HEADER IMMUNE SYSTEM 26-JAN-19 6JBT TITLE COMPLEX STRUCTURE OF TORIPALIMAB-FAB AND PD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 1; COMPND 3 CHAIN: F; COMPND 4 SYNONYM: HPD-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD1, PD1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS TORIPALIMAB-FAB, PD-1, GLYCOSYLATION, COMPLEX STRUCTURE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.GUO,S.TAN,Y.CHAI,J.QI,G.F.GAO,J.YAN REVDAT 4 22-NOV-23 6JBT 1 HETSYN LINK REVDAT 3 29-JUL-20 6JBT 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 25-DEC-19 6JBT 1 REMARK REVDAT 1 19-JUN-19 6JBT 0 JRNL AUTH H.LIU,L.GUO,J.ZHANG,Y.ZHOU,J.ZHOU,J.YAO,H.WU,S.YAO,B.CHEN, JRNL AUTH 2 Y.CHAI,J.QI,G.F.GAO,S.TAN,H.FENG,J.YAN JRNL TITL GLYCOSYLATION-INDEPENDENT BINDING OF MONOCLONAL ANTIBODY JRNL TITL 2 TORIPALIMAB TO FG LOOP OF PD-1 FOR TUMOR IMMUNE CHECKPOINT JRNL TITL 3 THERAPY. JRNL REF MABS V. 11 681 2019 JRNL REFN ESSN 1942-0870 JRNL PMID 30892132 JRNL DOI 10.1080/19420862.2019.1596513 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 23028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1834 - 4.7237 0.98 3408 186 0.1739 0.1994 REMARK 3 2 4.7237 - 3.7498 0.98 3387 138 0.1657 0.2269 REMARK 3 3 3.7498 - 3.2759 0.99 3393 131 0.1994 0.2709 REMARK 3 4 3.2759 - 2.9765 0.97 3334 159 0.2258 0.2849 REMARK 3 5 2.9765 - 2.7632 0.98 3322 178 0.2448 0.2985 REMARK 3 6 2.7632 - 2.6003 0.92 3121 144 0.2710 0.3269 REMARK 3 7 2.6003 - 2.4700 0.60 2033 94 0.2589 0.3020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4400 REMARK 3 ANGLE : 0.771 5998 REMARK 3 CHIRALITY : 0.049 697 REMARK 3 PLANARITY : 0.007 754 REMARK 3 DIHEDRAL : 24.139 1606 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97893 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23760 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M HALOGENS CONSISTING OF NAF, REMARK 280 NABR AND NAI ADDITIVES, 0.1 M TRIS-BASE (PH8.5), 37.5% (V/V) MPD- REMARK 280 P1K-P3350 CONSISTING OF MPD (RACEMIC), PEG 1K AND PEG 3350, REMARK 280 EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.09850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, H, L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F 1 REMARK 465 PRO F 2 REMARK 465 GLY F 3 REMARK 465 TRP F 4 REMARK 465 PHE F 5 REMARK 465 LEU F 6 REMARK 465 ASP F 7 REMARK 465 SER F 8 REMARK 465 PRO F 9 REMARK 465 ASP F 10 REMARK 465 ARG F 11 REMARK 465 ASP F 66 REMARK 465 ARG F 67 REMARK 465 SER F 68 REMARK 465 GLN F 69 REMARK 465 PRO F 70 REMARK 465 GLY F 71 REMARK 465 GLN F 72 REMARK 465 ALA F 130 REMARK 465 GLU F 131 REMARK 465 VAL F 132 REMARK 465 PRO F 133 REMARK 465 THR F 134 REMARK 465 ALA F 135 REMARK 465 HIS F 136 REMARK 465 PRO F 137 REMARK 465 SER F 138 REMARK 465 PRO F 139 REMARK 465 SER F 140 REMARK 465 PRO F 141 REMARK 465 ARG F 142 REMARK 465 PRO F 143 REMARK 465 ALA F 144 REMARK 465 GLY F 145 REMARK 465 GLN F 146 REMARK 465 PHE F 147 REMARK 465 GLN F 148 REMARK 465 THR F 149 REMARK 465 LEU F 150 REMARK 465 VAL F 151 REMARK 465 HIS F 152 REMARK 465 HIS F 153 REMARK 465 HIS F 154 REMARK 465 HIS F 155 REMARK 465 HIS F 156 REMARK 465 HIS F 157 REMARK 465 SER H 140 REMARK 465 ARG H 141 REMARK 465 SER H 142 REMARK 465 THR H 143 REMARK 465 SER H 144 REMARK 465 GLU H 145 REMARK 465 CYS L 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU F 42 8.63 -65.04 REMARK 500 ASN F 55 61.62 61.25 REMARK 500 PRO F 64 -179.92 -68.43 REMARK 500 ARG F 85 -38.56 -132.44 REMARK 500 LYS F 112 85.24 66.78 REMARK 500 ALA F 113 132.60 -35.96 REMARK 500 TYR H 111 -67.58 -99.62 REMARK 500 VAL L 56 -55.69 68.