data_6JBG # _entry.id 6JBG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JBG pdb_00006jbg 10.2210/pdb6jbg/pdb WWPDB D_1300010798 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2020-01-29 _pdbx_database_PDB_obs_spr.pdb_id 6JBG _pdbx_database_PDB_obs_spr.replace_pdb_id 5BXK _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JBG _pdbx_database_status.recvd_initial_deposition_date 2019-01-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kanazawa, H.' 1 ? 'Auffinger, P.' 2 ? 'Hanessian, S.' 3 ? 'Kondo, J.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Hanessian, S.' 2 ? primary 'Kanazawa, H.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 95.100 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6JBG _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.382 _cell.length_a_esd ? _cell.length_b 83.720 _cell.length_b_esd ? _cell.length_c 51.444 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7064.258 2 ? ? ? ? 2 polymer syn ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7370.424 2 ? ? ? ? 3 non-polymer syn '(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucopyranoside' 324.349 1 ? ? ? ? 4 water nat water 18.015 26 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UGCGUCACGCCGGCGAAGUCGC UGCGUCACGCCGGCGAAGUCGC A,B ? 2 polyribonucleotide no no UUGCGUCACGCCGGCGAAGUCGC UUGCGUCACGCCGGCGAAGUCGC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 C n 1 9 G n 1 10 C n 1 11 C n 1 12 G n 1 13 G n 1 14 C n 1 15 G n 1 16 A n 1 17 A n 1 18 G n 1 19 U n 1 20 C n 1 21 G n 1 22 C n 2 1 U n 2 2 U n 2 3 G n 2 4 C n 2 5 G n 2 6 U n 2 7 C n 2 8 A n 2 9 C n 2 10 G n 2 11 C n 2 12 C n 2 13 G n 2 14 G n 2 15 C n 2 16 G n 2 17 A n 2 18 A n 2 19 G n 2 20 U n 2 21 C n 2 22 G n 2 23 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 22 'synthetic construct' ? 32630 ? 2 1 sample 1 23 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6JBG 6JBG ? 1 ? 1 2 PDB 6JBG 6JBG ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JBG A 1 ? 22 ? 6JBG 2 ? 23 ? 2 23 2 1 6JBG B 1 ? 22 ? 6JBG 25 ? 46 ? 25 46 3 2 6JBG C 1 ? 23 ? 6JBG 47 ? 69 ? 47 69 4 2 6JBG D 1 ? 23 ? 6JBG 70 ? 92 ? 70 92 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 S81 D-saccharide . '(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucopyranoside' ;(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-D-glucoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-glucoside ; 'C12 H25 F N4 O5' 324.349 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JBG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 3350, KCl, Sodium cacodylate, Spermine tetrahydrochloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-12-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 49.670 _reflns.entry_id 6JBG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 43.704 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4396 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.690 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.190 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.001 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.139 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 3.100 3.180 ? 3.560 ? ? ? ? 333 97.700 ? ? ? ? 0.363 ? ? ? ? ? ? ? ? 6.790 ? ? ? ? 0.393 ? ? 1 1 0.988 ? ? 3.180 3.270 ? 4.670 ? ? ? ? 302 100.000 ? ? ? ? 0.280 ? ? ? ? ? ? ? ? 6.775 ? ? ? ? 0.303 ? ? 2 1 0.993 ? ? 3.270 3.360 ? 4.850 ? ? ? ? 296 100.000 ? ? ? ? 0.309 ? ? ? ? ? ? ? ? 6.554 ? ? ? ? 0.336 ? ? 3 1 0.992 ? ? 3.360 3.460 ? 5.280 ? ? ? ? 301 100.000 ? ? ? ? 0.292 ? ? ? ? ? ? ? ? 6.907 ? ? ? ? 0.316 ? ? 4 1 0.992 ? ? 3.460 3.580 ? 5.480 ? ? ? ? 304 99.700 ? ? ? ? 0.269 ? ? ? ? ? ? ? ? 6.753 ? ? ? ? 0.291 ? ? 5 1 0.993 ? ? 3.580 3.700 ? 6.950 ? ? ? ? 262 100.000 ? ? ? ? 0.206 ? ? ? ? ? ? ? ? 6.733 ? ? ? ? 0.223 ? ? 6 1 0.994 ? ? 3.700 3.840 ? 7.190 ? ? ? ? 279 100.000 ? ? ? ? 0.208 ? ? ? ? ? ? ? ? 6.423 ? ? ? ? 0.226 ? ? 7 1 0.993 ? ? 3.840 4.000 ? 8.850 ? ? ? ? 269 100.000 ? ? ? ? 0.162 ? ? ? ? ? ? ? ? 6.796 ? ? ? ? 0.175 ? ? 8 1 0.997 ? ? 