HEADER CELL ADHESION 26-JAN-19 6JBV TITLE CRYSTAL STRUCTURE OF SPAE BASAL PILIN FROM LACTOBACILLUS RHAMNOSUS GG TITLE 2 - SELENIUM DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL WALL ANCHORING PILIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS (STRAIN ATCC 53103 / SOURCE 3 GG); SOURCE 4 ORGANISM_TAXID: 568703; SOURCE 5 STRAIN: ATCC 53103 / GG; SOURCE 6 ATCC: 53103; SOURCE 7 GENE: DU507_12320; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B(+); SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS BASAL PILINS, SPAFED PILUS, ISOPEPTIDE BONDS, PILUS ANCHORING, KEYWDS 2 SURFACE PROTEINS, PROBIOTIC, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.K.MEGTA,A.K.MISHRA,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 2 15-SEP-21 6JBV 1 REMARK LINK REVDAT 1 26-JUN-19 6JBV 0 JRNL AUTH A.K.MEGTA,A.K.MISHRA,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL CRYSTAL STRUCTURE OF BASAL PILIN SPAE REVEALS THE MOLECULAR JRNL TITL 2 BASIS OF ITS INCORPORATION IN THE LACTOBACILLAR SPAFED JRNL TITL 3 PILUS. JRNL REF J.STRUCT.BIOL. V. 207 74 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31026587 JRNL DOI 10.1016/J.JSB.2019.04.016 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24000 REMARK 3 B22 (A**2) : 2.39000 REMARK 3 B33 (A**2) : -3.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.344 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2389 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2175 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3237 ; 1.971 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5047 ; 1.430 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 6.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;32.397 ;22.302 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;12.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2694 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 1.777 ; 1.715 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1203 ; 1.777 ; 1.713 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1498 ; 2.700 ; 2.560 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1499 ; 2.699 ; 2.561 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1185 ; 2.303 ; 1.879 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1186 ; 2.302 ; 1.880 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1739 ; 3.392 ; 2.742 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9852 ; 5.266 ;33.041 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9694 ; 5.182 ;32.515 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4320 59.4550 119.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0082 REMARK 3 T33: 0.2299 T12: 0.0106 REMARK 3 T13: 0.0314 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.3870 L22: 1.8642 REMARK 3 L33: 2.6200 L12: -0.0651 REMARK 3 L13: -0.7437 L23: 0.2549 REMARK 3 S TENSOR REMARK 3 S11: -0.1562 S12: 0.0454 S13: -0.2625 REMARK 3 S21: -0.0805 S22: 0.0408 S23: -0.0938 REMARK 3 S31: 0.4254 S32: 0.0919 S33: 0.1155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7340 57.4980 79.