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 6JBT F 2 151 UNP Q15116 PDCD1_HUMAN 21 170 DBREF 6JBT H 1 223 PDB 6JBT 6JBT 1 223 DBREF 6JBT L 1 219 PDB 6JBT 6JBT 1 219 SEQADV 6JBT MET F 1 UNP Q15116 INITIATING METHIONINE SEQADV 6JBT HIS F 152 UNP Q15116 EXPRESSION TAG SEQADV 6JBT HIS F 153 UNP Q15116 EXPRESSION TAG SEQADV 6JBT HIS F 154 UNP Q15116 EXPRESSION TAG SEQADV 6JBT HIS F 155 UNP Q15116 EXPRESSION TAG SEQADV 6JBT HIS F 156 UNP Q15116 EXPRESSION TAG SEQADV 6JBT HIS F 157 UNP Q15116 EXPRESSION TAG SEQRES 1 F 157 MET PRO GLY TRP PHE LEU ASP SER PRO ASP ARG PRO TRP SEQRES 2 F 157 ASN PRO PRO THR PHE SER PRO ALA LEU LEU VAL VAL THR SEQRES 3 F 157 GLU GLY ASP ASN ALA THR PHE THR CYS SER PHE SER ASN SEQRES 4 F 157 THR SER GLU SER PHE VAL LEU ASN TRP TYR ARG MET SER SEQRES 5 F 157 PRO SER ASN GLN THR ASP LYS LEU ALA ALA PHE PRO GLU SEQRES 6 F 157 ASP ARG SER GLN PRO GLY GLN ASP CYS ARG PHE ARG VAL SEQRES 7 F 157 THR GLN LEU PRO ASN GLY ARG ASP PHE HIS MET SER VAL SEQRES 8 F 157 VAL ARG ALA ARG ARG ASN ASP SER GLY THR TYR LEU CYS SEQRES 9 F 157 GLY ALA ILE SER LEU ALA PRO LYS ALA GLN ILE LYS GLU SEQRES 10 F 157 SER LEU ARG ALA GLU LEU ARG VAL THR GLU ARG ARG ALA SEQRES 11 F 157 GLU VAL PRO THR ALA HIS PRO SER PRO SER PRO ARG PRO SEQRES 12 F 157 ALA GLY GLN PHE GLN THR LEU VAL HIS HIS HIS HIS HIS SEQRES 13 F 157 HIS SEQRES 1 H 223 GLN GLY GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 223 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 223 TYR THR PHE THR ASP TYR GLU MET HIS TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO ILE HIS GLY LEU GLU TRP ILE GLY VAL ILE GLU SEQRES 5 H 223 SER GLU THR GLY GLY THR ALA TYR ASN GLN LYS PHE LYS SEQRES 6 H 223 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 H 223 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA ARG GLU GLY ILE THR THR VAL SEQRES 9 H 223 ALA THR THR TYR TYR TRP TYR PHE ASP VAL TRP GLY GLN SEQRES 10 H 223 GLY THR THR VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 223 PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SER THR SEQRES 12 H 223 SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 223 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 223 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 223 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 223 VAL PRO SER SER SER LEU GLY THR LYS THR TYR THR CYS SEQRES 17 H 223 ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 223 ARG VAL SEQRES 1 L 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG A 1 14 HET NAG A 2 14 HET FUC A 3 10 HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG F 307 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 4 FUC 2(C6 H12 O5) FORMUL 7 HOH *89(H2 O) HELIX 1 AA1 ARG F 95 SER F 99 5 5 HELIX 2 AA2 THR H 28 THR H 30 5 3 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 199 LEU H 201 5 3 HELIX 5 AA5 LYS H 213 ASN H 216 5 4 HELIX 6 AA6 GLU L 84 VAL L 88 5 5 HELIX 7 AA7 SER L 126 LYS L 131 1 6 HELIX 8 AA8 LYS L 188 LYS L 193 1 6 SHEET 1 AA1 4 THR F 17 SER F 19 0 SHEET 2 AA1 4 ALA F 31 SER F 36 -1 O THR F 34 N SER F 19 SHEET 3 AA1 4 ASP F 86 VAL F 91 -1 O MET F 89 N PHE F 33 SHEET 4 AA1 4 PHE F 76 GLN F 80 -1 N ARG F 77 O SER F 90 SHEET 1 AA2 5 LEU F 22 THR F 26 0 SHEET 2 AA2 5 ALA F 121 THR F 126 1 O ARG F 124 N VAL F 25 SHEET 3 AA2 5 GLY F 100 ALA F 110 -1 N TYR F 102 O ALA F 121 SHEET 4 AA2 5 SER F 43 SER F 52 -1 N TYR F 49 O LEU F 103 SHEET 