4.000 4.180 ? 11.370 ? ? ? ? 238 99.600 ? ? ? ? 0.155 ? ? ? ? ? ? ? ? 6.794 ? ? ? ? 0.168 ? ? 9 1 0.994 ? ? 4.180 4.380 ? 11.870 ? ? ? ? 241 100.000 ? ? ? ? 0.160 ? ? ? ? ? ? ? ? 6.610 ? ? ? ? 0.173 ? ? 10 1 0.994 ? ? 4.380 4.620 ? 12.930 ? ? ? ? 228 99.600 ? ? ? ? 0.146 ? ? ? ? ? ? ? ? 7.110 ? ? ? ? 0.158 ? ? 11 1 0.991 ? ? 4.620 4.900 ? 14.220 ? ? ? ? 212 100.000 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? 6.759 ? ? ? ? 0.133 ? ? 12 1 0.992 ? ? 4.900 5.240 ? 15.470 ? ? ? ? 199 100.000 ? ? ? ? 0.117 ? ? ? ? ? ? ? ? 6.417 ? ? ? ? 0.128 ? ? 13 1 0.993 ? ? 5.240 5.660 ? 19.570 ? ? ? ? 204 100.000 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 6.877 ? ? ? ? 0.096 ? ? 14 1 0.997 ? ? 5.660 6.200 ? 16.830 ? ? ? ? 160 98.800 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 6.338 ? ? ? ? 0.112 ? ? 15 1 0.994 ? ? 6.200 6.930 ? 22.410 ? ? ? ? 166 100.000 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 6.898 ? ? ? ? 0.080 ? ? 16 1 0.997 ? ? 6.930 8.000 ? 24.880 ? ? ? ? 138 100.000 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 6.312 ? ? ? ? 0.069 ? ? 17 1 0.996 ? ? 8.000 9.800 ? 24.020 ? ? ? ? 121 100.000 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 6.430 ? ? ? ? 0.067 ? ? 18 1 0.999 ? ? 9.800 13.860 ? 30.790 ? ? ? ? 91 98.900 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 6.495 ? ? ? ? 0.049 ? ? 19 1 0.997 ? ? 13.860 43.704 ? 29.930 ? ? ? ? 52 98.100 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 5.846 ? ? ? ? 0.045 ? ? 20 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 111.600 _refine.B_iso_mean 54.9900 _refine.B_iso_min 20.500 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JBG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.1 _refine.ls_d_res_low 43.7040 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4329 _refine.ls_number_reflns_R_free 418 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.3200 _refine.ls_percent_reflns_R_free 9.6600 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1667 _refine.ls_R_factor_R_free 0.2253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1609 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1J7T _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.8100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.1 _refine_hist.d_res_low 43.7040 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 1962 _refine_hist.pdbx_number_residues_total 90 _refine_hist.pdbx_B_iso_mean_ligand 39.75 _refine_hist.pdbx_B_iso_mean_solvent 44.19 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1914 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2160 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.953 ? 3354 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.042 ? 458 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 94 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.279 ? 1066 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0990 3.5473 1413 . 130 1283 97.0000 . . . 0.2887 0.0000 0.2000 . . . . . . 3 . . . 'X-RAY DIFFRACTION' 3.5473 4.4685 1429 . 151 1278 99.0000 . . . 0.2381 0.0000 0.1601 . . . . . . 3 . . . 'X-RAY DIFFRACTION' 4.4685 43.7088 1487 . 137 1350 100.0000 . . . 0.1946 0.0000 0.1473 . . . . . . 3 . . . # _struct.entry_id 6JBG _struct.title ;Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JBG _struct_keywords.text 'RNA, antibiotic, RNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords RNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 21 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 21 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 21 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 B U 19 O4 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 17 N6 ? ? ? 1_555 B A 7 N1 ? ? A A 18 B A 31 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 19 N3 ? ? ? 1_555 B U 5 O2 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? A U 19 O4 ? ? ? 