY TYR GLY PHE GLY ASN SER SEQRES 9 A 300 ALA GLY GLY ALA LEU GLY THR ALA LEU ALA LEU SER TYR SEQRES 10 A 300 ALA PHE GLY GLY THR TRP LEU ARG ALA ALA GLN LEU ALA SEQRES 11 A 300 HIS GLU ALA GLU VAL LYS HIS LYS GLY GLY LEU GLY ASP SEQRES 12 A 300 VAL ILE GLY GLN LEU ALA GLY GLY ILE GLU VAL ARG ILE SEQRES 13 A 300 LYS PRO GLY GLY PRO GLY ILE GLY VAL THR ASP ASN LEU SEQRES 14 A 300 PHE PHE GLU ASP TYR LYS VAL LEU VAL VAL PRO LEU GLY SEQRES 15 A 300 ARG LEU SER THR ARG GLU VAL LEU ASP GLY ASP VAL VAL SEQRES 16 A 300 LYS ALA ILE GLU VAL GLU GLY ARG LYS ALA LEU GLU GLU SEQRES 17 A 300 LEU LEU LYS GLU PRO LYS PRO GLU ARG MET MET VAL LEU SEQRES 18 A 300 ALA ARG ASN PHE ALA GLU LYS THR GLY LEU LEU PRO GLY SEQRES 19 A 300 GLU LEU SER GLU ILE ALA ARG GLU LEU ASP LYS VAL LEU SEQRES 20 A 300 LYS ASN PRO SER SER MET ILE MET LEU GLY LYS GLY LEU SEQRES 21 A 300 PHE ALA LEU VAL ARG ASP GLU GLU ALA GLU LYS ALA LYS SEQRES 22 A 300 GLN LEU LEU SER ASP MET ASN LEU PRO TYR ASP ILE ALA SEQRES 23 A 300 GLU ILE TYR THR GLU ARG PRO LYS VAL GLY ARG TRP VAL SEQRES 24 A 300 GLY HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET EDO A 404 4 HET PGE A 405 10 HET ATP A 406 22 HET MG A 407 1 HET CA A 408 1 HET CA A 409 1 HET CA A 410 1 HET NA A 411 1 HET NA A 412 1 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 EDO C2 H6 O2 FORMUL 6 PGE C6 H14 O4 FORMUL 7 ATP C10 H16 N5 O13 P3 FORMUL 8 MG MG 2+ FORMUL 9 CA 3(CA 2+) FORMUL 12 NA 2(NA 1+) FORMUL 14 HOH *61(H2 O) HELIX 1 AA1 GLU A 22 ALA A 26 5 5 HELIX 2 AA2 ALA A 68 VAL A 79 1 12 HELIX 3 AA3 GLY A 102 GLY A 120 1 19 HELIX 4 AA4 THR A 122 HIS A 137 1 16 HELIX 5 AA5 GLY A 142 GLY A 150 1 9 HELIX 6 AA6 GLY A 192 GLU A 212 1 21 HELIX 7 AA7 LYS A 214 THR A 229 1 16 HELIX 8 AA8 PRO A 233 ASP A 244 1 12 HELIX 9 AA9 ARG A 265 ASP A 278 1 14 SHEET 1 AA1 6 GLU A 61 PRO A 62 0 SHEET 2 AA1 6 ARG A 52 PHE A 58 -1 N PHE A 58 O GLU A 61 SHEET 3 AA1 6 GLY A 85 TYR A 92 1 O VAL A 87 N HIS A 53 SHEET 4 AA1 6 GLY A 27 THR A 47 -1 N SER A 44 O GLU A 88 SHEET 5 AA1 6 ILE A 152 LYS A 157 -1 O ARG A 155 N GLY A 30 SHEET 6 AA1 6 VAL A 165 ASN A 168 -1 O ASP A 167 N VAL A 154 SHEET 1 AA2 6 GLU A 61 PRO A 62 0 SHEET 2 AA2 6 ARG A 52 PHE A 58 -1 N PHE A 58 O GLU A 61 SHEET 3 AA2 6 GLY A 85 TYR A 92 1 O VAL A 87 N HIS A 53 SHEET 4 AA2 6 GLY A 27 THR A 47 -1 N SER A 44 O GLU A 88 SHEET 5 AA2 6 LEU A 2 VAL A 18 -1 N ILE A 3 O ALA A 43 SHEET 6 