5 AA2 5 GLN F 56 PHE F 63 -1 O PHE F 63 N LEU F 46 SHEET 1 AA3 4 LEU F 22 THR F 26 0 SHEET 2 AA3 4 ALA F 121 THR F 126 1 O ARG F 124 N VAL F 25 SHEET 3 AA3 4 GLY F 100 ALA F 110 -1 N TYR F 102 O ALA F 121 SHEET 4 AA3 4 GLN F 114 GLU F 117 -1 O LYS F 116 N ALA F 106 SHEET 1 AA4 4 GLN H 3 GLN H 6 0 SHEET 2 AA4 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA4 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA4 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA5 6 GLU H 10 LYS H 12 0 SHEET 2 AA5 6 THR H 119 VAL H 123 1 O THR H 120 N GLU H 10 SHEET 3 AA5 6 ALA H 92 GLY H 100 -1 N TYR H 94 O THR H 119 SHEET 4 AA5 6 TYR H 32 ALA H 40 -1 N HIS H 35 O ALA H 97 SHEET 5 AA5 6 GLY H 44 GLU H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA5 6 THR H 58 TYR H 60 -1 O ALA H 59 N VAL H 50 SHEET 1 AA6 4 SER H 132 LEU H 136 0 SHEET 2 AA6 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA6 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AA6 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AA7 4 SER H 132 LEU H 136 0 SHEET 2 AA7 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA7 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AA7 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AA8 3 THR H 163 TRP H 166 0 SHEET 2 AA8 3 THR H 207 HIS H 212 -1 O ASP H 211 N THR H 163 SHEET 3 AA8 3 THR H 217 ARG H 222 -1 O LYS H 221 N CYS H 208 SHEET 1 AA9 4 MET L 4 SER L 7 0 SHEET 2 AA9 4 ALA L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA9 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 AA9 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AB1 6 SER L 10 VAL L 13 0 SHEET 2 AB1 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AB1 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AB1 6 LEU L 38 GLN L 43 -1 N TYR L 41 O TYR L 92 SHEET 5 AB1 6 GLN L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AB1 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AB2 4 SER L 10 VAL L 13 0 SHEET 2 AB2 4 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AB2 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AB2 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AB3 4 SER L 119 PHE L 123 0 SHEET 2 AB3 4 THR L 134 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 AB3 4 TYR L 178 SER L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 AB3 4 SER L 164 VAL L 168 -1 N GLN L 165 O THR L 183 SHEET 1 AB4 4 ALA L 158 LEU L 159 0 SHEET 2 AB4 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB4 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 AB4 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SSBOND 1 CYS F 35 CYS F 104 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 3 CYS H 152 CYS H 208 1555 1555 1.98 SSBOND 4 CYS L 23 CYS L 93 1555 1555 2.05 SSBOND 5 CYS L 139 CYS L 199 1555 1555 2.04 LINK ND2 ASN F 30 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN F 39 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN F 97 C1 NAG F 307 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.43 CISPEP 1 SER F 19 PRO F 20 0 -4.87 CISPEP 2 PHE F 63 PRO F 64 0 0.20 CISPEP 3 ALA F 110 PRO F 111 0 -0.09 CISPEP 4 PHE H 158 PRO H 159 0 -3.77 CISPEP 5 GLU H 160 PRO H 161 0 -3.52 CISPEP 6 SER L 7 PRO L 8 0 -2.21 CISPEP 7 VAL L 99 PRO L 100 0 1.91 CISPEP 8 TYR L 145 PRO L 146 0 3.06 CRYST1 75.768 64.197 78.722 90.00 113.36 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013198 0.000000 0.005702 0.00000 SCALE2 0.000000 0.015577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013838 0.00000