1_555 B U 5 N3 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog44 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 21 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 21 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 21 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 23 N3 ? ? C G 49 D C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 23 O2 ? ? C G 49 D C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 23 N4 ? ? C G 49 D C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 22 N1 ? ? C C 50 D G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 22 O6 ? ? C C 50 D G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 22 N2 ? ? C C 50 D G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 51 D C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 51 D C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 51 D C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C U 6 N3 ? ? ? 1_555 D U 20 O4 ? ? C U 52 D U 89 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog63 hydrog ? ? C U 6 O2 ? ? ? 1_555 D U 20 N3 ? ? C U 52 D U 89 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog64 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 19 N1 ? ? C C 53 D G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 19 O6 ? ? C C 53 D G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 19 N2 ? ? C C 53 D G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C A 8 N1 ? ? ? 1_555 D A 18 N6 ? ? C A 54 D A 87 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog68 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 16 N1 ? ? C C 55 D G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 16 O6 ? ? C C 55 D G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 16 N2 ? ? C C 55 D G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 56 D C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 56 D C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 56 D C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 14 N1 ? ? C C 57 D G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 14 O6 ? ? C C 57 D G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 14 N2 ? ? C C 57 D G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 13 N1 ? ? C C 58 D G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 13 O6 ? ? C C 58 D G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 13 N2 ? ? C C 58 D G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 59 D C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 59 D C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 59 D C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C G 14 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 60 D C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C G 14 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 60 D C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C G 14 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 60 D C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 61 D G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 61 D G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 61 D G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 62 D C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 62 D C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 62 D C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C A 18 N6 ? ? ? 1_555 D A 8 N1 ? ? C A 64 D A 77 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog93 hydrog ? ? C G 19 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 65 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C G 19 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 65 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C G 19 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 65 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C U 20 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 66 D U 75 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog97 hydrog ? ? C U 20 O2 ? ? ? 