HEADER LYASE 27-JAN-19 6JBY TITLE CRYSTAL STRUCTURE OF ENDO-DEGLYCOSYLATED HYDROXYNITRILE LYASE ISOZYME TITLE 2 5 OF PRUNUS COMMUNIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNL ISOENZYME 5; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRUNUS DULCIS; SOURCE 3 ORGANISM_COMMON: ALMOND; SOURCE 4 ORGANISM_TAXID: 3755; SOURCE 5 GENE: HNL5; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS ENDO-DEGLYCOSYLATED, GMC OXIDOREDUCTASES N AND C SUPERFAMILY, KEYWDS 2 FLAVOPROTEIN, COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.ZHENG,F.L.LI,H.L.YU,J.H.XU REVDAT 4 22-NOV-23 6JBY 1 HETSYN REVDAT 3 29-JUL-20 6JBY 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 13-MAY-20 6JBY 1 JRNL REVDAT 1 01-APR-20 6JBY 0 JRNL AUTH Y.C.ZHENG,F.L.LI,Z.M.LIN,G.Q.LIN,R.HONG,H.L.YU,J.H.XU JRNL TITL STRUCTURE-GUIDED TUNING OF A HYDROXYNITRILE LYASE TO ACCEPT JRNL TITL 2 RIGID PHARMACO ALDEHYDES. JRNL REF ACS CATALYSIS 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C01103 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12-2829-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 79649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3891 - 4.9143 1.00 2818 161 0.1737 0.1782 REMARK 3 2 4.9143 - 3.9013 1.00 2706 140 0.1275 0.1389 REMARK 3 3 3.9013 - 3.4083 1.00 2668 153 0.1471 0.1520 REMARK 3 4 3.4083 - 3.0967 1.00 2650 132 0.1607 0.1891 REMARK 3 5 3.0967 - 2.8748 1.00 2653 130 0.1715 0.1834 REMARK 3 6 2.8748 - 2.7053 1.00 2616 153 0.1719 0.2306 REMARK 3 7 2.7053 - 2.5699 1.00 2625 157 0.1689 0.1897 REMARK 3 8 2.5699 - 2.4580 1.00 2607 126 0.1612 0.1958 REMARK 3 9 2.4580 - 2.3634 1.00 2618 114 0.1580 0.1924 REMARK 3 10 2.3634 - 2.2818 1.00 2640 130 0.1579 0.1893 REMARK 3 11 2.2818 - 2.2105 1.00 2597 148 0.1593 0.1909 REMARK 3 12 2.2105 - 2.1473 1.00 2597 144 0.1579 0.1642 REMARK 3 13 2.1473 - 2.0908 1.00 2602 148 0.1567 0.1915 REMARK 3 14 2.0908 - 2.0398 1.00 2567 157 0.1585 0.2009 REMARK 3 15 2.0398 - 1.9934 1.00 2595 139 0.1576 0.1818 REMARK 3 16 1.9934 - 1.9510 1.00 2597 126 0.1535 0.1922 REMARK 3 17 1.9510 - 1.9119 1.00 2559 149 0.1599 0.1806 REMARK 3 18 1.9119 - 1.8759 1.00 2613 141 0.1587 0.1721 REMARK 3 19 1.8759 - 1.8424 1.00 2589 130 0.1568 0.2048 REMARK 3 20 1.8424 - 1.8111 1.00 2582 145 0.1599 0.1786 REMARK 3 21 1.8111 - 1.7819 1.00 2568 152 0.1560 0.1981 REMARK 3 22 1.7819 - 1.7545 1.00 2602 127 0.1549 0.1749 REMARK 3 23 1.7545 - 1.7287 1.00 2557 133 0.1590 0.1855 REMARK 3 24 1.7287 - 1.7043 1.00 2564 144 0.1588 0.2016 REMARK 3 25 1.7043 - 1.6813 1.00 2605 126 0.1581 0.1870 REMARK 3 26 1.6813 - 1.6595 1.00 2572 128 0.1606 0.2330 REMARK 3 27 1.6595 - 1.6387 1.00 2591 137 0.1661 0.2038 REMARK 3 28 1.6387 - 1.6190 1.00 2591 130 0.1637 0.1918 REMARK 3 29 1.6190 - 1.6002 0.97 2460 140 0.1630 0.2110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4265 REMARK 3 ANGLE : 0.908 5846 REMARK 3 CHIRALITY : 0.057 675 REMARK 3 PLANARITY : 0.006 752 REMARK 3 DIHEDRAL : 7.262 2455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3-8.