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: 0.0129 REMARK 3 T33: 0.1997 T12: 0.0018 REMARK 3 T13: -0.0064 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.1701 L22: 0.6912 REMARK 3 L33: 1.7528 L12: 0.1418 REMARK 3 L13: 0.1551 L23: 0.4654 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.1224 S13: 0.1294 REMARK 3 S21: -0.0002 S22: -0.0124 S23: -0.0135 REMARK 3 S31: -0.1066 S32: -0.0077 S33: 0.0344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97868 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38761 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.712 REMARK 200 RESOLUTION RANGE LOW (A) : 65.556 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THREE DIMENSIONAL PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 8.5, 0.3 M REMARK 280 SODIUM FORMATE, 30% (W/V) PEG 3350, 1 M SODIUM IODIDE, 0.1 M L- REMARK 280 PROLINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.88950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.55600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.96800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.55600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.88950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.96800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 23 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 ASP A 26 REMARK 465 PRO A 27 REMARK 465 ASN A 28 REMARK 465 SER A 29 REMARK 465 ILE A 45 REMARK 465 ARG A 46 REMARK 465 GLN A 47 REMARK 465 PRO A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 VAL A 51 REMARK 465 TRP A 52 REMARK 465 TYR A 53 REMARK 465 GLU A 54 REMARK 465 ASN A 55 REMARK 465 ASP A 56 REMARK 465 GLY A 57 REMARK 465 HIS A 58 REMARK 465 ARG A 59 REMARK 465 ILE A 60 REMARK 465 ASP A 61 REMARK 465 PRO A 62 REMARK 465 ASN A 63 REMARK 465 ASN A 64 REMARK 465 PRO A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 ASP A 68 REMARK 465 GLY A 69 REMARK 465 TYR A 70 REMARK 465 LYS A 71 REMARK 465 LEU A 72 REMARK 465 LEU A 73 REMARK 465 SER A 74 REMARK 465 LYS A 75 REMARK 465 THR A 76 REMARK 465 SER A 177 REMARK 465 THR A 178 REMARK 465 GLU A 179 REMARK 465 LEU A 180 REMARK 465 ASN A 181 REMARK 465 VAL A 182 REMARK 465 VAL A 316 REMARK 465 ASP A 317 REMARK 465 ALA A 318 REMARK 465 LYS A 319 REMARK 465 SER A 320 REMARK 465 GLN A 375 REMARK 465 ALA A 376 REMARK 465 SER A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 GLY A 380 REMARK 465 ASP A 381 REMARK 465 GLN A 382 REMARK 465 THR A 383 REMARK 465 ALA A 384 REMARK 465 GLY A 385 REMARK 465 PRO A 386 REMARK 465 SER A 387 REMARK 465 THR A 388 REMARK 465 THR A 389 REMARK 465 GLN A 390 REMARK 465 LEU A 391 REMARK 465 GLY A 392 REMARK 465 ASN A 393 REMARK 465 HIS A 394 REMARK 465 GLY A 395 REMARK 465 GLN A 396 REMARK 465 ASP A 397 REMARK 465 THR A 398 REMARK 465 ASN A 399 REMARK 465 GLY A 400 REMARK 465 THR A 401 REMARK 465 GLY A 402 REMARK 465 THR A 403 REMARK 465 ARG A 404 REMARK 465 THR A 405 REMARK 465 PRO A 406 REMARK 465 LYS A 407 REMARK 465 ARG A 408 REMARK 465 GLN A 409 REMARK 465 SER A 410 REMARK 465 GLY A 411 REMARK 465 TYR A 412 REMARK 465 LEU A 413 REMARK 465 PRO A 414 REMARK 465 LEU A 415 REMARK 465 GLU A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 THR A 145 OG1 CG2 REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ASP A 263 CG OD1 OD2 REMARK 470 LEU A 264 CG CD1 CD2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 172 -166.03 -121.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 110 O REMARK 620 2 SER A 189 OG 92.6 REMARK 620 3 HOH A 609 O 80.6 87.8 REMARK 620 4 HOH A 701 O 93.6 155.0 117.1 REMARK 620 5 HOH A 787 O 167.2 100.2 100.1 74.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 221 OD1 REMARK 620 2 THR A 293 OG1 123.4 REMARK 620 3 GLY A 294 O 105.2 130.7 REMARK 620 4 ARG A 296 O 89.8 84.1 88.5 REMARK 620 5 HOH A 726 O 98.6 93.2 87.0 171.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 346 OE1 REMARK 620 2 HOH A 627 O 130.9 REMARK 620 3 HOH A 779 O 78.0 117.