1_555 D U 6 N3 ? ? C U 66 D U 75 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog98 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 67 D G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 67 D G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 67 D G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? C G 22 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 68 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? C G 22 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 68 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? C G 22 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 68 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? C C 23 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 69 D G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? C C 23 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 69 D G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? C C 23 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 69 D G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6JBG _atom_sites.fract_transf_matrix[1][1] 0.035234 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003142 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019516 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 2 2 U U A . n A 1 2 G 2 3 3 G G A . n A 1 3 C 3 4 4 C C A . n A 1 4 G 4 5 5 G G A . n A 1 5 U 5 6 6 U U A . n A 1 6 C 6 7 7 C C A . n A 1 7 A 7 8 8 A A A . n A 1 8 C 8 9 9 C C A . n A 1 9 G 9 10 10 G G A . n A 1 10 C 10 11 11 C C A . n A 1 11 C 11 12 12 C C A . n A 1 12 G 12 13 13 G G A . n A 1 13 G 13 14 14 G G A . n A 1 14 C 14 15 15 C C A . n A 1 15 G 15 16 16 G G A . n A 1 16 A 16 17 17 A A A . n A 1 17 A 17 18 18 A A A . n A 1 18 G 18 19 19 G G A . n A 1 19 U 19 20 20 U U A . n A 1 20 C 20 21 21 C C A . n A 1 21 G 21 22 22 G G A . n A 1 22 C 22 23 23 C C A . n B 1 1 U 1 25 25 U U B . n B 1 2 G 2 26 26 G G B . n B 1 3 C 3 27 27 C C B . n B 1 4 G 4 28 28 G G B . n B 1 5 U 5 29 29 U U B . n B 1 6 C 6 30 30 C C B . n B 1 7 A 7 31 31 A A B . n B 1 8 C 8 32 32 C C B . n B 1 9 G 9 33 33 G G B . n B 1 10 C 10 34 34 C C B . n B 1 11 C 11 35 35 C C B . n B 1 12 G 12 36 36 G G B . n B 1 13 G 13 37 37 G G B . n B 1 14 C 14 38 38 C C B . n B 1 15 G 15 39 39 G G B . n B 1 16 A 16 40 40 A A B . n B 1 17 A 17 41 41 A A B . n B 1 18 G 18 42 42 G G B . n B 1 19 U 19 43 43 U U B . n B 1 20 C 20 44 44 C C B . n B 1 21 G 21 45 45 G G B . n B 1 22 C 22 46 46 C C B . n C 2 1 U 1 47 47 U U C . n C 2 2 U 2 48 48 U U C . n C 2 3 G 3 49 49 G G C . n C 2 4 C 4 50 50 C C C . n C 2 5 G 5 51 51 G G C . n C 2 6 U 6 52 52 U U C . n C 2 7 C 7 53 53 C C C . n C 2 8 A 8 54 54 A A C . n C 2 9 C 9 55 55 C C C . n C 2 10 G 10 56 56 G G C . n C 2 11 C 11 57 57 C C C . n C 2 12 C 12 58 58 C C C . n C 2 13 G 13 59 59 G G C . n C 2 14 G 14 60 60 G G C . n C 2 15 C 15 61 61 C C C . n C 2 16 G 16 62 62 G G C . n C 2 17 A 17 63 63 A A C . n C 2 18 A 18 64 64 A A C . n C 2 19 G 19 65 65 G G C . n C 2 20 U 20 66 66 U U C . n C 2 21 C 21 67 67 C C C . n C 2 22 G 22 68 68 G G C . n C 2 23 C 23 69 69 C C C . n D 2 1 U 1 70 70 U U D . n D 2 2 U 2 71 71 U U D . n D 2 3 G 3 72 72 G G D . n D 2 4 C 4 73 73 C C D . n D 2 5 G 5 74 74 G G D . n D 2 6 U 6 75 75 U U D . n D 2 7 C 7 76 76 C C D . n D 2 8 A 8 77 77 A A D . n D 2 9 C 9 78 78 C C D . n D 2 10 G 10 79 79 G G D . n D 2 11 C 11 80 80 C C D . n D 2 12 C 12 81 81 C C D . n D 2 13 G 13 82 82 G G D . n D 2 14 G 14 83 83 G G D . n D 2 15 C 15 84 84 C C D . n D 2 16 G 16 85 85 G G D . n D 2 17 A 17 86 86 A A D . n D 2 18 A 18 87 87 A A D . n D 2 19 G 19 88 88 G G D . n D 2 20 U 20 89 89 U U D . n D 2 21 C 21 90 90 C C D . n D 2 22 G 22 91 91 G G D . n D 2 23 C 23 92 92 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 S81 1 301 301 S81 S81 B . F 4 HOH 1 101 122 HOH HOH A . F 4 HOH 2 102 101 HOH HOH A . F 4 HOH 3 103 108 HOH HOH A . F 4 HOH 4 104 103 HOH HOH A . F 4 HOH 5 105 114 HOH HOH A . F 4 HOH 6 106 109 HOH HOH A . F 4 HOH 7 107 125 HOH HOH A . F 4 HOH 8 108 126 HOH HOH A . G 4 HOH 1 401 110 HOH HOH B . G 4 HOH 2 402 104 HOH HOH B . G 4 HOH 3 403 111 HOH HOH B . G 4 HOH 4 404 119 HOH HOH B . G 4 HOH 5 405 113 HOH HOH B . G 4 HOH 6 406 118 HOH HOH B . G 4 HOH 7 407 120 HOH HOH B . G 4 HOH 8 408 121 HOH HOH B . H 4 HOH 1 101 116 HOH HOH C . H 4 HOH 2 102 124 HOH HOH C . H 4 HOH 3 103 115 HOH HOH C . H 4 HOH 4 104 106 HOH HOH C . H 4 HOH 5 105 112 HOH HOH C . I 4 HOH 1 101 105 HOH HOH D . I 4 HOH 2 102 123 HOH HOH D . I 4 HOH 3 103 117 HOH HOH D . I 4 HOH 4 104 102 HOH HOH D . I 4 HOH 5 105 107 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G 2 1 C,D,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2020 ? 