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 20.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30900 REMARK 200 R SYM FOR SHELL (I) : 0.30900 REMARK 200 FOR SHELL : 8.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5EB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE, CALCIUM CHLORIDE, REMARK 280 MAGNESIUM CHLORIDE, PEG 550MME, PEG 20000, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.76250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.00900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.65350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.00900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.76250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.65350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 GLU A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 ILE A 520 REMARK 465 ARG A 521 REMARK 465 LEU A 522 REMARK 465 GLU A 523 REMARK 465 ALA A 524 REMARK 465 ILE A 525 REMARK 465 HIS A 526 REMARK 465 ASN A 527 REMARK 465 ILE A 528 REMARK 465 GLN A 529 REMARK 465 GLU A 530 REMARK 465 SER A 531 REMARK 465 MET A 532 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 353 O HOH A 701 2.06 REMARK 500 O PRO A 438 O HOH A 702 2.11 REMARK 500 O HOH A 842 O HOH A 1033 2.11 REMARK 500 O HOH A 707 O HOH A 919 2.11 REMARK 500 O HOH A 854 O HOH A 1061 2.13 REMARK 500 O HOH A 869 O HOH A 1293 2.13 REMARK 500 O HOH A 1038 O HOH A 1167 2.13 REMARK 500 O HOH A 795 O HOH A 1188 2.14 REMARK 500 O HOH A 1192 O HOH A 1197 2.15 REMARK 500 O HOH A 1049 O HOH A 1167 2.16 REMARK 500 O HOH A 707 O HOH A 1158 2.17 REMARK 500 O HOH A 722 O HOH A 1188 2.17 REMARK 500 O HOH A 722 O HOH A 1105 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 342 -7.86 79.19 REMARK 500 SER A 378 -31.12 -134.90 REMARK 500 HIS A 460 43.02 -101.75 REMARK 500 SER A 465 59.21 -143.46 REMARK 500 LYS A 469 -52.74 -123.32 REMARK 500 ASP A 487 -168.77 175.67 REMARK 500 ASN A 496 -171.33 177.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1370 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 6.40 ANGSTROMS DBREF 6JBY A -9 532 PDB 6JBY 6JBY -9 532 SEQRES 1 A 542 GLU ALA GLU ALA HIS HIS HIS HIS HIS HIS LEU ALA ASN SEQRES 2 A 542 THR SER ALA HIS ASP PHE SER TYR LEU LYS PHE VAL TYR SEQRES 3 A 542 ASN ALA THR ASP THR SER LEU GLU GLY SER TYR ASP TYR SEQRES 4 A 542 ILE VAL ILE GLY GLY GLY THR SER GLY CYS PRO LEU ALA SEQRES 5 A 542 ALA THR LEU SER GLU LYS TYR LYS VAL LEU LEU LEU GLU SEQRES 6 A 542 ARG GLY THR ILE ALA THR GLU TYR PRO ASN THR LEU THR SEQRES 7 A 542 ALA ASP GLY PHE ALA TYR ASN LEU GLN GLN GLN ASP ASP SEQRES 8 A 542 GLY LYS THR PRO VAL GLU ARG PHE VAL SER GLU ASP GLY SEQRES 9 A 542 ILE ASP ASN