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 DBREF1 6JBV A 30 414 UNP A0A345U425_LACRG DBREF2 6JBV A A0A345U425 30 414 SEQADV 6JBV MSE A 23 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV GLY A 24 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV ARG A 25 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV ASP A 26 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV PRO A 27 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV ASN A 28 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV SER A 29 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV LEU A 415 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV GLU A 416 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV HIS A 417 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV HIS A 418 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV HIS A 419 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV HIS A 420 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV HIS A 421 UNP A0A345U42 EXPRESSION TAG SEQADV 6JBV HIS A 422 UNP A0A345U42 EXPRESSION TAG SEQRES 1 A 400 MSE GLY ARG ASP PRO ASN SER ASP GLN THR ALA GLU ILE SEQRES 2 A 400 VAL ILE HIS LYS ARG ILE TYR ARG ASP ILE ARG GLN PRO SEQRES 3 A 400 GLU ASP VAL TRP TYR GLU ASN ASP GLY HIS ARG ILE ASP SEQRES 4 A 400 PRO ASN ASN PRO ASP LYS ASP GLY TYR LYS LEU LEU SER SEQRES 5 A 400 LYS THR SER GLY LEU ASN GLY ALA ASN PHE GLU VAL TYR SEQRES 6 A 400 ASP ALA SER SER LEU LEU LYS PRO ASN MSE THR PRO GLU SEQRES 7 A 400 ALA ILE ARG ALA LEU VAL ASP ARG TYR GLN ASN MSE THR SEQRES 8 A 400 ARG LYS GLN ALA LEU LYS PHE ALA ARG ALA ASN LEU LYS SEQRES 9 A 400 LEU ALA GLY GLN GLY ASN LYS GLY ILE GLY LEU MSE ASN SEQRES 10 A 400 THR LYS ASN ASP PRO THR LEU GLY GLU ASP GLY ILE SER SEQRES 11 A 400 ARG ILE THR VAL SER VAL ASP GLN GLN ALA PRO THR LYS SEQRES 12 A 400 ALA TYR LEU MSE ILE GLU VAL ALA PRO ASP PRO SER THR SEQRES 13 A 400 GLU LEU ASN VAL ASP LEU GLU ARG LYS SER SER PRO MSE SEQRES 14 A 400 LEU VAL VAL PHE PRO VAL THR ASP PRO ILE SER GLY ASN SEQRES 15 A 400 PRO LEU GLN THR ILE HIS LEU TYR PRO LYS ASN VAL GLY SEQRES 16 A 400 TYR VAL ARG ASP PRO TYR PHE PHE LYS PHE GLY VAL HIS SEQRES 17 A 400 PRO ASP GLY THR SER LYS ARG LEU ALA GLY ALA ILE PHE SEQRES 18 A 400 ALA ILE TYR ARG ILE GLU ASN GLY LYS LYS LEU TYR LEU SEQRES 19 A 400 ASP MSE SER PRO VAL THR ASP LEU ARG ASN LYS TRP VAL SEQRES 20 A 400 SER THR THR ASP PRO LEU HIS ASP ASP ARG VAL ASN LYS SEQRES 21 A 400 PHE VAL SER ASP GLN ASP GLY LEU VAL ASN THR GLY GLU SEQRES 22 A 400 ARG PHE LEU PRO ALA GLY GLU TYR PHE PHE GLU GLU LEU SEQRES 23 A 400 GLN GLY VAL PRO GLY TYR GLU VAL ASP ALA LYS SER ARG SEQRES 24 A 400 ALA ILE LYS ILE GLU ILE PRO ASP SER TRP GLU ASP GLU SEQRES 25 A 400 ASP GLY ASN ARG ARG PHE VAL LEU ILE ASP GLY GLN PRO SEQRES 26 A 400 MSE GLN GLU ASN PHE GLY GLY VAL VAL THR PRO GLU MSE SEQRES 27 A 400 ILE SER SER GLY TYR PRO ARG VAL TYR ASN TYR ALA ASP SEQRES 28 A 400 LYS GLN ALA SER THR THR GLY ASP GLN THR ALA GLY PRO SEQRES 29 A 400 SER THR THR GLN LEU GLY ASN HIS GLY GLN ASP THR ASN SEQRES 30 A 400 GLY THR GLY THR ARG THR PRO LYS ARG GLN SER GLY TYR SEQRES 31 A 400 LEU PRO LEU GLU HIS HIS HIS HIS HIS HIS MODRES 6JBV MSE A 97 MET MODIFIED RESIDUE MODRES 6JBV MSE A 112 MET MODIFIED RESIDUE MODRES 6JBV MSE A 138 MET MODIFIED RESIDUE MODRES 6JBV MSE A 169 MET MODIFIED RESIDUE MODRES 6JBV MSE A 191 MET MODIFIED RESIDUE MODRES 6JBV MSE A 258 MET MODIFIED RESIDUE MODRES 6JBV MSE A 348 MET MODIFIED RESIDUE MODRES 6JBV MSE A 360 MET MODIFIED RESIDUE HET MSE A 97 8 HET MSE A 112 8 HET MSE A 138 8 HET MSE A 169 8 HET MSE A 191 8 HET MSE A 258 8 HET MSE A 348 8 HET MSE A 360 8 HET NA A 501 1 HET NA A 502 1 HET NA A 503 