1 MORE -11 ? 1 'SSA (A^2)' 8280 ? 2 'ABSA (A^2)' 2020 ? 2 MORE -15 ? 2 'SSA (A^2)' 8410 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-29 2 'Structure model' 1 1 2020-03-25 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-22 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' reflns_shell 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' struct_site 5 3 'Structure model' struct_site_gen 6 4 'Structure model' chem_comp 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 10 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_reflns_shell.percent_possible_all' 2 3 'Structure model' '_atom_site.auth_atom_id' 3 3 'Structure model' '_atom_site.label_atom_id' 4 3 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_chem_comp.pdbx_synonyms' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.3_1479 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 S81 C1 C N S 114 S81 C10 C N R 115 S81 C11 C N R 116 S81 C12 C N S 117 S81 C2 C N R 118 S81 C3 C N R 119 S81 C4 C N S 120 S81 C5 C N R 121 S81 C6 C N N 122 S81 C7 C N R 123 S81 C8 C N N 124 S81 C9 C N S 125 S81 F99 F N N 126 S81 N2 N N N 127 S81 N6 N N N 128 S81 N7 N N N 129 S81 N9 N N N 130 S81 O1 O N N 131 S81 O11 O N N 132 S81 O12 O N N 133 S81 O3 O N N 134 S81 O5 O N N 135 S81 H1 H N N 136 S81 H2A H N N 137 S81 H3A H N N 138 S81 H4A H N N 139 S81 H2 H N N 140 S81 H3 H N N 141 S81 H4 H N N 142 S81 H5 H N N 143 S81 H61 H N N 144 S81 H62 H N N 145 S81 H11 H N N 146 S81 H12 H N N 147 S81 H13 H N N 148 S81 H14 H N N 149 S81 H15 H N N 150 S81 H16 H N N 151 S81 H18 H N N 152 S81 H19 H N N 153 S81 H21 H N N 154 S81 H22 H N N 155 S81 H24 H N N 156 S81 H25 H N N 157 S81 H27 H N N 158 S81 H28 H N N 159 S81 HO3 H N N 160 U OP3 O N N 161 U P P N N 162 U OP1 O N N 163 U OP2 O N N 164 U "O5'" O N N 165 U "C5'" C N N 166 U "C4'" C N R 167 U "O4'" O N N 168 U "C3'" C N S 169 U "O3'" O N N 170 U "C2'" C N R 171 U "O2'" O N N 172 U "C1'" C N R 173 U N1 N N N 174 U C2 C N N 175 U O2 O N N 176 U N3 N N N 177 U C4 C N N 178 U O4 O N N 179 U C5 C N N 180 U C6 C N N 181 U HOP3 H N N 182 U HOP2 H N N 183 U "H5'" H N N 184 U "H5''" H N N 185 U "H4'" H N N 186 U "H3'" H N N 187 U "HO3'" H N N 188 U "H2'" H N N 189 U "HO2'" H N N 190 U "H1'" H N N 191 U H3 H N N 192 U H5 H N N 193 U H6 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 S81 N6 C6 sing N N 118 S81 C6 C5 sing N N 119 S81 O5 C5 sing N N 120 S81 O5 C1 sing N N 121 S81 C5 C4 sing N N 122 S81 C4 F99 sing N N 123 S81 C4 C3 sing N N 124 S81 C1 C2 sing N N 125 S81 C1 O1 sing N N 126 S81 C2 C3 sing N N 127 S81 C2 N2 sing N N 128 S81 O11 C11 sing N N 129 S81 C3 O3 sing N N 130 S81 O1 C10 sing N N 131 S81 C10 C11 sing N N 132 S81 C10 C9 sing N N 133 S81 C11 C12 sing N N 134 S81 C12 O12 sing N N 135 S81 C12 C7 sing N N 136 S81 N9 C9 sing N N 137 S81 C9 C8 sing N N 138 S81 C8 C7 sing N N 139 S81 C7 N7 sing N N 140 S81 C1 H1 sing N N 141 S81 C10 H2A sing N N 142 S81 C11 H3A sing N N 143 S81 C12 H4A sing N N 144 S81 C2 H2 sing N N 145 S81 C3 H3 sing N N 146 S81 C4 H4 sing N N 147 S81 C5 H5 sing N N 148 S81 C6 H61 sing N N 149 S81 C6 H62 sing N N 150 S81 C7 H11 sing N N 151 S81 C8 H12 sing N N 152 S81 C8 H13 sing N N 153 S81 C9 H14 sing N N 154 S81 N2 H15 sing N N 155 S81 N2 H16 sing N N 156 S81 N6 H18 sing N N 157 S81 N6 H19 sing N N 158 S81 N7 H21 sing N N 159 S81 N7 H22 sing N N 160 S81 N9 H24 sing N N 161 S81 N9 H25 sing N N 162 S81 O11 H27 sing N N 163 S81 O12 H28 sing N N 164 S81 O3 HO3 sing N N 165 U OP3 P sing N N 166 U OP3 