VAL ARG ALA ARG ILE LEU GLY GLY THR THR SEQRES 10 A 542 ILE ILE ASN ALA GLY VAL TYR ALA ARG ALA ASN ILE SER SEQRES 11 A 542 PHE TYR SER GLN THR GLY ILE GLU TRP ASP LEU ASP LEU SEQRES 12 A 542 VAL ASN LYS THR TYR GLU TRP VAL GLU ASP ALA ILE VAL SEQRES 13 A 542 VAL LYS PRO ASN ASN GLN SER TRP GLN SER VAL ILE GLY SEQRES 14 A 542 GLU GLY PHE LEU GLU ALA GLY ILE LEU PRO ASP ASN GLY SEQRES 15 A 542 PHE SER LEU ASP HIS GLU ALA GLY THR ARG LEU THR GLY SEQRES 16 A 542 SER THR PHE ASP ASN ASN GLY THR ARG HIS ALA ALA ASP SEQRES 17 A 542 GLU LEU LEU ASN LYS GLY ASP PRO ASN ASN LEU LEU VAL SEQRES 18 A 542 ALA VAL GLN ALA SER VAL GLU LYS ILE LEU PHE SER SER SEQRES 19 A 542 ASN THR SER ASN LEU SER ALA ILE GLY VAL ILE TYR THR SEQRES 20 A 542 ASP SER ASP GLY ASN SER HIS GLN ALA PHE VAL ARG GLY SEQRES 21 A 542 ASN GLY GLU VAL ILE VAL SER ALA GLY THR ILE GLY THR SEQRES 22 A 542 PRO GLN LEU LEU LEU LEU SER GLY VAL GLY PRO GLU SER SEQRES 23 A 542 TYR LEU SER SER LEU ASN ILE THR VAL VAL GLN PRO ASN SEQRES 24 A 542 PRO TYR VAL GLY GLN PHE VAL TYR ASP ASN PRO ARG ASN SEQRES 25 A 542 PHE ILE ASN ILE LEU PRO PRO ASN PRO ILE GLU ALA SER SEQRES 26 A 542 VAL VAL THR VAL LEU GLY ILE ARG SER ASP TYR TYR GLN SEQRES 27 A 542 VAL SER LEU SER SER LEU PRO PHE SER THR PRO PRO PHE SEQRES 28 A 542 SER LEU PHE PRO THR THR SER TYR PRO LEU PRO ASN SER SEQRES 29 A 542 THR PHE ALA HIS ILE VAL SER GLN VAL PRO GLY PRO LEU SEQRES 30 A 542 SER HIS GLY SER VAL THR LEU ASN SER SER SER ASP VAL SEQRES 31 A 542 ARG ILE ALA PRO ASN ILE LYS PHE ASN TYR TYR SER ASN SEQRES 32 A 542 SER THR ASP LEU ALA ASN CYS VAL SER GLY MET LYS LYS SEQRES 33 A 542 LEU GLY ASP LEU LEU ARG THR LYS ALA LEU GLU PRO TYR SEQRES 34 A 542 LYS ALA ARG ASP VAL LEU GLY ILE ASP GLY PHE ASN TYR SEQRES 35 A 542 LEU GLY VAL PRO LEU PRO GLU ASN GLN THR ASP ASP ALA SEQRES 36 A 542 SER PHE GLU THR PHE CYS LEU ASP ASN VAL ALA SER TYR SEQRES 37 A 542 TRP HIS TYR HIS GLY GLY SER LEU VAL GLY LYS VAL LEU SEQRES 38 A 542 ASP ASP SER PHE ARG VAL MET GLY ILE LYS ALA LEU ARG SEQRES 39 A 542 VAL VAL ASP ALA SER THR PHE PRO TYR GLU PRO ASN SER SEQRES 40 A 542 HIS PRO GLN GLY PHE TYR LEU MET LEU GLY ARG TYR VAL SEQRES 41 A 542 GLY LEU GLN ILE LEU GLN GLU ARG SER ILE ARG LEU GLU SEQRES 42 A 542 ALA ILE HIS ASN ILE GLN GLU SER MET HET NAG B 1 14 HET NAG B 2 14 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HET FAD A 608 53 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 8 FAD C27 H33 N9 O15 P2 FORMUL 9 HOH *671(H2 O) HELIX 1 AA1 PHE A 9 LYS A 13 5 5 HELIX 2 AA2 ASP A 20 GLU A 24 5 5 HELIX 3 AA3 SER A 37 SER A 46 1 10 HELIX 4 AA4 ILE A 59 ASP A 70 5 12 HELIX 5 AA5 GLY A 71 GLN A 78 1 8 HELIX 6 AA6 GLY A 104 ILE A 109 5 6 HELIX 7 AA7 SER A 120 GLY A 126 1 7 HELIX 8 AA8 ASP A 130 VAL A 146 1 17 HELIX 9 AA9 GLN A 152 ALA A 165 1 14 HELIX 10 AB1 ALA A 196 GLY A 204 5 9 HELIX 11 