AA2 6 LYS A 294 ARG A 297 -1 O GLY A 296 N ARG A 4 SHEET 1 AA3 4 SER A 252 MET A 253 0 SHEET 2 AA3 4 LYS A 258 VAL A 264 -1 O PHE A 261 N SER A 252 SHEET 3 AA3 4 LYS A 175 GLY A 182 -1 N VAL A 179 O LEU A 260 SHEET 4 AA3 4 ASP A 284 GLU A 287 -1 O ALA A 286 N VAL A 176 LINK O GLU A 21 CA CA A 408 1555 1555 2.66 LINK OE2 GLU A 21 CA CA A 408 1555 1555 2.40 LINK O GLU A 21 CA CA A 408 1555 4466 2.61 LINK OE2 GLU A 21 CA CA A 408 1555 4466 2.42 LINK OE1 GLU A 61 CA CA A 410 1555 2565 2.76 LINK OE2 GLU A 61 CA CA A 410 1555 2565 2.68 LINK OD1 ASP A 94 CA CA A 410 1555 1555 2.44 LINK O PHE A 101 NA NA A 411 1555 1555 2.81 LINK OD1 ASN A 103 NA NA A 411 1555 1555 2.77 LINK O LEU A 169 NA NA A 412 1555 1555 2.83 LINK OD1 ASP A 266 CA CA A 409 1555 1555 2.74 LINK OD2 ASP A 266 CA CA A 409 1555 1555 2.84 LINK O2 PGE A 405 NA NA A 412 1555 1555 2.61 LINK O3G ATP A 406 MG MG A 407 1555 1555 2.59 LINK O2B ATP A 406 MG MG A 407 1555 1555 2.59 LINK CA CA A 410 O HOH A 512 1555 1555 2.46 LINK CA CA A 410 O HOH A 516 1555 1555 2.36 LINK CA CA A 410 O HOH A 518 1555 1555 2.86 LINK CA CA A 410 O HOH A 537 1555 1555 2.56 LINK CA CA A 410 O HOH A 560 1555 3455 2.92 LINK NA NA A 411 O HOH A 515 1555 1555 2.63 SITE 1 AC1 7 ARG A 4 PHE A 6 SER A 36 LYS A 64 SITE 2 AC1 7 TYR A 289 LYS A 294 HOH A 540 SITE 1 AC2 7 THR A 12 PHE A 15 GLY A 140 LEU A 141 SITE 2 AC2 7 GLY A 142 ASP A 143 ARG A 155 SITE 1 AC3 3 TYR A 117 PHE A 170 PHE A 171 SITE 1 AC4 3 GLU A 291 ARG A 292 LYS A 294 SITE 1 AC5 10 TRP A 123 ALA A 149 ASN A 168 LEU A 169 SITE 2 AC5 10 PHE A 170 PHE A 171 THR A 290 ARG A 292 SITE 3 AC5 10 NA A 412 HOH A 511 SITE 1 AC6 18 GLY A 98 TYR A 99 GLY A 100 GLY A 102 SITE 2 AC6 18 ASN A 103 SER A 104 ALA A 105 GLU A 134 SITE 3 AC6 18 GLY A 139 ASP A 143 ARG A 183 LEU A 184 SITE 4 AC6 18 SER A 185 LEU A 256 MG A 407 HOH A 502 SITE 5 AC6 18 HOH A 503 HOH A 519 SITE 1 AC7 1 ATP A 406 SITE 1 AC8 1 GLU A 21 SITE 1 AC9 1 ASP A 266 SITE 1 AD1 7 GLU A 61 ASP A 94 HOH A 512 HOH A 516 SITE 2 AD1 7 HOH A 518 HOH A 537 HOH A 560 SITE 1 AD2 5 ALA A 9 PHE A 101 GLY A 102 ASN A 103 SITE 2 AD2 5 HOH A 515 SITE 1 AD3 5 GLY A 151 ILE A 152 ASN A 168 LEU A 169 SITE 2 AD3 5 PGE A 405 CRYST1 95.323 95.323 60.691 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010491 0.006057 0.000000 0.00000 SCALE2 0.000000 0.012114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016477 0.00000