HOP3 sing N N 167 U P OP1 doub N N 168 U P OP2 sing N N 169 U P "O5'" sing N N 170 U OP2 HOP2 sing N N 171 U "O5'" "C5'" sing N N 172 U "C5'" "C4'" sing N N 173 U "C5'" "H5'" sing N N 174 U "C5'" "H5''" sing N N 175 U "C4'" "O4'" sing N N 176 U "C4'" "C3'" sing N N 177 U "C4'" "H4'" sing N N 178 U "O4'" "C1'" sing N N 179 U "C3'" "O3'" sing N N 180 U "C3'" "C2'" sing N N 181 U "C3'" "H3'" sing N N 182 U "O3'" "HO3'" sing N N 183 U "C2'" "O2'" sing N N 184 U "C2'" "C1'" sing N N 185 U "C2'" "H2'" sing N N 186 U "O2'" "HO2'" sing N N 187 U "C1'" N1 sing N N 188 U "C1'" "H1'" sing N N 189 U N1 C2 sing N N 190 U N1 C6 sing N N 191 U C2 O2 doub N N 192 U C2 N3 sing N N 193 U N3 C4 sing N N 194 U N3 H3 sing N N 195 U C4 O4 doub N N 196 U C4 C5 sing N N 197 U C5 C6 doub N N 198 U C5 H5 sing N N 199 U C6 H6 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JBG 'double helix' 6JBG 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 22 1_555 0.170 0.242 0.411 7.542 -5.300 6.287 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 3 1_555 B G 21 1_555 -0.482 -0.079 -0.046 6.222 -10.447 4.223 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 4 1_555 B C 20 1_555 0.104 -0.032 -0.313 -3.527 -4.575 5.298 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 5 1_555 B U 19 1_555 1.199 -1.103 0.070 1.109 -7.876 2.774 4 A_U6:U43_B A 6 ? B 43 ? ? ? 1 A C 6 1_555 B G 18 1_555 0.302 -0.050 -0.480 3.388 1.874 -1.242 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A C 8 1_555 B G 15 1_555 0.221 -0.129 -0.144 5.436 -13.772 6.496 6 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 9 1_555 B C 14 1_555 0.083 0.180 -0.723 -8.287 -11.312 7.788 7 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A C 10 1_555 B G 13 1_555 0.204 -0.383 -0.410 7.214 -5.450 -6.633 8 A_C11:G37_B A 11 ? B 37 ? 19 1 1 A C 11 1_555 B G 12 1_555 -0.437 0.064 0.000 6.050 -15.751 -2.822 9 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 12 1_555 B C 11 1_555 0.854 -0.002 -0.013 -4.890 -5.416 -1.679 10 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A G 13 1_555 B C 10 1_555 0.172 -0.123 -0.335 -6.042 -4.249 -3.791 11 A_G14:C34_B A 14 ? B 34 ? 19 1 1 A C 14 1_555 B G 9 1_555 0.386 -0.030 0.307 -2.119 5.038 3.575 12 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 15 1_555 B C 8 1_555 -0.248 -0.080 -0.679 -6.381 -15.029 2.721 13 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A A 17 1_555 B A 7 1_555 -1.410 1.496 1.041 12.554 4.184 3.338 14 A_A18:A31_B A 18 ? B 31 ? ? 1 1 A G 18 1_555 B C 6 1_555 -0.404 -0.160 1.110 10.268 -10.246 8.934 15 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 19 1_555 B U 5 1_555 -0.435 -1.574 0.872 14.734 -16.130 2.882 16 A_U20:U29_B A 20 ? B 29 ? 16 1 1 A C 20 1_555 B G 4 1_555 -0.438 -0.153 1.173 -3.536 2.409 13.191 17 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 21 1_555 B C 3 1_555 0.452 -0.034 -0.122 5.311 -6.148 5.783 18 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 22 1_555 B G 2 1_555 -0.049 0.216 -0.627 9.958 -0.469 14.760 19 A_C23:G26_B A 23 ? B 26 ? 19 1 1 C G 3 1_555 D C 23 1_555 0.459 0.011 0.185 3.720 -10.714 1.759 20 C_G49:C92_D C 49 ? D 92 ? 19 1 1 C C 4 1_555 D G 22 1_555 0.120 0.016 0.048 8.024 -18.442 7.632 21 C_C50:G91_D C 50 ? D 91 ? 19 1 1 C G 5 1_555 D C 21 1_555 -0.106 -0.076 0.142 1.786 -15.214 8.743 22 C_G51:C90_D C 51 ? D 90 ? 19 1 1 C U 6 1_555 D U 20 1_555 1.285 -1.654 -0.039 -12.413 -20.835 3.667 23 C_U52:U89_D C 52 ? D 89 ? 16 1 1 C C 7 1_555 D G 19 1_555 0.136 -0.284 0.438 -9.190 -14.799 2.429 24 C_C53:G88_D C 53 ? D 88 ? 19 1 1 C A 8 1_555 D A 18 1_555 2.889 2.032 -0.202 -15.150 9.943 -1.942 25 C_A54:A87_D C 54 ? D 87 ? ? ? 1 C C 9 1_555 D G 16 1_555 -0.349 -0.199 -0.485 13.748 -13.198 -2.142 26 C_C55:G85_D C 55 ? D 85 ? 19 1 1 C G 10 1_555 D C 15 1_555 0.553 -0.142 0.376 8.701 -6.214 -0.845 27 C_G56:C84_D C 56 ? D 84 ? 19 1 1 C C 11 1_555 D G 14 1_555 -0.431 -0.154 0.095 4.903 -6.891 1.530 28 C_C57:G83_D C 57 ? D 83 ? 