AB2 ALA A 258 SER A 270 1 13 HELIX 12 AB3 PRO A 274 LEU A 281 1 8 HELIX 13 AB4 ASN A 393 ARG A 412 1 20 HELIX 14 AB5 LEU A 416 LYS A 420 5 5 HELIX 15 AB6 GLY A 426 PHE A 430 5 5 HELIX 16 AB7 ASP A 443 ASN A 454 1 12 HELIX 17 AB8 ASP A 487 PHE A 491 5 5 HELIX 18 AB9 PRO A 499 SER A 519 1 21 SHEET 1 AA1 7 VAL A 15 ASN A 17 0 SHEET 2 AA1 7 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 AA1 7 VAL A 51 GLU A 55 1 N LEU A 53 O ALA A 212 SHEET 4 AA1 7 GLY A 25 ILE A 32 1 N VAL A 31 O LEU A 54 SHEET 5 AA1 7 SER A 243 VAL A 256 1 O ILE A 255 N ILE A 30 SHEET 6 AA1 7 ALA A 231 THR A 237 -1 N VAL A 234 O ALA A 246 SHEET 7 AA1 7 SER A 216 PHE A 222 -1 N LEU A 221 O GLY A 233 SHEET 1 AA2 6 VAL A 15 ASN A 17 0 SHEET 2 AA2 6 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 AA2 6 VAL A 51 GLU A 55 1 N LEU A 53 O ALA A 212 SHEET 4 AA2 6 GLY A 25 ILE A 32 1 N VAL A 31 O LEU A 54 SHEET 5 AA2 6 SER A 243 VAL A 256 1 O ILE A 255 N ILE A 30 SHEET 6 AA2 6 LEU A 483 VAL A 485 1 O ARG A 484 N VAL A 256 SHEET 1 AA3 2 VAL A 86 VAL A 90 0 SHEET 2 AA3 2 ASP A 96 ALA A 100 -1 O ARG A 99 N GLU A 87 SHEET 1 AA4 2 VAL A 113 TYR A 114 0 SHEET 2 AA4 2 GLY A 185 SER A 186 -1 O GLY A 185 N TYR A 114 SHEET 1 AA5 7 ASP A 170 PHE A 173 0 SHEET 2 AA5 7 GLY A 180 LEU A 183 1 O THR A 181 N ASN A 171 SHEET 3 AA5 7 VAL A 319 ARG A 323 -1 O ILE A 322 N GLY A 180 SHEET 4 AA5 7 TYR A 326 SER A 333 -1 O GLN A 328 N GLY A 321 SHEET 5 AA5 7 PHE A 356 GLN A 362 -1 O HIS A 358 N LEU A 331 SHEET 6 AA5 7 PRO A 300 ILE A 306 -1 N ILE A 304 O ILE A 359 SHEET 7 AA5 7 TYR A 432 LEU A 433 -1 O LEU A 433 N ASN A 305 SHEET 1 AA6 7 ASP A 170 PHE A 173 0 SHEET 2 AA6 7 GLY A 180 LEU A 183 1 O THR A 181 N ASN A 171 SHEET 3 AA6 7 VAL A 319 ARG A 323 -1 O ILE A 322 N GLY A 180 SHEET 4 AA6 7 TYR A 326 SER A 333 -1 O GLN A 328 N GLY A 321 SHEET 5 AA6 7 PHE A 356 GLN A 362 -1 O HIS A 358 N LEU A 331 SHEET 6 AA6 7 PRO A 300 ILE A 306 -1 N ILE A 304 O ILE A 359 SHEET 7 AA6 7 ALA A 456 SER A 457 -1 O ALA A 456 N ARG A 301 SHEET 1 AA7 2 VAL A 272 GLY A 273 0 SHEET 2 AA7 2 GLN A 287 PRO A 288 1 O GLN A 287 N GLY A 273 SHEET 1 AA8 4 ASN A 385 LYS A 387 0 SHEET 2 AA8 4 GLY A 370 THR A 373 -1 N THR A 373 O ASN A 385 SHEET 3 AA8 4 GLN A 294 TYR A 297 -1 N VAL A 296 O GLY A 370 SHEET 4 AA8 4 HIS A 462 GLY A 463 -1 O HIS A 462 N TYR A 297 SSBOND 1 CYS A 400 CYS A 451 1555 1555 2.06 LINK ND2 ASN A 17 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 135 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 282 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 375 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 393 C1 NAG A 605 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 LEU A 168 PRO A 169 0 1.16 CISPEP 2 GLY A 365 PRO A 366 0 -10.95 CRYST1 49.525 91.307 132.018 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007575 0.00000