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 NA 3(NA 1+) FORMUL 5 HOH *215(H2 O) HELIX 1 AA1 SER A 90 LEU A 93 5 4 HELIX 2 AA2 THR A 98 ASN A 111 1 14 HELIX 3 AA3 THR A 113 LEU A 125 1 13 HELIX 4 AA4 THR A 357 GLY A 364 1 8 SHEET 1 AA1 4 LYS A 141 ASP A 143 0 SHEET 2 AA1 4 GLU A 148 VAL A 158 -1 O GLU A 148 N ASP A 143 SHEET 3 AA1 4 GLN A 31 HIS A 38 -1 N ILE A 37 O SER A 152 SHEET 4 AA1 4 THR A 208 LEU A 211 1 O ILE A 209 N VAL A 36 SHEET 1 AA2 3 ARG A 40 TYR A 42 0 SHEET 2 AA2 3 LYS A 214 GLY A 217 1 O ASN A 215 N TYR A 42 SHEET 3 AA2 3 LEU A 184 ARG A 186 -1 N GLU A 185 O VAL A 216 SHEET 1 AA3 4 LEU A 137 ASN A 139 0 SHEET 2 AA3 4 ASN A 83 ASP A 88 -1 N PHE A 84 O MSE A 138 SHEET 3 AA3 4 LYS A 165 VAL A 172 -1 O ILE A 170 N GLU A 85 SHEET 4 AA3 4 MSE A 191 PHE A 195 -1 O VAL A 193 N TYR A 167 SHEET 1 AA4 3 SER A 235 ARG A 237 0 SHEET 2 AA4 3 TYR A 223 VAL A 229 -1 N GLY A 228 O LYS A 236 SHEET 3 AA4 3 LEU A 290 ASN A 292 -1 O VAL A 291 N PHE A 224 SHEET 1 AA5 3 SER A 235 ARG A 237 0 SHEET 2 AA5 3 TYR A 223 VAL A 229 -1 N GLY A 228 O LYS A 236 SHEET 3 AA5 3 ARG A 367 TYR A 371 1 O ASN A 370 N PHE A 227 SHEET 1 AA6 4 TRP A 268 VAL A 269 0 SHEET 2 AA6 4 LYS A 252 LEU A 256 -1 N TYR A 255 O VAL A 269 SHEET 3 AA6 4 ILE A 242 GLU A 249 -1 N ILE A 245 O LEU A 256 SHEET 4 AA6 4 PHE A 283 VAL A 284 -1 O PHE A 283 N PHE A 243 SHEET 1 AA7 7 TRP A 268 VAL A 269 0 SHEET 2 AA7 7 LYS A 252 LEU A 256 -1 N TYR A 255 O VAL A 269 SHEET 3 AA7 7 ILE A 242 GLU A 249 -1 N ILE A 245 O LEU A 256 SHEET 4 AA7 7 GLY A 301 GLN A 309 -1 O GLU A 306 N ALA A 244 SHEET 5 AA7 7 ALA A 322 ILE A 327 -1 O ILE A 327 N GLY A 301 SHEET 6 AA7 7 LEU A 342 ILE A 343 -1 O LEU A 342 N GLU A 326 SHEET 7 AA7 7 GLN A 346 PRO A 347 -1 O GLN A 346 N ILE A 343 LINK NZ LYS A 39 CG ASN A 215 1555 1555 1.31 LINK C ASN A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N THR A 98 1555 1555 1.34 LINK C ASN A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N THR A 113 1555 1555 1.35 LINK C LEU A 137 N MSE A 138 1555 1555 1.35 LINK C MSE A 138 N ASN A 139 1555 1555 1.34 LINK C LEU A 168 N MSE A 169 1555 1555 1.34 LINK C MSE A 169 N ILE A 170 1555 1555 1.35 LINK C PRO A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N LEU A 192 1555 1555 1.32 LINK NZ LYS A 226 CG ASN A 370 1555 1555 1.40 LINK C ASP A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N SER A 259 1555 1555 1.33 LINK C PRO A 347 N MSE A 348 1555 1555 1.34 LINK C MSE A 348 N GLN A 349 1555 1555 1.37 LINK C GLU A 359 N MSE A 360 1555 1555 1.33 LINK C MSE A 360 N ILE A 361 1555 1555 1.33 LINK O GLN A 110 NA NA A 502 1555 1555 2.45 LINK OG SER A 189 NA NA A 502 1555 1555 2.37 LINK OD1 ASP A 221 NA NA A 501 1555 1555 2.27 LINK OG1 THR A 293 NA NA A 501 1555 1555 2.38 LINK O GLY A 294 NA NA A 501 1555 1555 2.34 LINK O ARG A 296 NA NA A 501 1555 1555 2.33 LINK OE1 GLN A 346 NA NA A 503 1555 1555 2.22 LINK NA NA A 501 O HOH A 726 1555 1555 2.39 LINK NA NA A 502 O HOH A 609 1555 1555 2.50 LINK NA NA A 502 O HOH A 701 1555 1555 2.39 LINK NA NA A 502 O HOH A 787 1555 1555 2.31 LINK NA NA A 503 O HOH A 627 1555 1555 2.84 LINK NA NA A 503 O HOH A 779 1555 1555 2.72 CISPEP 1 PHE A 195 PRO A 196 0 -6.13 CISPEP 2 TYR A 365 PRO A 366 0 1.11 SITE 1 AC1 5 ASP A 221 THR A 293 GLY A 294 ARG A 296 SITE 2 AC1 5 HOH A 726 SITE 1 AC2 5 GLN A 110 SER A 189 HOH A 609 HOH A 701 SITE 2 AC2 5 HOH A 787 SITE 1 AC3 7 SER A 91 GLN A 346 TYR A 365 PRO A 366 SITE 2 AC3 7 ARG A 367 HOH A 627 HOH A 779 CRYST1 41.779 63.936 131.112 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007627 0.00000