19 1 1 C C 12 1_555 D G 13 1_555 0.322 0.036 0.715 -10.019 -13.604 7.871 29 C_C58:G82_D C 58 ? D 82 ? 19 1 1 C G 13 1_555 D C 12 1_555 0.304 -0.181 1.097 8.035 -9.422 -1.063 30 C_G59:C81_D C 59 ? D 81 ? 19 1 1 C G 14 1_555 D C 11 1_555 0.068 -0.023 0.345 -4.863 -21.184 5.082 31 C_G60:C80_D C 60 ? D 80 ? 19 1 1 C C 15 1_555 D G 10 1_555 0.032 -0.101 0.952 -8.013 -12.317 0.043 32 C_C61:G79_D C 61 ? D 79 ? 19 1 1 C G 16 1_555 D C 9 1_555 -0.017 -0.328 -0.399 -0.139 -9.261 -4.676 33 C_G62:C78_D C 62 ? D 78 ? 19 1 1 C A 18 1_555 D A 8 1_555 -2.517 1.254 0.350 5.402 7.486 -4.085 34 C_A64:A77_D C 64 ? D 77 ? ? 1 1 C G 19 1_555 D C 7 1_555 0.181 0.144 0.021 9.870 -12.318 3.983 35 C_G65:C76_D C 65 ? D 76 ? 19 1 1 C U 20 1_555 D U 6 1_555 2.210 -2.090 0.279 -1.695 -24.619 4.958 36 C_U66:U75_D C 66 ? D 75 ? 16 1 1 C C 21 1_555 D G 5 1_555 0.815 -0.077 0.417 3.284 -18.566 10.386 37 C_C67:G74_D C 67 ? D 74 ? 19 1 1 C G 22 1_555 D C 4 1_555 -0.207 -0.129 -0.119 -11.591 -11.423 -3.774 38 C_G68:C73_D C 68 ? D 73 ? 19 1 1 C C 23 1_555 D G 3 1_555 0.069 -0.397 0.422 -5.509 -5.968 -2.991 39 C_C69:G72_D C 69 ? D 72 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 22 1_555 A C 3 1_555 B G 21 1_555 -0.485 -1.530 3.200 1.917 4.323 29.783 -3.771 1.299 2.918 8.345 -3.700 30.148 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 3 1_555 B G 21 1_555 A G 4 1_555 B C 20 1_555 0.772 -1.599 3.448 0.904 9.912 31.948 -4.398 -1.195 2.858 17.486 -1.595 33.424 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 4 1_555 B C 20 1_555 A U 5 1_555 B U 19 1_555 -0.167 -1.469 3.040 0.027 5.910 37.923 -2.897 0.257 2.788 9.027 -0.041 38.364 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 5 1_555 B U 19 1_555 A C 6 1_555 B G 18 1_555 0.550 -2.365 3.089 5.359 3.837 26.994 -5.768 0.030 2.787 8.067 -11.267 27.773 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 8 1_555 B G 15 1_555 A G 9 1_555 B C 14 1_555 -0.361 -1.472 3.614 0.035 15.211 30.375 -4.986 0.624 2.603 27.007 -0.062 33.890 5 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 9 1_555 B C 14 1_555 A C 10 1_555 B G 13 1_555 -0.651 -1.154 2.842 -2.039 5.162 30.749 -2.972 0.882 2.654 9.637 3.806 31.234 6 AA_G10C11:G37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A C 10 1_555 B G 13 1_555 A C 11 1_555 B G 12 1_555 0.488 -1.833 3.221 -2.043 9.995 30.248 -4.963 -1.221 2.468 18.505 3.783 31.884 7 AA_C11C12:G36G37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 11 1_555 B G 12 1_555 A G 12 1_555 B C 11 1_555 -0.343 -1.913 3.556 -1.685 8.467 39.037 -3.804 0.302 3.102 12.486 2.485 39.944 8 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 12 1_555 B C 11 1_555 A G 13 1_555 B C 10 1_555 0.097 -1.798 3.266 3.240 9.061 27.976 -5.289 0.441 2.565 18.079 -6.464 29.553 9 AA_G13G14:C34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A G 13 1_555 B C 10 1_555 A C 14 1_555 B G 9 1_555 0.224 -1.450 3.213 -4.451 5.666 32.570 -3.416 -1.087 2.873 9.951 7.818 33.337 10 AA_G14C15:G33C34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 14 1_555 B G 9 1_555 A G 15 1_555 B C 8 1_555 -0.067 -1.481 3.257 12.667 15.724 30.983 -4.260 1.651 2.114 26.235 -21.135 36.846 11 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 15 1_555 B C 8 1_555 A A 17 1_555 B A 7 1_555 -2.563 -0.315 3.812 -0.691 20.443 40.590 -2.523 3.259 3.338 27.466 0.928 45.258 12 AA_G16A18:A31C32_BB A 16 ? B 32 ? A 18 ? B 31 ? 1 A A 17 1_555 B A 7 1_555 A G 18 1_555 B C 6 1_555 0.038 -1.640 3.038 -1.792 10.471 30.990 -4.449 -0.331 2.367 18.914 3.238 32.718 13 AA_A18G19:C30A31_BB A 18 ? B 31 ? A 19 ? B 30 ? 1 A G 18 1_555 B C 6 1_555 A U 19 1_555 B U 5 1_555 -0.605 -1.403 2.822 -0.877 5.312 36.813 -2.790 0.852 2.614 8.357 1.380 37.191 14 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 19 1_555 B U 5 1_555 A C 20 1_555 B G 4 1_555 0.073 -2.215 3.613 -7.778 6.304 34.657 -4.517 -1.273 3.089 10.318 12.731 36.032 15 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 20 1_555 B G 4 1_555 A G 21 1_555 B C 3 1_555 -0.416 -1.182 2.717 9.500 8.215 30.629 -3.147 1.968 2.120 14.794 -17.109 33.047 16 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 21 1_555 B C 3 1_555 A C 22 1_555 B G 2 1_555 -0.032 -1.567 3.184 3.250 10.505 31.108 -4.371 0.555 2.520 18.864 -5.836 32.949 17 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? 1 C G 3 1_555 D C 23 1_555 C C 4 1_555 D G 22 1_555 0.320 -1.180 3.192 0.471 4.113 31.216 -2.906 -0.506 3.020 7.602 -0.871 31.482 18 CC_G49C50:G91C92_DD C 49 ? D 92 ? C 50 ? D 91 ? 1 C C 4 1_555 D G 22 1_555 C G 5 1_555 D C 21 1_555 0.041 -1.805 3.165 -2.012 12.983 26.872 -5.788 -0.434 2.081 26.052 4.036 29.859 19 CC_C50G51:C90G91_DD C 50 ? D 91 ? C 51 ? D 90 ? 1 C G 5 1_555 D C 21 1_555 C U 6 1_555 D U 20 1_555 -0.240 -1.141 3.607 0.520 9.161 41.528 -2.566 0.387 3.291 12.734 -0.723 42.486 20 CC_G51U52:U89C90_DD C 51 ? D 90 ? C 52 ? D 89 ? 1 C U 6 1_555 D U 20 1_555 C C 7 1_555 D G 19 1_555 0.171 -1.632 2.950 0.103 9.256 33.338 -3.944 -0.275 2.425 15.759 -0.175 34.564 21 CC_U52C53:G88U89_DD C 52 ? D 89 ? C 53 ? D 88 ? 1 C C 7 1_555 D G 19 1_555 C A 8 1_555 D A 18 1_555 -0.770 -2.015 3.368 7.892 3.176 35.186 -3.684 2.328 2.946 5.161 -12.824 36.168 22 CC_C53A54:A87G88_DD C 53 ? D 88 ? C 54 ? D 87 ? 1 C A 8 1_555 D A 18 1_555 C C 9 1_555 D G 16 1_555 2.723 -0.295 3.467 -6.466 28.591 33.424 -3.018 -4.215 2.079 41.244 9.327 44.179 23 CC_A54C55:G85A87_DD C 54 ? D 87 ? C 55 ? D 85 ? 1 C C 9 1_555 D G 16 1_555 C G 10 1_555 D C 15 1_555 -0.330 -1.488 3.381 -7.326 9.110 37.978 -3.249 -0.363 2.971 13.610 10.945 39.673 24 CC_C55G56:C84G85_DD C 55 ? D 85 ? C 56 ? D 84 ? 1 C G 10 1_555 D C 15 1_555 C C 11 1_555 D G 14 1_555 0.039 -1.639 3.378 0.914 8.219 26.816 -5.247 0.127 2.762 17.209 -1.914 28.040 25 CC_G56C57:G83C84_DD C 56 ? D 84 ? C 57 ? D 83 ? 1 C C 11 1_555 D G 14 1_555 C C 12 1_555 D G 13 1_555 0.726 -1.535 3.436 1.482 6.103 35.238 -3.392 -0.965 3.162 9.983 -2.424 35.776 26 CC_C57C58:G82G83_DD C 57 ? D 83 ? C 58 ? D 82 ? 1 C C 12 1_555 D G 13 1_555 C G 13 1_555 D C 12 1_555 -0.623 -1.583 2.407 -1.941 4.563 35.196 -3.068 0.819 2.221 7.500 3.190 35.533 27 CC_C58G59:C81G82_DD C 58 ? D 82 ? C 59 ? D 81 ? 1 C G 13 1_555 D C 12 1_555 C G 14 1_555 D C 11 1_555 -0.020 -1.441 3.286 5.782 10.897 32.913 -3.922 0.847 2.649 18.445 -9.787 35.089 28 CC_G59G60:C80C81_DD C 59 ? D 81 ? C 60 ? D 80 ? 1 C G 14 1_555 D C 11 1_555 C C 15 1_555 D G 10 1_555 -0.162 -1.349 3.135 -7.226 7.183 34.470 -3.139 -0.692 2.784 11.806 11.876 35.901 29 CC_G60C61:G79C80_DD C 60 ? D 80 ? C 61 ? D 79 ? 1 C C 15 1_555 D G 10 1_555 C G 16 1_555 D C 9 1_555 -0.252 -1.617 2.854 9.185 11.225 32.290 -3.970 1.483 2.052 19.031 -15.571 35.319 30 CC_C61G62:C78G79_DD C 61 ? D 79 ? C 62 ? D 78 ? 1 C G 16 1_555 D C 9 1_555 C A 18 1_555 D A 8 1_555 -2.895 -0.860 3.993 0.216 17.649 38.067 -3.369 4.082 3.285 25.456 -0.312 41.821 31 CC_G62A64:A77C78_DD C 62 ? D 78 ? C 64 ? D 77 ? 1 C A 18 1_555 D A 8 1_555 C G 19 1_555 D C 7 1_555 0.074 -1.465 3.271 -1.109 3.067 38.388 -2.594 -0.247 3.146 4.654 1.682 38.521 32 CC_A64G65:C76A77_DD C 64 ? D 77 ? C 65 ? D 76 ? 1 C G 19 1_555 D C 7 1_555 C U 20 1_555 D U 6 1_555 0.394 -1.441 3.393 -1.732 8.119 44.929 -2.567 -0.659 3.085 10.517 2.244 45.650 33 CC_G65U66:U75C76_DD C 65 ? D 76 ? C 66 ? D 75 ? 1 C U 20 1_555 D U 6 1_555 C C 21 1_555 D G 5 1_555 0.332 -1.305 2.993 5.332 3.961 29.839 -3.183 0.321 2.816 7.574 -10.196 30.552 34 CC_U66C67:G74U75_DD C 66 ? D 75 ? C 67 ? D 74 ? 1 C C 21 1_555 D G 5 1_555 C G 22 1_555 D C 4 1_555 -1.041 -2.232 3.381 3.332 13.026 22.932 -7.745 3.006 1.718 29.709 -7.601 26.538 35 CC_C67G68:C73G74_DD C 67 ? D 74 ? C 68 ? D 73 ? 1 C G 22 1_555 D C 4 1_555 C C 23 1_555 D G 3 1_555 0.356 -1.513 3.216 -1.106 -1.966 37.001 -2.118 -0.708 3.278 -3.095 1.740 37.067 36 CC_G68C69:G72C73_DD C 68 ? D 73 ? C 69 ? D 72 ? # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 26860025 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucopyranoside' S81 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J7T _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #